Schema for expreBar - expreBar |
|---|
| |
Database: panPig Primary Table: expreBar Data last updated: 2018-01-15
Big Bed File: /gbdb/panPig/trans/barchart_panPigExpr.bb
Item Count: 38,467
Format description: Tissue expreBar
| field | example | description |
|---|
| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 183116401 | Start position of feature on chromosome | | chromEnd | 183117027 | End position of feature on chromosome | | name | LOC100152145 | Name of transcript | | score | 0 | Score | | strand | + | + or - for strand | | name2 | LOC100152145 | Name of gene | | expCount | 20 | Number of tissues | | expScores | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.01,0.0,0.0,0.0,0.0,0.0,0.0 | Comma separated list of median expression in RPKM for each tissue. | | _dataOffset | 3363943 | Offset of sample data in data matrix file | | _dataLen | 382 | Length of sample data row in data matrix file |
|
| |
|
|
|
Sample Rows
|
|---|
| |
| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
|---|
| 1 | 183116401 | 183117027 | LOC100152145 | 0 | + | LOC100152145 | 20 | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.01,0.0,0.0,0.0,0.0,0.0,0.0 | 3363943 | 382 |
| 1 | 183316313 | 183364666 | LOC110262205 | 444 | - | LOC110262205 | 20 | 0.0,0.0,0.0,0.0,0.0,0.00,0.00,0.0,0.0,0.0,0.0,0.0,1.27,2.16,0.0,0.0,0.0,0.00,0.00,0.0 | 8373809 | 394 |
| 1 | 183415988 | 183792458 | LOC102167290 | 777 | - | LOC102167290 | 20 | 0.92,0.89,2.00,2.18,0.38,0.28,0.82,0.58,3.76,4.4,1.18,1.36,1.58,1.12,0.65,0.90,1.15,1.16,1.17,1.18 | 5343388 | 463 |
| 1 | 183792605 | 183809178 | CDKN3 | 777 | + | CDKN3 | 20 | 2.76,3.33,0.71,0.73,1.05,1.42,1.56,1.40,1.21,1.15,1.45,1.52,6.15,4.67,1.52,1.99,2.17,1.91,0.73,0.66 | 1113606 | 454 |
| 1 | 183811231 | 183829219 | CNIH1 | 777 | - | CNIH1 | 20 | 1.30,1.27,1.59,1.49,1.05,1.06,1.42,0.63,1.89,1.9,1.28,1.21,1.56,1.68,1.08,0.75,1.67,1.73,1.51,1.36 | 1308960 | 457 |
| 1 | 183830549 | 183830866 | MSTRG.2961 | 222 | . | MSTRG.2961 | 20 | 0.0,0.0,0.21,0.05,0.0,0.0,0.02,0.0,0.0,0.06,0.0,0.10,0.0,0.02,0.01,0.03,0.16,0.59,0.0,0.0 | 11833471 | 398 |
| 1 | 183846671 | 183863396 | GMFB | 888 | - | GMFB | 20 | 2.44,2.53,5.24,5.32,3.43,3.18,1.16,1.11,5.97,6.36,4.13,4.66,3.81,4.25,1.73,1.92,5.30,5.79,3.41,3.08 | 2485791 | 453 |
| 1 | 183863458 | 183903803 | CGRRF1 | 666 | + | CGRRF1 | 20 | 0.63,0.72,1.91,2.24,1.23,1.65,0.65,0.58,1.87,1.44,1.24,1.31,2.07,2.54,0.75,0.74,1.22,1.19,1.20,1.22 | 1181650 | 460 |
| 1 | 183879418 | 183915288 | MSTRG.2967 | 666 | - | MSTRG.2967 | 20 | 2.71,2.10,1.37,0.97,0.14,0.13,1.38,0.40,0.52,0.4,0.78,0.40,1.01,0.81,1.84,0.83,0.89,0.63,0.51,0.37 | 11843618 | 463 |
| 1 | 183915336 | 184140122 | SAMD4A | 888 | + | SAMD4A | 20 | 6.03,15.11,2.40,1.86,0.58,0.51,2.79,3.70,4.20,3.98,2.31,2.53,1.75,1.85,3.49,4.90,3.41,3.77,2.46,2.85 | 15010645 | 467 |
|
| |
|
|
|