Schema for Chromatin State15 (expanded track) - Chromatin state calculated by ChromHMM
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Database: ARS_UCD_addY Primary Table: Liver_adult_15 Row Count: 465   Data last updated: 2021-08-12
field | example | SQL type | info |
bin | 0 | smallint(5) unsigned | range |
chrom | 1 | varchar(255) | values |
chromStart | 0 | int(10) unsigned | range |
chromEnd | 158534000 | int(10) unsigned | range |
name | 1_OpenChromatin | varchar(255) | values |
score | 0 | int(10) unsigned | range |
strand | . | char(1) | values |
thickStart | 138000 | int(10) unsigned | range |
thickEnd | 158534000 | int(10) unsigned | range |
itemRgb | 13470869 | int(10) unsigned | range |
blockCount | 3529 | int(10) unsigned | range |
blockSizes | 0,2000,400,600,400,200,400,... | longblob | |
chromStarts | 0,138000,204800,211200,2172... | longblob | |
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Sample Rows
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bin | chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | itemRgb | blockCount | blockSizes | chromStarts |
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0 | 1 | 0 | 158534000 | 1_OpenChromatin | 0 | . | 138000 | 158534000 | 205,140,149 | 3529 | 0,2000,400,600,400,200,400,400,800,400,200,200,600,200,10800,2400,6600,10000,600,800,1200,1400,600,400,400,1000,400,800,1600,400 ... | 0,138000,204800,211200,217200,218200,241800,245000,247200,266200,271400,274000,278400,287800,297800,308800,311400,318200,329600, ... |
0 | 1 | 0 | 158534000 | 2_ActiveElement | 0 | . | 919400 | 158534000 | 255,212,128 | 668 | 0,600,400,600,1000,1000,1000,200,200,600,800,2000,1400,400,1400,400,400,200,200,200,200,200,400,400,600,200,1800,200,200,200,200 ... | 0,919400,934600,968200,1151400,1232200,1398800,1401000,1456200,1532000,1540800,1568600,1587000,1689800,1697600,1701800,1729200,1 ... |
0 | 1 | 0 | 158534000 | 3_ActiveTSS | 0 | . | 881400 | 158534000 | 255,48,48 | 770 | 0,1800,600,200,1400,800,2000,800,200,2400,1400,1600,1000,1800,200,2600,1800,200,600,400,1000,1800,200,400,1600,800,2000,400,400, ... | 0,881400,990600,1009800,1117600,1398000,1454200,1643200,1876600,1907600,1943400,1984600,2027200,2046400,2127400,2127800,2217400, ... |
0 | 1 | 0 | 158534000 | 4_ActivePromoter | 0 | . | 881200 | 158534000 | 255,215,0 | 764 | 0,200,200,800,200,200,600,200,600,400,1600,600,800,200,1800,800,1200,400,400,1200,200,1200,200,800,600,200,400,400,600,400,400,6 ... | 0,881200,883200,991200,1117400,1119000,1397400,1643000,1644000,1875800,1906000,1910000,1942600,1944800,1982800,1986200,2026000,2 ... |
0 | 1 | 0 | 158534000 | 5_Inactive/WeakPoisedPromoter | 0 | . | 140000 | 158534000 | 255,248,250 | 576 | 0,5800,5600,800,3200,8600,1400,3000,6800,6200,13800,2000,2200,1600,400,200,10200,800,200,1200,2200,2000,2200,600,400,800,2800,20 ... | 0,140000,906200,1119200,1127000,1329200,1390800,1440400,1935000,1950200,1959400,2257600,2751400,2834800,3757000,3757600,3766000, ... |
0 | 1 | 0 | 158534000 | 6_PrimedEnhancer | 0 | . | 836400 | 158534000 | 224,102,255 | 3842 | 0,200,800,400,400,1200,600,1000,400,800,1400,400,200,400,1200,200,200,400,1200,200,400,600,400,200,1600,400,1600,400,600,200,240 ... | 0,836400,841000,875200,880800,883400,888400,891800,897000,898200,920000,932800,934400,935400,976000,1009000,1021600,1022800,1026 ... |
0 | 1 | 0 | 158534000 | 7_ActiveEnhancer | 0 | . | 836600 | 158534000 | 148,0,211 | 2879 | 0,1000,800,1000,800,400,1200,2600,2400,400,200,1400,4200,3200,1400,600,2600,1000,1400,1000,800,7000,2000,800,2800,1800,1200,5800 ... | 0,836600,840200,874200,897400,935000,944800,947800,955200,967000,968800,977200,979600,987400,992000,1009200,1018400,1021800,1125 ... |
0 | 1 | 0 | 158534000 | 8_WeakEnhancer | 0 | . | 837600 | 158534000 | 255,250,255 | 3405 | 0,2600,800,200,1200,1600,400,2600,1800,2000,600,3000,1600,800,2200,1000,600,2400,2600,600,1000,600,1000,200,600,800,600,3200,120 ... | 0,837600,873400,919200,933200,935800,941200,942200,946000,950400,954600,957600,965400,967400,969000,978600,983800,985000,993400, ... |
0 | 1 | 0 | 158534000 | 9_PoisedTSS/Promoter | 0 | . | 1320000 | 158534000 | 238,44,44 | 118 | 0,800,200,1000,400,600,2000,400,600,400,1000,600,800,400,800,600,400,400,1000,600,400,1200,800,200,400,400,600,400,800,400,3000, ... | 0,1320000,3079200,3079600,3081600,3627200,3628600,6042800,9440200,9441000,9442000,9445400,9869400,35122600,37110400,37117000,420 ... |
0 | 1 | 0 | 158534000 | 10_PolyCombRepressed | 0 | . | 206600 | 158534000 | 209,238,238 | 1423 | 0,3800,2800,2000,1000,8200,6200,800,1200,600,800,1200,3000,3000,1000,200,7600,7600,3800,1600,1800,2000,6400,2000,10800,1400,1620 ... | 0,206600,212800,219600,222800,224600,235000,243200,249200,262400,264600,272800,274200,284400,292000,332200,338800,350800,359800, ... |
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Note: all start coordinates in our database are 0-based, not
1-based. See explanation
here.
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Chromatin State15 (expanded track) (chromatinStateExpanded) Track Description
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Description
This track displays the predicted chromatin states across different tissues.
Display Conventions and Configuration
The colours used for each of the chromatin states are as follows
State |
DESCRIPTION |
COLOR |
COLOR CODE |
1 |
Open chromatin |
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205,140,149 |
2 |
Active element |
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255,212,128 |
3 |
Active TSS |
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255,48,48 |
4 |
Active promoter |
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255,215,0 |
5 |
Inactive/Weak Poised Promoter |
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255,248,250 |
6 |
Primed Enhancer |
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224,102,255 |
7 |
Active Enhancer |
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148,0,211 |
8 |
Weak Enhancer |
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255,250,255 |
9 |
Poised TSS/Promoter |
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238,44,44 |
10 |
PolyComb Repressed |
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209,238,238 |
11 |
Weak Repressed PolyComb |
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245,255,250 |
12 |
Poised Enhancer |
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238,210,238 |
13 |
Poised Enhancer |
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250,250,250 |
14 |
Insulator/Weak Primed Enhancer |
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119,136,153 |
15 |
Insulator |
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125,136,153 |
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