Schema for Cattle NCBI Genes - NCBI Gene Predictions for cattle(ARS-UCD1.2_Btau5.0.1Y) |
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Database: ARS_UCD_addY Primary Table: gene Data last updated: 2018-12-27
Big Bed File: /gbdb/ARS_UCD_addY/gene/ARS_UCD_addY.gene.bb
Item Count: 82,534
Format description: Genes for ARS_UCD_addY with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold (ARS_UCD_addY:GCA_002263795.2,GCA_000003205.6) | | chromStart | 105779328 | Start position in chromosome | | chromEnd | 105779400 | End position in chromosome | | name | rna1873 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 105779400 | Start of where display should be thick (start codon) | | thickEnd | 105779400 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 72, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneSymbol | TRNAW-CCA | Gene Symbol | | searchText | rna1873(TRNAW-CCA) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 105779328 | 105779400 | rna1873 | 0 | - | 105779400 | 105779400 | 0 | 1 | 72, | 0, | TRNAW-CCA | rna1873(TRNAW-CCA) |
| 1 | 105877307 | 105908063 | NM_001192604.2 | 0 | - | 105877404 | 105888889 | 0 | 5 | 996,72,90,369,142, | 0,2186,5225,11221,30614, | OTOL1 | NM_001192604.2(OTOL1) |
| 1 | 105994396 | 105994774 | gene857 | 0 | + | 105994774 | 105994774 | 0 | 1 | 378, | 0, | LOC112447001 | gene857(LOC112447001) |
| 1 | 106028380 | 106057302 | NM_001110774.1 | 0 | + | 106055770 | 106056001 | 0 | 3 | 107,94,1564, | 0,11142,27358, | SPTSSB | NM_001110774.1(SPTSSB) |
| 1 | 106064536 | 106066777 | gene859 | 0 | + | 106066777 | 106066777 | 0 | 3 | 5,195,487, | 0,1116,1754, | LOC100138306 | gene859(LOC100138306) |
| 1 | 106143365 | 106146404 | gene860 | 0 | + | 106146404 | 106146404 | 0 | 1 | 3039, | 0, | LOC539747 | gene860(LOC539747) |
| 1 | 106150165 | 106186579 | NM_001075420.2 | 0 | - | 106151434 | 106185883 | 0 | 16 | 1400,71,107,73,113,146,118,97,79,91,129,81,97,135,56,122, | 0,1839,3197,4659,5507,11591,12647,16996,17775,25222,25726,26840,32355,34445,35674,36292, | NMD3 | NM_001075420.2(NMD3) |
| 1 | 106346342 | 106378855 | NM_001076963.1 | 0 | + | 106376775 | 106377770 | 0 | 6 | 22,89,63,96,477,1635, | 0,3186,23591,26622,30399,30878, | B3GALNT1 | NM_001076963.1(B3GALNT1) |
| 1 | 106399685 | 106576735 | XM_024991529.1 | 0 | - | 106405112 | 106496522 | 0 | 4 | 5774,162,175,87, | 0,9356,96800,176963, | PPM1L | XM_024991529.1(PPM1L) |
| 1 | 106404462 | 106727153 | NM_001099118.2 | 0 | - | 106405112 | 106727070 | 0 | 4 | 997,162,175,482, | 0,4579,92023,322209, | PPM1L | NM_001099118.2(PPM1L) |
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