Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Hypothalamus_adult_15 Row Count: 465   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 138200 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 4045 | int(10) unsigned | range |
blockSizes | 0,1200,400,400,600,3000,560... | longblob | |
chromStarts | 0,138200,235600,238000,2474... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 138200 | 158534000 | 205,140,149 | 4045 | 0,1200,400,400,600,3000,5600,8400,600,400,600,200,800,200,200,800,200,1000,5000,3000,6400,200,5200,200,800,2200,600,3400,1800,48 ... | 0,138200,235600,238000,247400,297800,304800,318400,331600,335400,336200,358200,360800,364000,365800,367800,392000,440800,451400, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 361600 | 158534000 | 255,212,128 | 1302 | 0,200,400,600,400,1000,200,800,200,200,400,400,800,400,200,400,400,200,1200,200,600,800,600,400,200,400,600,200,600,200,200,1200 ... | 0,361600,363000,380600,642400,656800,887800,968200,1152800,1388400,1435000,1602000,1621000,1653200,1654000,1721200,1726400,17294 ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 881400 | 158534000 | 255,48,48 | 796 | 0,1600,200,800,1000,600,1400,1200,600,600,800,2400,1000,200,1400,600,1000,200,800,1800,800,800,200,2600,400,200,1200,800,200,200 ... | 0,881400,1117600,1118000,1320000,1350600,1401200,1455000,1621800,1637600,1643200,1907600,1943600,1984600,1985000,2027400,2046200 ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 881200 | 158534000 | 255,215,0 | 1252 | 0,200,1000,400,600,200,200,400,200,600,200,1600,200,1600,600,200,200,800,800,400,1200,400,1600,200,400,1200,600,200,1000,400,140 ... | 0,881200,883000,888400,990600,1117400,1117800,1118800,1319800,1321000,1350400,1453400,1456200,1587000,1622400,1637400,1643000,16 ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 269400 | 158534000 | 255,248,250 | 1235 | 0,4400,4200,2200,2200,8400,400,600,16400,16400,18600,5600,6800,1200,15400,2200,6800,12200,15600,200,10000,2000,4600,1400,7600,18 ... | 0,269400,274200,526200,528600,670600,679200,679800,927000,974200,991200,1104000,1110600,1119200,1121800,1321600,1324600,1403800, ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 207400 | 158534000 | 224,102,255 | 1641 | 0,600,400,1000,800,600,800,1600,1800,1200,800,400,600,800,200,200,1200,400,200,1200,1400,600,1000,400,600,400,800,600,200,2800,2 ... | 0,207400,896800,926000,973400,1091400,1167000,1297800,1331400,1344200,1382200,1384400,1403200,1452600,1543600,1561400,1609800,16 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 1170000 | 158534000 | 148,0,211 | 692 | 0,1000,200,400,2000,200,600,400,1400,200,400,1200,1000,400,200,1200,600,1200,800,400,600,400,1600,800,1400,600,800,600,200,400,6 ... | 0,1170000,1296200,1351200,1397600,1401000,1402600,1417400,1426200,1435400,1633200,1659200,1711200,1840600,1916400,1956000,195780 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 361800 | 158534000 | 255,250,255 | 5578 | 0,1200,600,1400,1600,200,200,1800,3800,400,4800,600,2400,4200,2800,400,400,2800,3200,1400,1400,1600,2600,6200,200,3200,3000,600, ... | 0,361800,363400,379200,381200,642200,723000,879400,884000,888000,888800,896200,918000,943400,965400,969000,1075600,1150000,11530 ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 346800 | 158534000 | 238,44,44 | 172 | 0,400,800,400,400,1000,800,400,2400,200,2200,200,400,2000,1200,1200,1000,800,400,1200,200,600,800,400,800,600,1000,200,600,200,1 ... | 0,346800,625600,820400,2465800,2498200,2523800,2541400,2547800,2749200,3626800,3967600,6042800,6111400,9440200,9441600,9583600,9 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 211000 | 158534000 | 209,238,238 | 6515 | 0,1400,600,1400,1400,200,200,1000,2400,600,600,1000,200,200,2200,1600,7600,1600,1600,1200,3800,1000,1600,2000,1200,800,3800,2000 ... | 0,211000,213600,217400,230600,232400,234000,234600,243000,249400,262200,266200,279200,284400,286600,301000,310600,326800,333600, ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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