Schema for Gap - Gap Location

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Schema for Gap - Gap Location

Database: panGoat Primary Table: gap Row Count: 19,001 Data last updated: 2019-10-19

field	example	SQL type	info
`bin`	870	`smallint(6)`	range
`chrom`	1	`varchar(255)`	values
`chromStart`	37379625	`int(10) unsigned`	range
`chromEnd`	37379632	`int(10) unsigned`	range
`ix`	2	`int(11)`	range
`n`	N	`char(1)`	values
`size`	7	`int(10) unsigned`	range
`type`	contig	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
870	1	37379625	37379632	2	N	7	contig	yes
896	1	40873558	40873583	4	N	25	contig	yes
904	1	41889378	41889384	6	N	6	contig	yes
1096	1	67018890	67018915	8	N	25	contig	yes
1098	1	67282568	67282593	10	N	25	contig	yes
1526	1	123344563	123344588	12	N	25	contig	yes
1683	1	143923075	143923100	14	N	25	contig	yes
1683	1	143945069	143945074	16	N	5	contig	yes
1683	1	143984514	143984539	18	N	25	contig	yes
1684	1	144116673	144116678	20	N	5	contig	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.