Schema for Sheep NCBI Genes - NCBI Gene Predictions for Sheep |
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Database: Oar_rambouillet_v1_0_addY Primary Table: Sheep_NCBI_Genes Data last updated: 2021-06-11
Big Bed File: /gbdb/Oar_rambouillet_v1_0_addY/gene/Oar_rambouillet_v1_0_addY.gene.bb
Item Count: 57,350
Format description: Genes for sheep with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(Oar_rambouillet_v1 + HuSheep_chrY) | | chromStart | 201131911 | Start position in chromosome | | chromEnd | 201132539 | End position in chromosome | | name | XM_004008154.3 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | + | + or - for strand | | thickStart | 201131932 | Start of where display should be thick (start codon) | | thickEnd | 201132511 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 628, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneSymbol | LOC101120489 | Gene Symbol | | searchText | XM_004008154.3(LOC101120489) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 201131911 | 201132539 | XM_004008154.3 | 0 | + | 201131932 | 201132511 | 0 | 1 | 628, | 0, | LOC101120489 | XM_004008154.3(LOC101120489) |
| 1 | 201581795 | 201581867 | TRNAS-GGA-11 | 0 | - | 201581867 | 201581867 | 0 | 1 | 72, | 0, | TRNAS-GGA | TRNAS-GGA-11(TRNAS-GGA) |
| 1 | 201789193 | 201809469 | XM_015092456.2 | 0 | - | 201789973 | 201809330 | 0 | 6 | 1240,151,123,156,208,178, | 0,2717,3901,14970,18518,20098, | IGSF11 | XM_015092456.2(IGSF11) |
| 1 | 201789193 | 201809469 | XM_015092457.2 | 0 | - | 201789973 | 201809330 | 0 | 6 | 1240,67,123,156,208,178, | 0,2717,3901,14970,18518,20098, | IGSF11 | XM_015092457.2(IGSF11) |
| 1 | 201984450 | 202026567 | XM_027962599.1 | 0 | + | 201984450 | 202026567 | 0 | 4 | 1113,147,63,147, | 0,1836,7968,41970, | TEX55 | XM_027962599.1(TEX55) |
| 1 | 202012384 | 202043556 | XM_012094983.3 | 0 | + | 202026819 | 202042692 | 0 | 8 | 90,88,201,75,123,180,84,915, | 0,14416,15760,18255,19008,21723,28700,30257, | UPK1B | XM_012094983.3(UPK1B) |
| 1 | 202045826 | 202047482 | LOC101117816 | 0 | + | 202047482 | 202047482 | 0 | 1 | 1656, | 0, | LOC101117816 | LOC101117816(LOC101117816) |
| 1 | 202053941 | 202081673 | XM_027980219.1 | 0 | - | 202054733 | 202070925 | 0 | 7 | 925,105,123,188,233,392,85, | 0,2205,4730,10713,13182,16731,27647, | B4GALT4 | XM_027980219.1(B4GALT4) |
| 1 | 202053941 | 202081675 | XM_027980218.1 | 0 | - | 202054733 | 202070925 | 0 | 8 | 925,105,123,188,233,392,69,87, | 0,2205,4730,10713,13182,16731,25864,27647, | B4GALT4 | XM_027980218.1(B4GALT4) |
| 1 | 202113613 | 202235367 | XM_004002941.4 | 0 | + | 202113867 | 202230688 | 0 | 12 | 354,103,145,83,108,143,199,125,63,576,281,7106, | 0,70112,72667,80998,82242,83032,87704,92160,102205,104929,112086,114648, | ARHGAP31 | XM_004002941.4(ARHGAP31) |
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