Schema for NCBI Genes - NCBI Gene Predictions for sheep(ARS-UI_Ramb_v2.0) |
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Database: ARS_UI_Ramb_v2_0 Primary Table: NCBI_Genes Data last updated: 2022-01-11
Big Bed File: /gbdb/ARS_UI_Ramb_v2_0/gene/ARS_UI_Ramb_v2_0.gene.bb
Item Count: 76,900
Format description: Genes for ARS-UI_Ramb_v2.0 with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(GCF_016772045.1) | | chromStart | 185793996 | Start position in chromosome | | chromEnd | 185903854 | End position in chromosome | | name | XM_027980271.2 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 185795689 | Start of where display should be thick (start codon) | | thickEnd | 185877604 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 10 | Number of exon | | blockSizes | 3025,159,237,96,126,111,136,137,453,228, | Comma separated list of exon sizes | | chromStarts | 0,13688,20943,23712,25046,29179,29544,83166,83512,109630, | Start positions relative to chromStart | | geneSymbol | GPR156 | Gene Symbol | | searchText | XM_027980271.2(GPR156) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 185793996 | 185903854 | XM_027980271.2 | 0 | - | 185795689 | 185877604 | 0 | 10 | 3025,159,237,96,126,111,136,137,453,228, | 0,13688,20943,23712,25046,29179,29544,83166,83512,109630, | GPR156 | XM_027980271.2(GPR156) |
| 1 | 185793996 | 185903854 | XM_042231900.1 | 0 | - | 185795689 | 185877604 | 0 | 11 | 3025,159,237,96,126,111,136,137,453,84,228, | 0,13688,20943,23712,25046,29179,29544,83166,83512,85129,109630, | GPR156 | XM_042231900.1(GPR156) |
| 1 | 185937763 | 185956791 | XM_004002953.5 | 0 | - | 185938803 | 185956704 | 0 | 4 | 1249,278,129,587, | 0,4515,6170,18441, | LRRC58 | XM_004002953.5(LRRC58) |
| 1 | 185993224 | 186050892 | XM_015092465.3 | 0 | - | 185995840 | 186050789 | 0 | 11 | 2661,77,111,113,119,131,33,130,105,57,106, | 0,8495,9610,10554,12474,15721,17130,17992,20289,57344,57562, | FSTL1 | XM_015092465.3(FSTL1) |
| 1 | 186128817 | 186139468 | XR_006056147.1 | 0 | - | 186139468 | 186139468 | 0 | 3 | 195,211,813, | 0,3992,9838, | LOC114118893 | XR_006056147.1(LOC114118893) |
| 1 | 186171463 | 186177442 | XM_004002954.5 | 0 | + | 186171491 | 186177386 | 0 | 3 | 208,147,119, | 0,4333,5860, | NDUFB4 | XM_004002954.5(NDUFB4) |
| 1 | 186189952 | 186233080 | XM_004002955.5 | 0 | - | 186190152 | 186233003 | 0 | 14 | 350,182,127,105,125,100,80,35,92,60,106,89,72,92, | 0,3071,9454,11885,13152,15519,16171,17095,18552,20295,32322,36480,37356,43036, | HGD | XM_004002955.5(HGD) |
| 1 | 186240680 | 186278424 | XM_004002956.5 | 0 | - | 186241905 | 186278418 | 0 | 8 | 1291,39,72,151,115,130,92,52, | 0,1887,5173,9562,12067,16631,31377,37692, | RABL3 | XM_004002956.5(RABL3) |
| 1 | 186247241 | 186247313 | TRNAC-ACA | 0 | + | 186247313 | 186247313 | 0 | 1 | 72, | 0, | TRNAC-ACA | TRNAC-ACA(TRNAC-ACA) |
| 1 | 186278633 | 186313670 | XM_027980303.2 | 0 | + | 186278865 | 186312383 | 0 | 5 | 246,461,202,242,1712, | 0,4643,22422,28453,33325, | GTF2E1 | XM_027980303.2(GTF2E1) |
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