Schema for NCBI Genes - NCBI Gene Predictions |
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Database: Btau_5_0_1 Primary Table: gene Data last updated: 2021-08-04
Big Bed File: /gbdb/Btau_5_0_1/gene/cattle.bb
Item Count: 43,423
Format description: Genes for Btau_5.0.1 with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 106279025 | Start position in chromosome | | chromEnd | 106281386 | End position in chromosome | | name | gene775 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | + | + or - for strand | | thickStart | 106281386 | Start of where display should be thick (start codon) | | thickEnd | 106281386 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 2 | Number of exon | | blockSizes | 174,988, | Comma separated list of exon sizes | | chromStarts | 0,1373, | Start positions relative to chromStart | | geneSymbol | LOC785220 | Gene Symbol |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol |
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| 1 | 106279025 | 106281386 | gene775 | 0 | + | 106281386 | 106281386 | 0 | 2 | 174,988, | 0,1373, | LOC785220 |
| 1 | 106517330 | 106517813 | gene776 | 0 | + | 106517813 | 106517813 | 0 | 2 | 193,200, | 0,283, | LOC100141216 |
| 1 | 106984225 | 106984297 | rna928 | 0 | - | 106984297 | 106984297 | 0 | 1 | 72, | 0, | TRNAW-CCA |
| 1 | 107082184 | 107112955 | NM_001192604.1 | 0 | - | 107082281 | 107093783 | 0 | 5 | 996,72,90,369,142, | 0,2186,5239,11238,30629, | OTOL1 |
| 1 | 107179805 | 107269592 | XR_001495760.1 | 0 | - | 107269592 | 107269592 | 0 | 3 | 421,106,214, | 0,5951,89573, | LOC104970981 |
| 1 | 107233234 | 107262149 | NM_001110774.1 | 0 | + | 107260617 | 107260848 | 0 | 3 | 107,94,1564, | 0,11139,27351, | SPTSSB |
| 1 | 107269806 | 107271673 | gene781 | 0 | + | 107271673 | 107271673 | 0 | 4 | 17,64,215,535, | 0,96,674,1332, | LOC100138306 |
| 1 | 107348957 | 107351214 | gene782 | 0 | + | 107351214 | 107351214 | 0 | 1 | 2257, | 0, | LOC539747 |
| 1 | 107354992 | 107391406 | NM_001075420.2 | 0 | - | 107356261 | 107390710 | 0 | 16 | 1400,71,107,73,113,146,118,97,79,91,129,81,97,135,56,122, | 0,1839,3197,4659,5507,11591,12646,16995,17774,25221,25725,26839,32355,34445,35674,36292, | NMD3 |
| 1 | 107496755 | 107537023 | gene784 | 0 | - | 107537023 | 107537023 | 0 | 5 | 659,506,116,141,71, | 0,22001,22733,36568,40197, | LOC100336549 |
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