Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Cerebral_cortex_adult_15 Row Count: 464   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 205000 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 6693 | int(10) unsigned | range |
blockSizes | 0,200,4800,800,2000,11600,1... | longblob | |
chromStarts | 0,205000,297800,306800,3078... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 205000 | 158534000 | 205,140,149 | 6693 | 0,200,4800,800,2000,11600,1000,400,2000,28400,600,400,600,1000,2000,15000,1000,800,400,2600,400,200,400,200,400,400,600,400,600, ... | 0,205000,297800,306800,307800,313000,336200,364600,367600,451200,549800,551200,570000,573800,589000,598600,648400,650000,656400, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 656800 | 158534000 | 255,212,128 | 936 | 0,600,400,400,400,200,1200,200,400,600,200,200,600,1800,400,1400,800,400,200,400,800,400,400,600,400,400,800,400,600,200,1200,20 ... | 0,656800,888400,968400,1170200,1319800,1350200,1401000,1427000,1434800,1456200,1587800,1601800,1621400,1653800,1710800,1728800,1 ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 881400 | 158534000 | 255,48,48 | 676 | 0,1800,200,1200,1400,400,800,200,2200,800,2800,1200,1600,400,1000,1400,400,1400,200,1600,800,1400,400,200,800,400,1600,1600,2400 ... | 0,881400,883400,1117800,1320000,1398200,1401200,1453600,1454000,1643200,1907600,1943400,1984600,2026400,2027200,2046200,2047800, ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 883200 | 158534000 | 255,215,0 | 877 | 0,200,600,400,200,200,200,200,400,600,200,600,400,1000,600,400,400,200,400,200,400,1400,200,200,200,200,200,200,200,200,200,400, ... | 0,883200,883600,1117400,1119000,1453400,1453800,1643000,1644000,1907000,1910400,1942800,1944600,1983600,1986200,2026800,2028200, ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 1435800 | 158534000 | 255,248,250 | 199 | 0,17600,1000,1000,4600,2800,6200,3800,5000,1200,13600,12200,2600,9200,200,6600,200,1800,600,800,9400,5400,1400,3200,4800,200,640 ... | 0,1435800,1698400,1700000,1895200,1980800,2385400,2788200,2927200,3087600,3762400,5489800,9579600,10234000,10283400,10286600,107 ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 881200 | 158534000 | 224,102,255 | 278 | 0,200,400,200,600,400,800,200,400,200,200,200,200,800,600,200,600,400,400,400,1000,400,200,200,600,600,400,400,200,800,400,400,2 ... | 0,881200,1117000,1344200,1699400,1721400,1733400,2313200,2538800,2539400,2876200,2926200,3515200,3515600,3830600,6106400,7115200 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 1397400 | 158534000 | 148,0,211 | 136 | 0,800,800,1000,600,600,600,1000,200,200,1200,600,2000,600,600,1000,800,200,200,200,600,400,1000,600,600,400,1800,400,600,1200,12 ... | 0,1397400,1398600,1402000,1956400,2265200,10314200,15770000,42224600,46059400,51783200,52214000,58001200,59023600,59024600,59062 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 884200 | 158534000 | 255,250,255 | 2049 | 0,400,600,400,1000,800,600,600,3000,1800,200,2200,400,600,1600,800,1200,200,6200,2600,1400,400,400,400,1600,400,400,600,200,400, ... | 0,884200,887800,888800,967400,1154000,1169600,1170600,1316800,1321400,1344400,1348000,1351400,1396800,1399400,1403000,1417200,14 ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 2497600 | 158534000 | 238,44,44 | 73 | 0,2800,400,800,6600,400,400,2400,2800,200,600,600,800,400,200,600,200,200,800,1400,200,400,400,400,200,400,1000,600,200,2400,120 ... | 0,2497600,2524200,2540800,2543600,2551800,6042800,6111200,9582200,9585400,9869600,22906000,27410600,27412000,35123400,46389000,6 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 205800 | 158534000 | 209,238,238 | 2573 | 0,39800,11800,37400,4200,3000,4800,2200,1800,8400,16000,400,13000,37200,8400,10200,2400,3000,4400,400,8000,4200,6400,400,12600,2 ... | 0,205800,247200,260200,302600,310000,324600,330000,333000,338000,347600,366200,369800,391800,430200,439600,480600,492800,497600, ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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