Schema for Indels (928) - Indels for 928 chicken samples

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Schema for Indels (928) - Indels for 928 chicken samples

Database: GRCg6a Primary Table: Indels Data last updated: 2021-10-20
Big Bed File: /gbdb/GRCg6a/SNP_indel/Chicken_Indel.bb
Item Count: 2,828,789
Format description: Indels for GRCg6a

field	example	description
`chrom`	1	Reference sequence chromosome or scaffold
`chromStart`	131739869	Start position in chromosome
`chromEnd`	131739870	End position in chromosome
`name`	1:131739870	SNP postion and dbSNP rsid
`allele`	GC/G	Allele
`MAF`	0.001	Minor allele frequency
`GRCg7b_Pos`	1:130546671	GRCg7b position
`dbSNP_rsid`	novel	dbSNP rsid

Sample Rows

chrom	chromStart	chromEnd	name	allele	MAF	GRCg7b_Pos	dbSNP_rsid
1	131739869	131739870	1:131739870	GC/G	0.001	1:130546671	novel
1	131739967	131739968	1:131739968	G/GC	0.454	1:130546769	novel
1	131740328	131740329	1:131740329	CTGGCTGAAAAATATAT/C	0.474	1:130547131	rs733557388
1	131740670	131740671	1:131740671	CT/C	0.001	1:130547475	novel
1	131741039	131741040	1:131741040	TA/T	0.001	1:130547844	novel
1	131741043	131741044	1:131741044	AGAGCT/A	0.001	1:130547848	novel
1	131741104	131741105	1:131741105	GT/G	0.002	1:130547909	novel
1	131742165	131742166	1:131742166	CTCT/C	0.001	1:130548990	novel
1	131742219	131742220	1:131742220	T/TAGGAC	0.013	1:130549044	novel
1	131742456	131742457	1:131742457	AAGCAG/A	0.001	1:130549281	novel