Control track and group visibility more selectively below.
|
|
|---|
| Base Position |
| Chromosome position in bases. (Clicks here zoom in 3x) |
| Gap |
| Gap Location |
| GC percent |
| GC Percent in 5-Base Windows |
| Short Match |
| Perfect Matches to Short Sequence () |
|
|
|
|
|---|
| Cattle NCBI Genes |
| NCBI Gene Predictions for cattle(ARS-UCD1.2_Btau5.0.1Y) |
| miRBase & miRTarBase |
| miRNA information provided by miRBase and miRTarBase |
| QTL |
| QTL marker from Animal QTL Database |
| GWAS |
| GWAS data collected from GWAS Atlas |
|
|
|
|
|---|
| cattle H3K4Me3(40) |
| H3K4me3 ChIP-seq of cattle multiple tissues or cells |
| cattle H3K27Ac(21) |
| H3K27ac ChIP-seq of cattle multiple tissues or cells |
| cattle H3K4Me1(20) |
| H3K4me1 ChIP-seq of cattle multiple tissues or cells |
| cattle H3K27Me3(29) |
| H3K27me3 ChIP-seq of cattle multiple tissues or cells |
| cattle PolII(4) |
| PolII ChIP-seq of cattle multiple tissues or cells |
| cattle CTCF(16) |
| CTCF ChIP-seq of cattle multiple tissues or cells |
| SCNT |
| Somatic cell nuclear transfer |
| cattle ATAC-seq(66) |
| ATAC-seq of cattle multiple tissues or cells |
| human H3K4Me3(192) |
| H3K4Me3 CHIP-seq of human multiple tissues or cells |
| human H3K27Ac(141) |
| H3K27Ac CHIP-seq of human multiple tissues or cells |
| human H3K4Me1(196) |
| H3K4Me1 CHIP-seq of human multiple tissues or cells |
| human H3K27Me3(197) |
| H3K27Me3 CHIP-seq of human multiple tissues or cells |
| human ATAC-seq(107) |
| ATAC-seq of human multiple tissues |
| Chromatin State15 (dense track) |
| Chromatin state calculated by ChromHMM |
| Chromatin State15 (expanded track) |
| Chromatin state calculated by ChromHMM |
| expreBar |
| expreBar |
|
|
|
|
|---|
| Vertebrates_phastCons... |
| Vertebrates_phastCons |
| Vert. Cons (phastCons) |
| Vertebrate Conservation by phastCons, converted from human data on the UCSC Genome Browser website. |
| Vert. El (phastCons) |
| Vertebrate Conserved Elements, converted from human data on the UCSC Genome Browser website. |
| Mammals_phastCons... |
| Mammals_phastCons |
| Mammal Cons (phastCons) |
| Mammalian Conservation by phastCons, converted from human data on the UCSC Genome Browser website. |
| Mammal El (phastCons) |
| Mammalian Conserved Elements, converted from human data on the UCSC Genome Browser website. |
| Vertebrates_phyloP |
| Vertebrate Basewise Conservation by PhyloP, converted from human data on the UCSC Genome Browser website. |
| Mammals_phyloP |
| Mammal Basewise Conservation by PhyloP, converted from human data on the UCSC Genome Browser website. |
| 110-way Multiz Align |
| Multiz alignments of 78 ruminants and 32 outgroup species |
|
|