Schema for Gap - Gap Location

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Schema for Gap - Gap Location

Database: Oar_rambouillet_v1_0_addY Primary Table: gap Row Count: 5,134 Data last updated: 2021-06-09

field	example	SQL type	info
`bin`	594	`smallint(6)`	range
`chrom`	1	`varchar(255)`	values
`chromStart`	1293181	`int(10) unsigned`	range
`chromEnd`	1293249	`int(10) unsigned`	range
`ix`	2	`int(11)`	range
`n`	N	`char(1)`	values
`size`	68	`int(10) unsigned`	range
`type`	contig	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
594	1	1293181	1293249	2	N	68	contig	yes
598	1	1742619	1742644	4	N	25	contig	yes
598	1	1765223	1765323	6	N	100	contig	yes
608	1	3068559	3068659	8	N	100	contig	yes
617	1	4268607	4268707	10	N	100	contig	yes
617	1	4296728	4296753	12	N	25	contig	yes
617	1	4324732	4324832	14	N	100	contig	yes
638	1	6972672	6972697	16	N	25	contig	yes
638	1	7021978	7022078	18	N	100	contig	yes
643	1	7694547	7694647	20	N	100	contig	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.