Schema for SNPs (432) - SNPs for 432 cattle accessions |
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Database: Btau_5_0_1 Primary Table: SNPs Data last updated: 2018-06-10
Big Bed File: /gbdb/Btau_5_0_1/snp/Btau_5.0.1_SNPs.bb
Item Count: 60,439,391
Format description: SNPs for Btau_5.0.1
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 105981933 | Start position in chromosome | | chromEnd | 105981934 | End position in chromosome | | name | 1:105981934 | SNP postion | | allele | A/G | Allele | | MAF | 0.149 | Minor allele frequencies | | consequenceType | intergenic_variant | ConsequenceType | | geneSymbol | LOC782622,LOC785220 | Gene Symbol | | UMD3_1_1_Pos | 1:105601541 | UMD3_1_1_Pos | | ARS_UCD1_2_Pos | 1:104781567 | ARS_UCD1_2_Pos | | name2 | rs721026498 | dbSNP rsid |
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Sample Rows
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| chrom | chromStart | chromEnd | name | allele | MAF | consequenceType | geneSymbol | UMD3_1_1_Pos | ARS_UCD1_2_Pos | name2 |
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| 1 | 105981933 | 105981934 | 1:105981934 | A/G | 0.149 | intergenic_variant | LOC782622,LOC785220 | 1:105601541 | 1:104781567 | rs721026498 |
| 1 | 105981992 | 105981993 | 1:105981993 | T/A | 0.005 | intergenic_variant | LOC782622,LOC785220 | 1:105601600 | 1:104781626 | |
| 1 | 105982050 | 105982051 | 1:105982051 | C/T | 0.005 | intergenic_variant | LOC782622,LOC785220 | 1:105601658 | 1:104781684 | |
| 1 | 105982057 | 105982058 | 1:105982058 | G/A | 0.001 | intergenic_variant | LOC782622,LOC785220 | 1:105601665 | 1:104781691 | |
| 1 | 105982064 | 105982065 | 1:105982065 | G/T | 0.002 | intergenic_variant | LOC782622,LOC785220 | 1:105601672 | 1:104781698 | rs515914134 |
| 1 | 105982080 | 105982081 | 1:105982081 | T/G | 0.393 | intergenic_variant | LOC782622,LOC785220 | 1:105601688 | 1:104781714 | rs381322651 |
| 1 | 105982084 | 105982085 | 1:105982085 | G/A | 0.015 | intergenic_variant | LOC782622,LOC785220 | 1:105601692 | 1:104781718 | |
| 1 | 105982194 | 105982195 | 1:105982195 | G/A | 0.006 | intergenic_variant | LOC782622,LOC785220 | 1:105601802 | 1:104781828 | |
| 1 | 105982243 | 105982244 | 1:105982244 | A/C | 0.001 | intergenic_variant | LOC782622,LOC785220 | 1:105601851 | 1:104781877 | |
| 1 | 105982248 | 105982249 | 1:105982249 | T/C | 0.002 | intergenic_variant | LOC782622,LOC785220 | 1:105601856 | 1:104781882 | |
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