Schema for SNPs(968) - SNPs for 968 wheat accessions
  Database: wheat_V2    Primary Table: SNPs Data last updated: 2020-08-08
Big Bed File: /gbdb/wheat_V2/snp/SNP.bb
Item Count: 6,942,743
Format description: SNPs for wheat
fieldexampledescription
chrom1AReference sequence chromosome or scaffold
chromStart396070285Start position in chromosome
chromEnd396070286End position in chromosome
name1A:396070286SNP postion
alleleC/TAllele
MAF0.006Minor allele frequencies
sampleNumber614Effective sample size
consequenceTypeintergenic_variantConsequenceType
geneSymbolTraesCS1A02G225300-TraesCS1A02G225600Gene Symbol

Sample Rows
 
chromchromStartchromEndnamealleleMAFsampleNumberconsequenceTypegeneSymbol
1A3960702853960702861A:396070286C/T0.006614intergenic_variantTraesCS1A02G225300-TraesCS1A02G225600
1A3960702913960702921A:396070292T/C0.000783intergenic_variantTraesCS1A02G225300-TraesCS1A02G225600
1A3960977623960977631A:396097763G/A0.08588upstream_gene_variantTraesCS1A02G225600
1A3960978403960978411A:396097841A/G0.02387upstream_gene_variantTraesCS1A02G225600
1A3960980323960980331A:396098033G/C0.04088upstream_gene_variantTraesCS1A02G225600
1A3960982113960982121A:396098212C/T0.02987upstream_gene_variantTraesCS1A02G225600
1A3960982193960982201A:396098220T/C0.02387upstream_gene_variantTraesCS1A02G225600
1A3960982423960982431A:396098243G/A0.37886upstream_gene_variantTraesCS1A02G225600
1A3960982853960982861A:396098286T/C0.11587upstream_gene_variantTraesCS1A02G225600
1A3960983163960983171A:396098317C/T0.20187upstream_gene_variantTraesCS1A02G225600