Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
  Database: ARS_UCD_addY    Primary Table: Cerebral_cortex_adult_15    Row Count: 464   Data last updated: 2021-08-12
fieldexampleSQL type info
bin 0smallint(5) unsigned range
chrom 1varchar(255) values
chromStart 0int(10) unsigned range
chromEnd 158534000int(10) unsigned range
name 1_OpenChromatinvarchar(255) values
score 0int(10) unsigned range
strand .char(1) values
thickStart 205000int(10) unsigned range
thickEnd 158534000int(10) unsigned range
itemRgb 13470869int(10) unsigned range
blockCount 6693int(10) unsigned range
blockSizes 0,200,4800,800,2000,11600,1...longblob  
chromStarts 0,205000,297800,306800,3078...longblob  

Sample Rows
 
binchromchromStartchromEndnamescorestrandthickStartthickEnditemRgbblockCountblockSizeschromStarts
0101585340001_OpenChromatin0.205000158534000205,140,14966930,200,4800,800,2000,11600,1000,400,2000,28400,600,400,600,1000,2000,15000,1000,800,400,2600,400,200,400,200,400,400,600,400,600, ...0,205000,297800,306800,307800,313000,336200,364600,367600,451200,549800,551200,570000,573800,589000,598600,648400,650000,656400, ...
0101585340002_ActiveElement0.656800158534000255,212,1289360,600,400,400,400,200,1200,200,400,600,200,200,600,1800,400,1400,800,400,200,400,800,400,400,600,400,400,800,400,600,200,1200,20 ...0,656800,888400,968400,1170200,1319800,1350200,1401000,1427000,1434800,1456200,1587800,1601800,1621400,1653800,1710800,1728800,1 ...
0101585340003_ActiveTSS0.881400158534000255,48,486760,1800,200,1200,1400,400,800,200,2200,800,2800,1200,1600,400,1000,1400,400,1400,200,1600,800,1400,400,200,800,400,1600,1600,2400 ...0,881400,883400,1117800,1320000,1398200,1401200,1453600,1454000,1643200,1907600,1943400,1984600,2026400,2027200,2046200,2047800, ...
0101585340004_ActivePromoter0.883200158534000255,215,08770,200,600,400,200,200,200,200,400,600,200,600,400,1000,600,400,400,200,400,200,400,1400,200,200,200,200,200,200,200,200,200,400, ...0,883200,883600,1117400,1119000,1453400,1453800,1643000,1644000,1907000,1910400,1942800,1944600,1983600,1986200,2026800,2028200, ...
0101585340005_Inactive/WeakPoisedPromoter0.1435800158534000255,248,2501990,17600,1000,1000,4600,2800,6200,3800,5000,1200,13600,12200,2600,9200,200,6600,200,1800,600,800,9400,5400,1400,3200,4800,200,640 ...0,1435800,1698400,1700000,1895200,1980800,2385400,2788200,2927200,3087600,3762400,5489800,9579600,10234000,10283400,10286600,107 ...
0101585340006_PrimedEnhancer0.881200158534000224,102,2552780,200,400,200,600,400,800,200,400,200,200,200,200,800,600,200,600,400,400,400,1000,400,200,200,600,600,400,400,200,800,400,400,2 ...0,881200,1117000,1344200,1699400,1721400,1733400,2313200,2538800,2539400,2876200,2926200,3515200,3515600,3830600,6106400,7115200 ...
0101585340007_ActiveEnhancer0.1397400158534000148,0,2111360,800,800,1000,600,600,600,1000,200,200,1200,600,2000,600,600,1000,800,200,200,200,600,400,1000,600,600,400,1800,400,600,1200,12 ...0,1397400,1398600,1402000,1956400,2265200,10314200,15770000,42224600,46059400,51783200,52214000,58001200,59023600,59024600,59062 ...
0101585340008_WeakEnhancer0.884200158534000255,250,25520490,400,600,400,1000,800,600,600,3000,1800,200,2200,400,600,1600,800,1200,200,6200,2600,1400,400,400,400,1600,400,400,600,200,400, ...0,884200,887800,888800,967400,1154000,1169600,1170600,1316800,1321400,1344400,1348000,1351400,1396800,1399400,1403000,1417200,14 ...
0101585340009_PoisedTSS/Promoter0.2497600158534000238,44,44730,2800,400,800,6600,400,400,2400,2800,200,600,600,800,400,200,600,200,200,800,1400,200,400,400,400,200,400,1000,600,200,2400,120 ...0,2497600,2524200,2540800,2543600,2551800,6042800,6111200,9582200,9585400,9869600,22906000,27410600,27412000,35123400,46389000,6 ...
01015853400010_PolyCombRepressed0.205800158534000209,238,23825730,39800,11800,37400,4200,3000,4800,2200,1800,8400,16000,400,13000,37200,8400,10200,2400,3000,4400,400,8000,4200,6400,400,12600,2 ...0,205800,247200,260200,302600,310000,324600,330000,333000,338000,347600,366200,369800,391800,430200,439600,480600,492800,497600, ...

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.

Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
 

Description

This track displays the predicted chromatin states across different tissues.

Display Conventions and Configuration

The colours used for each of the chromatin states are as follows

State DESCRIPTION COLOR COLOR CODE
1 Open chromatin 205,140,149
2 Active element 255,212,128
3 Active TSS 255,48,48
4 Active promoter 255,215,0
5 Inactive/Weak Poised Promoter 255,248,250
6 Primed Enhancer 224,102,255
7 Active Enhancer 148,0,211
8 Weak Enhancer 255,250,255
9 Poised TSS/Promoter 238,44,44
10 PolyComb Repressed 209,238,238
11 Weak Repressed PolyComb 245,255,250
12 Poised Enhancer 238,210,238
13 Poised Enhancer 250,250,250
14 Insulator/Weak Primed Enhancer 119,136,153
15 Insulator 125,136,153