Schema for Gap - Gap Location

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Schema for Gap - Gap Location

Database: panPig Primary Table: gap Row Count: 40,358 Data last updated: 2017-06-24

field	example	SQL type	info
`bin`	1278	`smallint(6)`	range
`chrom`	1	`varchar(255)`	values
`chromStart`	90927422	`int(10) unsigned`	range
`chromEnd`	90927522	`int(10) unsigned`	range
`ix`	2	`int(11)`	range
`n`	N	`char(1)`	values
`size`	100	`int(10) unsigned`	range
`type`	contig	`varchar(255)`	values
`bridge`	yes	`varchar(255)`	values

Sample Rows

bin	chrom	chromStart	chromEnd	ix	n	size	type	bridge
1278	1	90927422	90927522	2	N	100	contig	yes
1286	1	91945429	91945529	4	N	100	contig	yes
1293	1	92881119	92881219	6	N	100	contig	yes
2223	1	214753360	214753460	8	N	100	contig	yes
701	10	15288844	15288944	143	N	100	contig	yes
731	10	19197730	19249750	145	N	52020	scaffold	no
775	10	24976564	25026564	147	N	50000	scaffold	no
856	10	35627166	35627167	149	N	1	contig	yes
893	10	40397048	40397049	151	N	1	contig	yes
733	11	19474953	19475053	154	N	100	contig	yes

Note: all start coordinates in our database are 0-based, not 1-based. See explanation here.