Schema for Chromatin State15 (dense track) - Chromatin state calculated by ChromHMM
  Database: ARS_UCD_addY    Primary Table: Rumen_epithelial_primary_cells_2weeks    Row Count: 1   Data last updated: 2021-08-12
fieldexampleSQL type info
fileName /gbdb/ARS_UCD_addY/ChIP/emi...varchar(255) values

Sample Rows
 
fileName
/gbdb/ARS_UCD_addY/ChIP/emission/Rumen_epithelial_primary_cells_2weeks_15_dense.bed.bb

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Chromatin State15 (dense track) (chromatinStateDense) Track Description
 

Description

This track displays the predicted chromatin states across different tissues.

Display Conventions and Configuration

The colours used for each of the chromatin states are as follows

State DESCRIPTION COLOR COLOR CODE
1 Open chromatin 205,140,149
2 Active element 255,212,128
3 Active TSS 255,48,48
4 Active promoter 255,215,0
5 Inactive/Weak Poised Promoter 255,248,250
6 Primed Enhancer 224,102,255
7 Active Enhancer 148,0,211
8 Weak Enhancer 255,250,255
9 Poised TSS/Promoter 238,44,44
10 PolyComb Repressed 209,238,238
11 Weak Repressed PolyComb 245,255,250
12 Poised Enhancer 238,210,238
13 Poised Enhancer 250,250,250
14 Insulator/Weak Primed Enhancer 119,136,153
15 Insulator 125,136,153