Schema for CNVR Bar - Haploid Copy Number |
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Database: Btau_5_0_1 Primary Table: cnvBar Data last updated: 2018-05-22
Big Bed File: /gbdb/Btau_5_0_1/cnv/mergeVersion/cnv_Cattle.bb
Item Count: 76,634
Format description: Tissue cnvBar
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 105981601 | Start position of feature on chromosome | | chromEnd | 105985600 | End position of feature on chromosome | | name | CNV3418 | Name of transcript | | score | 111 | Score | | strand | + | + or - for strand | | name2 | CNV3418 | Name of gene | | expCount | 49 | Number of tissues | | expScores | 1.01,0.97,1.02,0.99,0.95,1.05,1.03,1.03,1.04,1.03,0.9,1.0,0.72,0.66,0.95,0.78,1.26,1.01,0.96,0.99,1.04,1.02,0.75,0.84,0.77,0.9,0.97,1.05,0.92,0.82,0.96,0.83,0.88,0.94,0.88,0.81,0.99,1.03,1.09,1.05,1.21,0.95,1.02,0.96,0.97,1.06,1.01,0.95,1.02 | Comma separated list of median expression in RPKM for each tissue. | | _dataOffset | 7411421 | Offset of sample data in data matrix file | | _dataLen | 2168 | Length of sample data row in data matrix file |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
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| 1 | 105981601 | 105985600 | CNV3418 | 111 | + | CNV3418 | 49 | 1.01,0.97,1.02,0.99,0.95,1.05,1.03,1.03,1.04,1.03,0.9,1.0,0.72,0.66,0.95,0.78,1.26,1.01,0.96,0.99,1.04,1.02,0.75,0.84,0.77,0.9,0 ... | 7411421 | 2168 |
| 1 | 106014001 | 106020400 | CNV3419 | 111 | + | CNV3419 | 49 | 0.98,0.98,1.02,0.99,0.99,0.99,1.07,1.05,0.96,1.02,0.93,1.35,0.67,0.63,0.94,0.85,0.97,0.98,0.97,1.01,0.97,0.94,0.62,0.82,0.76,0.9 ... | 7413589 | 2168 |
| 1 | 106024401 | 106029200 | CNV3420 | 111 | + | CNV3420 | 49 | 1.0,1.01,0.98,1.0,1.02,0.99,1.06,1.01,0.99,0.99,1.01,1.22,0.77,0.76,1.07,0.88,1.1,1.05,0.92,0.86,0.95,0.99,0.79,0.97,0.78,0.92,0 ... | 7415757 | 2168 |
| 1 | 106082001 | 106086000 | CNV3421 | 333 | + | CNV3421 | 49 | 0.96,1.00,1.05,1.03,0.98,1.02,1.0,0.99,1.03,1.01,0.91,0.93,0.95,0.95,0.98,1.11,0.89,1.02,1.20,1.28,0.98,1.0,1.01,1.16,1.13,1.06, ... | 7417925 | 2168 |
| 1 | 106110401 | 106113200 | CNV3422 | 111 | + | CNV3422 | 49 | 0.9,0.98,1.01,0.99,0.88,0.93,1.09,0.96,0.98,0.92,0.93,0.95,0.94,0.86,0.99,1.03,1.12,0.97,1.25,1.31,0.96,1.07,0.89,0.9,0.91,1.0,1 ... | 7420093 | 2168 |
| 1 | 106154401 | 106157200 | CNV3423 | 222 | + | CNV3423 | 49 | 1.02,0.99,1.07,1.01,1.01,1.05,1.0,1.19,0.99,1.07,1.05,0.5,0.89,0.98,1.13,0.95,1.01,0.96,0.96,0.77,0.94,1.05,0.83,0.99,0.97,1.01, ... | 7422261 | 2168 |
| 1 | 106204801 | 106209200 | CNV3424 | 111 | + | CNV3424 | 49 | 1.03,1.05,1.01,1.04,0.97,1.03,1.06,0.96,1.03,1.02,0.9,1.27,0.7,0.71,0.97,0.85,1.03,1.07,1.03,0.89,0.9,0.94,0.66,0.89,0.69,0.87,0 ... | 7424429 | 2168 |
| 1 | 106214401 | 106218400 | CNV3425 | 0 | + | CNV3425 | 49 | 0.96,0.91,0.95,0.98,1.00,0.97,1.02,0.98,0.96,1.01,0.86,1.12,0.71,0.6,0.93,0.75,0.93,0.88,0.84,0.9,0.92,0.86,0.69,0.88,0.63,0.82, ... | 7426597 | 2168 |
| 1 | 106220801 | 106223600 | CNV3426 | 333 | + | CNV3426 | 49 | 1.0,0.98,1.05,1.02,0.96,1.06,1.12,1.0,1.0,1.01,1.06,0.54,1.02,1.06,0.93,1.08,0.91,1.09,1.1,0.92,1.05,0.89,1.09,1.03,1.09,1.17,1. ... | 7428765 | 2168 |
| 1 | 106233201 | 106236000 | CNV3427 | 222 | + | CNV3427 | 49 | 1.02,1.02,1.06,1.0,1.02,1.00,0.97,0.98,1.01,1.01,0.99,1.3,0.87,0.96,0.98,1.04,1.16,1.19,1.1,0.91,0.84,0.95,0.79,0.84,0.97,1.03,0 ... | 7430933 | 2168 |
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