Schema for Cattle_NCBI_Genes_Mapped_To_Yak - NCBI Gene Predictions for Yak |
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Database: BosGru3_0 Primary Table: Cattle_NCBI_Genes_Mapped_To_Yak Data last updated: 2021-06-11
Big Bed File: /gbdb/BosGru3_0/gene/BosGru3_0.gene.bb
Item Count: 74,257
Format description: Genes for yak with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(BosGru3_0:GCA_005887515.2) | | chromStart | 115098558 | Start position in chromosome | | chromEnd | 115098630 | End position in chromosome | | name | rna1873 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 115098630 | Start of where display should be thick (start codon) | | thickEnd | 115098630 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 72, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneSymbol | TRNAW-CCA | Gene Symbol | | searchText | rna1873(TRNAW-CCA) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 115098558 | 115098630 | rna1873 | 0 | - | 115098630 | 115098630 | 0 | 1 | 72, | 0, | TRNAW-CCA | rna1873(TRNAW-CCA) |
| 1 | 115200286 | 115231917 | NM_001192604.2 | 0 | - | 115200383 | 115211861 | 0 | 5 | 996,72,90,369,142, | 0,2184,5215,11214,31489, | OTOL1 | NM_001192604.2(OTOL1) |
| 1 | 115359004 | 115390685 | NM_001110774.1 | 0 | + | 115389156 | 115389387 | 0 | 3 | 107,94,1561, | 0,12080,30120, | SPTSSB | NM_001110774.1(SPTSSB) |
| 1 | 115507722 | 115547794 | NM_001075420.2 | 0 | - | 115508991 | 115547097 | 0 | 16 | 1400,71,107,73,113,146,118,97,79,91,129,81,97,132,56,122, | 0,1839,3197,4659,5507,12932,13980,19233,20016,28227,28731,30092,35570,37661,39331,39950, | NMD3 | NM_001075420.2(NMD3) |
| 1 | 115728774 | 115763958 | NM_001076963.1 | 0 | + | 115761882 | 115762878 | 0 | 6 | 22,89,63,96,478,1630, | 0,3190,26257,29299,33074,33554, | B3GALNT1 | NM_001076963.1(B3GALNT1) |
| 1 | 115785858 | 115984384 | XM_024991529.1 | 0 | - | 115791280 | 115895588 | 0 | 4 | 5769,161,175,87, | 0,9354,109693,198439, | PPM1L | XM_024991529.1(PPM1L) |
| 1 | 115790630 | 116150708 | NM_001099118.2 | 0 | - | 115791280 | 116150625 | 0 | 4 | 997,161,175,482, | 0,4582,104921,359596, | PPM1L | NM_001099118.2(PPM1L) |
| 1 | 115857202 | 115857844 | XR_003035888.1 | 0 | - | 115857844 | 115857844 | 0 | 1 | 642, | 0, | LOC112447732 | XR_003035888.1(LOC112447732) |
| 1 | 116138300 | 116141500 | XR_804431.3 | 0 | - | 116141500 | 116141500 | 0 | 3 | 42,46,205, | 0,1263,2995, | LOC104970982 | XR_804431.3(LOC104970982) |
| 1 | 116262565 | 116265151 | XM_015472845.2 | 0 | - | 116264418 | 116264997 | 0 | 1 | 2586, | 0, | ARL14 | XM_015472845.2(ARL14) |
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