1. Nucleotide diversity (Pi), heterozygosity (H_p), and integrated haplotype score (iHS)

Group	Pi	Hp	iHS
Indian indicine (IN)	sig_Pi_IN_30k.anno	sig_Hp_IN_60k.anno	sig_iHS_IN_30k.anno
Chinese indicine (CN)	sig_Pi_CN_30k.anno	sig_Hp_CN_60k.anno	sig_iHS_CN_30k.anno
East Asian taurine (EA)	sig_Pi_EA_30k.anno	sig_Hp_EA_60k.anno	sig_iHS_EA_30k.anno
Eurasian taurine (EUA)	sig_Pi_EUA_30k.anno	sig_Hp_EUA_60k.anno	sig_iHS_EUA_30k.anno
European taurine (EUR)	sig_Pi_EUR_30k.anno	sig_Hp_EUR_60k.anno	sig_iHS_EUR_30k.anno
African taurine (AFR)	sig_Pi_AFR_30k.anno	sig_Hp_AFR_60k.anno	sig_iHS_AFR_30k.anno
Bos indicus (BIN)	sig_Pi_BIN_30k.anno	sig_Hp_BIN_60k.anno	sig_iHS_BIN_30k.anno
Bos taurus (BTA)	sig_Pi_BTA_30k.anno	sig_Hp_BTA_60k.anno	sig_iHS_BTA_30k.anno

2. Fixation index (F_ST), cross-population composite likelihood ratio (XP-CLR), and cross-population extended haplotype homozygosity (XP-EHH)

Group	FST	XP-CLR	XP-EHH
Indian indicine (IN) vs other five groups	sig_Fst_INvsOther_30k.anno	sig_XPCLR_INvsOther_30k.anno	sig_XPEHH_INvsOther_30k.anno
Chinese indicine(CN) vs other five groups	sig_Fst_CNvsOther_30k.anno	sig_XPCLR_CNvsOther_30k.anno	sig_XPEHH_CNvsOther_30k.anno
East Asian taurine (EA) vs other five groups	sig_Fst_EAvsOther_30k.anno	sig_XPCLR_EAvsOther_30k.anno	sig_XPEHH_EAvsOther_30k.anno
Eurasian taurine (EUA) vs other five groups	sig_Fst_EUAvsOther_30k.anno	sig_XPCLR_EUAvsOther_30k.anno	sig_XPEHH_EUAvsOther_30k.anno
European taurine (EUR) vs other five groups	sig_Fst_EURvsOther_30k.anno	sig_XPCLR_EURvsOther_30k.anno	sig_XPEHH_EURvsOther_30k.anno
African taurine (AFR) vs other five groups	sig_Fst_AFRvsOther_30k.anno	sig_XPCLR_AFRvsOther_30k.anno	sig_XPEHH_AFRvsOther_30k.anno
Bos indicus (BIN) vs Bos taurus (BTA)	sig_Fst_BINvsBTA_30k.anno	sig_XPCLR_BINvsBTA_30k.anno	sig_XPEHH_BINvsBTA_30k.anno