Schema for Indels (928) - Indels for 928 chicken samples

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Schema for Indels (928) - Indels for 928 chicken samples

Database: GRCg7b Primary Table: Indels Data last updated: 2021-10-20
Big Bed File: /gbdb/GRCg7b/SNP_indel/Chicken_Indel.bb
Item Count: 2,797,358
Format description: Indels for GRCg7b

field	example	description
`chrom`	1	Reference sequence chromosome or scaffold
`chromStart`	130966117	Start position in chromosome
`chromEnd`	130966118	End position in chromosome
`name`	1:130966118	SNP postion and dbSNP rsid
`allele`	AAGT/A	Allele
`MAF`	0.001	Minor allele frequency
`GRCg6a_Pos`	1:132157501	GRCg6a position
`dbSNP_rsid`	novel	dbSNP rsid

Sample Rows

chrom	chromStart	chromEnd	name	allele	MAF	GRCg6a_Pos	dbSNP_rsid
1	130966117	130966118	1:130966118	AAGT/A	0.001	1:132157501	novel
1	130966393	130966394	1:130966394	TGTTTGTG/T	0.001	1:132157777	novel
1	130966711	130966712	1:130966712	AAG/A	0.001	1:132158095	novel
1	130967019	130967020	1:130967020	AAT/A	0.001	1:132158403	novel
1	130967093	130967094	1:130967094	CAG/C	0.001	1:132158477	novel
1	130967894	130967895	1:130967895	CTACTT/C	0.001	1:132159279	novel
1	130967969	130967970	1:130967970	C/CA	0.001	1:132159354	novel
1	130968189	130968190	1:130968190	AG/A	0.002	1:132159574	novel
1	130969437	130969438	1:130969438	TCATTTCA/T	0.002	1:132160822	novel
1	130970184	130970185	1:130970185	A/ATGTTGCATGT	0.002	1:132161569	novel