Schema for SNPs (928) - SNPs for 928 chicken samples

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Schema for SNPs (928) - SNPs for 928 chicken samples

Database: GRCg6a Primary Table: SNPs Data last updated: 2021-10-20
Big Bed File: /gbdb/GRCg6a/SNP_indel/Chicken_SNP.bb
Item Count: 22,774,953
Format description: SNPs for GRCg6a

field	example	description
`chrom`	1	Reference sequence chromosome or scaffold
`chromStart`	131738935	Start position in chromosome
`chromEnd`	131738936	End position in chromosome
`name`	1:131738936	SNP postion
`allele`	G/A	Allele
`MAF`	0.004	Minor allele frequency
`GRCg7b_Pos`	1:130545737	GRCg7b position
`dbSNP_rsid`	novel	dbSNP rsid

Sample Rows

chrom	chromStart	chromEnd	name	allele	MAF	GRCg7b_Pos	dbSNP_rsid
1	131738935	131738936	1:131738936	G/A	0.004	1:130545737	novel
1	131738937	131738938	1:131738938	G/A	0.002	1:130545739	novel
1	131738969	131738970	1:131738970	G/C	0.051	1:130545771	rs741494355
1	131738985	131738986	1:131738986	A/G	0.006	1:130545787	novel
1	131738990	131738991	1:131738991	G/C	0.068	1:130545792	rs1059378153
1	131739146	131739147	1:131739147	A/C	0.001	1:130545948	novel
1	131739231	131739232	1:131739232	A/C	0.003	1:130546033	novel
1	131739301	131739302	1:131739302	A/G	0.004	1:130546103	novel
1	131739326	131739327	1:131739327	T/C	0.002	1:130546128	novel
1	131739338	131739339	1:131739339	A/T	0.046	1:130546140	rs1058569288