Schema for cnvBar - Haploid Copy Number |
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Database: panPig Primary Table: cnvBar Data last updated: 2017-12-28
Big Bed File: /gbdb/panPig/cnv/12_27/cnv_panPig.bb
Item Count: 52,002
Format description: Tissue cnvBar
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 183093601 | Start position of feature on chromosome | | chromEnd | 183096000 | End position of feature on chromosome | | name | CNV1008 | Name of transcript | | score | 555 | Score | | strand | + | + or - for strand | | name2 | CNV1008 | Name of gene | | expCount | 17 | Number of tissues | | expScores | 1.17,0.98,1.1,1.23,0.41,0.44,0.68,0.66,0.53,0.45,0.42,1.0,1.33,0.39,0.77,0.53,0.38 | Comma separated list of median expression in RPKM for each tissue. | | _dataOffset | 435786 | Offset of sample data in data matrix file | | _dataLen | 433 | Length of sample data row in data matrix file |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
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| 1 | 183093601 | 183096000 | CNV1008 | 555 | + | CNV1008 | 17 | 1.17,0.98,1.1,1.23,0.41,0.44,0.68,0.66,0.53,0.45,0.42,1.0,1.33,0.39,0.77,0.53,0.38 | 435786 | 433 |
| 1 | 183166001 | 183168000 | CNV1009 | 888 | + | CNV1009 | 17 | 1.2,1.04,1.19,0.96,1.56,1.25,1.48,1.22,1.31,1.42,1.41,1.43,1.40,1.29,1.32,1.28,1.35 | 436219 | 433 |
| 1 | 183224401 | 183226400 | CNV1010 | 333 | + | CNV1010 | 17 | 0.55,0.46,0.71,0.89,0.36,0.38,0.41,0.43,0.41,0.4,0.42,0.39,0.71,0.37,0.39,0.44,0.44 | 436652 | 433 |
| 1 | 183271201 | 183275200 | CNV1011 | 666 | + | CNV1011 | 17 | 1.01,0.96,0.98,0.97,0.95,0.93,0.98,0.91,0.99,0.97,0.95,0.97,1.06,0.0,0.48,0.75,0.99 | 437085 | 433 |
| 1 | 183418401 | 183422000 | CNV1012 | 444 | + | CNV1012 | 17 | 0.95,0.66,0.91,0.84,0.51,0.61,0.65,0.73,0.67,0.59,0.67,0.54,0.86,0.67,0.58,0.59,0.74 | 437518 | 433 |
| 1 | 183630801 | 183632800 | CNV1013 | 666 | + | CNV1013 | 17 | 1.02,0.72,1.01,1.1,0.82,0.82,0.89,0.92,0.84,0.84,0.72,0.86,1.02,0.68,0.66,0.67,0.88 | 437951 | 433 |
| 1 | 183769601 | 183771600 | CNV1014 | 333 | + | CNV1014 | 17 | 0.71,0.52,0.79,0.82,0.61,0.59,0.56,0.59,0.53,0.55,0.51,0.54,0.67,0.55,0.57,0.54,0.6 | 438384 | 433 |
| 1 | 183863201 | 183865200 | CNV1015 | 555 | + | CNV1015 | 17 | 0.88,0.6,0.84,1.1,0.63,0.71,0.76,0.77,0.73,0.62,0.78,0.65,0.87,0.73,0.62,0.69,0.71 | 438817 | 433 |
| 1 | 183914401 | 183917200 | CNV1016 | 555 | + | CNV1016 | 17 | 1.02,0.71,1.07,0.98,0.47,0.63,0.72,1.04,0.72,0.52,0.65,0.55,1.0,0.72,0.73,0.63,0.71 | 439250 | 433 |
| 1 | 185575601 | 185577600 | CNV1017 | 444 | + | CNV1017 | 17 | 0.77,0.77,0.84,0.87,0.64,0.68,0.67,0.64,0.69,0.62,0.61,0.68,0.77,0.61,0.68,0.64,0.7 | 439683 | 433 |
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