Ruminantia

About Genome Browser

In the old version, we released "Comparative Genomics" tracks (only for goat) that including 67-species synteny (47 de novo, 8 published ruminant genomes, and 12 outgroup species genomes) and five scales of measurements of evolutionary conservation to help analyze protein-coding genes, identify regulatory elements, reveal similarities and differences among species, and trace the course of evolution. With the rapid development of third-generation sequencing technology, genome quality has been greatly improved. We updated the "Comparative Genomics" tracks that providing 110-species synteny for three major livestock (cattle, sheep, and goat), 31 of which were assembled by third-generation sequencing technology. And also, in the latest version, we have added four-species new genome browsers, covering the genomes of all available domestic animals of the suborder Ruminantia. A wealth of epigenomic data, RNA-seq data, QTL and QWAS dataset are integrated into these genomes, providing functional annotations.

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Download Cattle Data
  • Mapping and Sequencing
    • GC percent
  • Genes and Gene Predictions
    • Cattle NCBI Genes
    • miRBase & miRTarBase
    • QTL
    • GWAS
  • Expression and Regulation
    • cattle H3K4Me3
    • cattle H3K27Ac
    • cattle H3K4Me1
    • cattle H3K27me3
    • cattle PolII
    • cattle CTCF
    • cattle ATAC-seq
    • human H3K4Me3
    • human H3K27Ac
    • human H3K4Me1
    • human H3K27Me3
    • human ATAC-seq
    • expreBar
  • Comparative Genomics
    • Cons 100 Vertebrates
    • Cons 30 Mammals
    • 110-way Multiz Align
Download Sheep Data
  • Mapping and Sequencing
    • GC percent
  • Genes and Gene Predictions
    • Sheep NCBI Genes
    • GWAS
    • QTL
  • Expression and Regulation
    • sheep H3K4Me3
    • sheep H3K27Ac
    • sheep H3K27Me3
    • sheep ATAC-seq
    • human H3K4Me3
    • human H3K27Ac
    • human H3K4Me1
    • human H3K27Me3
    • human ATAC-seq
    • expreBar
  • Comparative Genomics
    • Cons 100 Vertebrates
    • Cons 30 Mammals
    • 110-way Multiz Align
Download Goat Data
  • Mapping and Sequencing
    • GC percent
  • Genes and Gene Predictions
    • Goat NCBI Genes
    • Goat Ensembl Genes
    • Sheep NCBI Genes
    • Cattle NCBI Genes
    • Cattle Ensembl Genes
    • hg38 UCSC Genes
    • miRBase
    • GWAS
  • Expression and Regulation
    • goat rumen H3K27Ac
    • human H3K4Me3
    • human H3K27Ac
    • human H3K4Me1
    • human H3K27Me3
    • human ATAC-seq
    • regulatory regions
    • expreBar
  • Comparative Genomics
    • Cons 100 Vertebrates
    • Cons 30 Mammals
    • Ruminantia_phyloP
    • Pecora phyloP
    • Bovidae_phyloP
    • Ruminantia_phastCons
    • Pecora_phastCons
    • Bovidae_phastCons
    • 110-way Multiz Align