Schema for hg38 UCSC Genes - UCSC Gene Predictions for cross-species human (hg38) |
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Database: Goat Primary Table: hg38_UCSC_Genes Data last updated: 2018-04-13
Big Bed File: /gbdb/Goat/gene/cross_species/UCSC/hg38/hg38_gene.bb
Item Count: 55,161
Format description: Cross-species annotation for Goat_new using alignments and liftOver
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(GRCh38, GCA_000001405.15) | | chromStart | 105425932 | Start position in chromosome | | chromEnd | 105440495 | End position in chromosome | | name | NM_001080440.1 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 105425932 | Start of where display should be thick (start codon) | | thickEnd | 105440495 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 4 | Number of exon | | blockSizes | 899,72,90,361, | Comma separated list of exon sizes | | chromStarts | 0,2154,5524,14202, | Start positions relative to chromStart | | geneSymbol | OTOL1 | Gene Symbol | | searchText | NM_001080440.1(OTOL1) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 105425932 | 105440495 | NM_001080440.1 | 0 | - | 105425932 | 105440495 | 0 | 4 | 899,72,90,361, | 0,2154,5524,14202, | OTOL1 | NM_001080440.1(OTOL1) |
| 1 | 105710507 | 105741139 | XR_001740166.1 | 0 | - | 105741139 | 105741139 | 0 | 12 | 71,107,73,146,118,97,79,91,129,81,97,135, | 0,1336,2792,9381,10437,12702,13475,21594,22111,22969,28440,30497, | NMD3 | XR_001740166.1(NMD3) |
| 1 | 105710507 | 105741139 | XR_001740167.1 | 0 | - | 105741139 | 105741139 | 0 | 12 | 71,107,73,146,118,97,79,91,129,81,97,135, | 0,1336,2792,9381,10437,12702,13475,21594,22111,22969,28440,30497, | NMD3 | XR_001740167.1(NMD3) |
| 1 | 106451158 | 106509291 | NM_002268.4 | 0 | + | 106451459 | 106509291 | 0 | 16 | 370,45,90,30,53,96,86,87,170,45,131,129,105,72,163,95, | 0,30353,31239,31432,31559,34701,35311,36900,38531,38810,41541,45084,47987,50750,55170,58038, | KPNA4 | NM_002268.4(KPNA4) |
| 1 | 106496589 | 106496922 | NR_003001.1 | 0 | + | 106496922 | 106496922 | 0 | 1 | 333, | 0, | SCARNA7 | NR_003001.1(SCARNA7) |
| 1 | 106607553 | 106607634 | NR_029525.1 | 0 | - | 106607634 | 106607634 | 0 | 1 | 81, | 0, | MIR16-2 | NR_029525.1(MIR16-2) |
| 1 | 106607691 | 106607789 | NR_029663.1 | 0 | - | 106607789 | 106607789 | 0 | 1 | 98, | 0, | MIR15B | NR_029663.1(MIR15B) |
| 1 | 106625313 | 106731460 | NM_020800.2 | 0 | + | 106625361 | 106731460 | 0 | 18 | 85,222,111,69,110,90,138,180,119,75,164,65,136,148,172,90,173,124, | 0,2534,13675,15497,25165,29327,31209,58220,66048,68973,75618,81060,82764,83302,84552,89044,89227,106023, | IFT80 | NM_020800.2(IFT80) |
| 1 | 106627853 | 106731460 | NM_001190241.1 | 0 | + | 106640851 | 106731460 | 0 | 17 | 216,111,69,110,90,138,180,119,75,164,65,136,148,172,90,173,124, | 0,11135,12957,22625,26787,28669,55680,63508,66433,73078,78520,80224,80762,82012,86504,86687,103483, | IFT80 | NM_001190241.1(IFT80) |
| 1 | 106627853 | 106731460 | NM_001190242.1 | 0 | + | 106640851 | 106731460 | 0 | 17 | 216,111,69,110,90,138,180,119,75,164,65,136,148,172,90,173,124, | 0,11135,12957,22625,26787,28669,55680,63508,66433,73078,78520,80224,80762,82012,86504,86687,103483, | IFT80 | NM_001190242.1(IFT80) |
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