Schema for expreBar - expreBar |
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Database: ARS_UCD_addY Primary Table: expreBar Data last updated: 2021-06-14
Big Bed File: /gbdb/ARS_UCD_addY/trans/bigBarChart/cattle/output.bigBed
Item Count: 34,399
Format description: Tissue expreBar
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 105779329 | Start position of feature on chromosome | | chromEnd | 105779400 | End position of feature on chromosome | | name | TRNAW-CCA.63 | Name of transcript | | score | 0 | Score | | strand | . | + or - for strand | | name2 | TRNAW-CCA | Name of gene | | expCount | 98 | Number of tissues | | expScores | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 | Comma separated list of median expression in FPKM for each tissue. | | _dataOffset | 78240269 | Offset of sample data in data matrix file | | _dataLen | 2318 | Length of sample data row in data matrix file |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
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| 1 | 105779329 | 105779400 | TRNAW-CCA.63 | 0 | . | TRNAW-CCA | 98 | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0, ... | 78240269 | 2318 |
| 1 | 105877308 | 105908063 | OTOL1 | 222 | . | OTOL1 | 98 | 0.02,0.13,0.28,0.0,0.08,0.17,0.13,0.33,0.00,0.0,0.0,0.0,0.03,0.04,0.01,0.0,0.07,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.00,0.0,0.0 ... | 78264142 | 2313 |
| 1 | 105994397 | 105994774 | LOC112447001 | 0 | . | LOC112447001 | 98 | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.01,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 ... | 78289833 | 2318 |
| 1 | 106028381 | 106057302 | SPTSSB | 777 | . | SPTSSB | 98 | 16.42,46.53,0.01,4.58,9.52,47.21,46.76,16.5,0.88,0.69,4.05,30.68,11.95,0.20,0.47,0.68,0.08,4.80,0.69,2.56,2.71,23.63,0.98,1.32,1 ... | 78315620 | 2369 |
| 1 | 106064537 | 106066777 | LOC100138306 | 333 | . | LOC100138306 | 98 | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.01 ... | 78342805 | 2323 |
| 1 | 106143366 | 106146404 | LOC539747 | 111 | . | LOC539747 | 98 | 0.01,0.01,0.01,0.02,0.0,0.01,0.01,0.0,0.00,0.0,0.02,0.0,0.04,0.01,0.02,0.01,0.02,0.05,0.0,0.02,0.03,0.01,0.03,0.02,0.0,0.0,0.02, ... | 78372014 | 2315 |
| 1 | 106150166 | 106186579 | NMD3 | 888 | . | NMD3 | 98 | 7.22,11.56,7.04,7.4,16.41,10.95,13.56,16.35,9.2,8.95,11.51,7.69,11.98,13.56,12.64,15.95,12.77,9.16,8.93,12.6,27.0,15.91,9.77,6.5 ... | 78398095 | 2536 |
| 1 | 106346343 | 106378855 | B3GALNT1 | 777 | . | B3GALNT1 | 98 | 5.20,1.0,2.08,0.07,1.52,1.23,1.51,1.41,0.99,0.84,0.56,1.57,1.57,4.79,6.01,13.11,17.36,10.08,9.42,13.36,20.89,20.99,14.64,2.49,3. ... | 78424431 | 2423 |
| 1 | 106399686 | 106727153 | PPM1L | 555 | . | PPM1L | 98 | 1.72,1.27,0.09,1.47,1.03,0.40,3.32,2.14,0.59,0.66,0.64,0.78,0.79,0.37,0.69,2.10,0.99,2.02,8.17,3.89,3.97,2.77,0.78,0.31,1.37,2.3 ... | 78450204 | 2317 |
| 1 | 106463691 | 106496469 | LOC112447732 | 222 | . | LOC112447732 | 98 | 0.14,0.0,0.0,0.15,0.0,0.11,0.04,0.09,0.03,0.03,0.0,0.0,0.0,0.05,0.07,0.06,0.1,0.02,0.51,0.02,0.04,0.04,0.03,0.07,0.0,0.0,0.0,0.0 ... | 78473955 | 2320 |
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