Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Cerebellum_adult_15 Row Count: 464   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 209400 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 13136 | int(10) unsigned | range |
blockSizes | 0,200,1200,200,200,600,400,... | longblob | |
chromStarts | 0,209400,210600,213800,2168... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 209400 | 158534000 | 205,140,149 | 13136 | 0,200,1200,200,200,600,400,200,1200,600,200,200,1000,2000,200,3800,13400,9600,1200,400,200,1000,200,200,600,600,2000,600,1800,40 ... | 0,209400,210600,213800,216800,218200,240800,241800,243200,247400,260400,262400,266200,273600,291200,297800,304400,318600,330200, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 474800 | 158534000 | 255,212,128 | 64 | 0,1400,2400,800,400,400,1800,400,200,200,200,600,600,600,400,400,200,600,400,400,200,1000,1200,200,400,200,200,400,200,600,200,4 ... | 0,474800,598600,604400,606600,5141000,10053200,25100200,29890800,43063600,43548400,45658200,46840600,50183400,53724200,58011400, ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 2925400 | 158534000 | 255,48,48 | 134 | 0,200,800,200,200,200,400,800,400,400,600,400,400,200,200,400,400,800,2200,400,1400,600,600,1000,600,200,200,400,400,200,1200,40 ... | 0,2925400,3210400,3758200,6111400,6852400,9585800,9869400,10786600,10787800,10859800,10860600,18735800,18736800,19228600,2316780 ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 620600 | 158534000 | 255,215,0 | 609 | 0,400,400,600,600,400,600,600,400,1200,600,400,800,800,1600,2400,800,400,1200,400,200,200,200,800,1400,800,400,400,400,200,200,6 ... | 0,620600,821200,880800,897400,1040200,1117000,1453600,1456400,1644200,1906400,1910600,1942000,1944600,1972400,1981800,1986600,21 ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 218800 | 158534000 | 255,248,250 | 6810 | 0,15200,200,11800,200,200,2400,800,200,8000,21200,2800,5000,12200,8200,19600,6800,7600,4600,6200,8600,42400,59800,34600,22600,60 ... | 0,218800,261800,279000,335200,370000,370400,392600,393600,409000,419600,442400,446200,511400,532600,543000,563200,582200,621000, ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 335400 | 158534000 | 224,102,255 | 2840 | 0,200,800,200,200,200,200,400,1000,600,1000,800,4800,600,600,400,200,400,1600,400,3400,1200,1200,1600,600,7800,400,800,400,600,8 ... | 0,335400,336800,393400,482000,620400,716800,879800,887400,892200,905200,967600,984600,1054400,1055600,1218600,1219800,1234800,13 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 10512000 | 158534000 | 148,0,211 | 38 | 0,200,200,200,200,600,200,400,200,400,400,200,1400,400,400,200,200,200,400,400,200,200,200,400,200,600,200,400,400,600,200,400,4 ... | 0,10512000,52399400,52518000,54139800,60693600,67707600,69447600,69560800,71481600,72348000,72393400,72441600,73200800,79164800, ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 5141400 | 158534000 | 255,250,255 | 103 | 0,1400,1400,200,1400,200,800,200,400,200,1600,1400,400,1000,1200,200,400,1000,200,200,1200,600,1800,200,1400,1600,1400,1400,200, ... | 0,5141400,6853200,20743400,20848400,25100600,29890000,35244400,42009600,43063800,43548600,45656800,45658800,46839600,53958200,56 ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 346800 | 158534000 | 238,44,44 | 1229 | 0,400,800,600,3600,1600,1800,1200,1800,2000,200,1600,1200,800,400,3600,1800,2400,2400,1800,2200,2000,400,1200,1600,400,1200,1000 ... | 0,346800,625600,820600,881400,1117600,1319800,1398000,1401200,1454200,1587800,1621600,1643000,1675400,1901000,1907000,1942800,19 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 234200 | 158534000 | 209,238,238 | 1711 | 0,2800,400,800,200,1800,200,400,2400,200,200,1200,2400,200,800,400,1400,200,200,200,3800,800,200,400,800,2800,400,1800,1200,800, ... | 0,234200,238000,249000,261200,276800,346200,351200,359600,369600,381000,381800,479600,482400,525600,581400,646400,981800,1319200 ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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