Schema for Sheep NCBI Genes - NCBI Gene Predictions for cross-species sheep (Oar_v4.0) |
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Database: Goat Primary Table: Sheep_NCBI_Genes Data last updated: 2018-01-02
Big Bed File: /gbdb/Goat/gene/cross_species/NCBI/sheep/Oar_v4.0.gene.bb
Item Count: 38,125
Format description: Cross-species annotation for Goat_new using alignments and liftOver
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(Oar_v4.0:GCA_000298735.2) | | chromStart | 105425700 | Start position in chromosome | | chromEnd | 105454112 | End position in chromosome | | name | XM_004003197.3 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 105425932 | Start of where display should be thick (start codon) | | thickEnd | 105440495 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 5 | Number of exon | | blockSizes | 1131,72,90,369,139, | Comma separated list of exon sizes | | chromStarts | 0,2386,5756,14434,28273, | Start positions relative to chromStart | | geneSymbol | OTOL1 | Gene Symbol | | searchText | XM_004003197.3(OTOL1) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 105425700 | 105454112 | XM_004003197.3 | 0 | - | 105425932 | 105440495 | 0 | 5 | 1131,72,90,369,139, | 0,2386,5756,14434,28273, | OTOL1 | XM_004003197.3(OTOL1) |
| 1 | 105425700 | 105460640 | XM_012100201.2 | 0 | - | 105425932 | 105440495 | 0 | 5 | 1131,72,90,369,144, | 0,2386,5756,14434,34796, | OTOL1 | XM_012100201.2(OTOL1) |
| 1 | 105587354 | 105618234 | XM_012100182.1 | 0 | + | 105613480 | 105615816 | 0 | 4 | 530,94,141,2681, | 0,11514,26037,28199, | SPTSSB | XM_012100182.1(SPTSSB) |
| 1 | 105587357 | 105618234 | XM_004003198.2 | 0 | + | 105615585 | 105615816 | 0 | 3 | 527,94,2681, | 0,11511,28196, | SPTSSB | XM_004003198.2(SPTSSB) |
| 1 | 105708669 | 105742990 | XM_004003199.3 | 0 | - | 105709939 | 105742265 | 0 | 16 | 1401,71,107,73,113,146,118,97,79,91,129,81,97,135,56,150, | 0,1838,3174,4630,5476,11219,12275,14540,15313,23432,23949,24807,30278,32335,33552,34171, | NMD3 | XM_004003199.3(NMD3) |
| 1 | 105868159 | 105874281 | XR_001022834.2 | 0 | - | 105868159 | 105868159 | 0 | 3 | 944,111,64, | 0,4351,6058, | LOC105603578 | XR_001022834.2(LOC105603578) |
| 1 | 105943028 | 106272609 | XM_004003202.2 | 0 | - | 105948228 | 106272500 | 0 | 4 | 5547,162,175,508, | 0,9092,98713,329073, | PPM1L | XM_004003202.2(PPM1L) |
| 1 | 106102781 | 106102852 | rna4459 | 0 | + | 106102781 | 106102781 | 0 | 1 | 71, | 0, | TRNAC-GCA | rna4459(TRNAC-GCA) |
| 1 | 106273192 | 106275045 | XR_001022879.1 | 0 | + | 106273192 | 106273192 | 0 | 2 | 653,1007, | 0,846, | LOC105603633 | XR_001022879.1(LOC105603633) |
| 1 | 106357875 | 106360863 | XM_012100407.2 | 0 | - | 106359939 | 106360518 | 0 | 1 | 2988, | 0, | ARL14 | XM_012100407.2(ARL14) |
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