Schema for Zebu NCBI Genes - NCBI Gene Predictions for zebu(UOA_Brahman_1) |
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Database: UOA_Brahman_1 Primary Table: Zebu_NCBI_Genes Data last updated: 2021-06-11
Big Bed File: /gbdb/UOA_Brahman_1/gene/UOA_Brahman_1.gene.bb
Item Count: 68,333
Format description: Genes for Zebu with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold(UOA_Brahman_1: GCF_003369695.1) | | chromStart | 104743861 | Start position in chromosome | | chromEnd | 104744422 | End position in chromosome | | name | LOC113899078 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | + | + or - for strand | | thickStart | 104744422 | Start of where display should be thick (start codon) | | thickEnd | 104744422 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 2 | Number of exon | | blockSizes | 193,278, | Comma separated list of exon sizes | | chromStarts | 0,283, | Start positions relative to chromStart | | geneSymbol | LOC113899078 | Gene Symbol | | searchText | LOC113899078(LOC113899078) | Search Text |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol | searchText |
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| 1 | 104743861 | 104744422 | LOC113899078 | 0 | + | 104744422 | 104744422 | 0 | 2 | 193,278, | 0,283, | LOC113899078 | LOC113899078(LOC113899078) |
| 1 | 104985085 | 104985183 | LOC113899364 | 0 | + | 104985183 | 104985183 | 0 | 1 | 98, | 0, | LOC113899364 | LOC113899364(LOC113899364) |
| 1 | 105210990 | 105211062 | TRNAW-CCA-2 | 0 | - | 105211062 | 105211062 | 0 | 1 | 72, | 0, | TRNAW-CCA | TRNAW-CCA-2(TRNAW-CCA) |
| 1 | 105308843 | 105320537 | XM_027552370.1 | 0 | - | 105309056 | 105320535 | 0 | 4 | 1112,72,90,363, | 0,2303,5338,11331, | OTOL1 | XM_027552370.1(OTOL1) |
| 1 | 105458700 | 105489758 | XR_003511141.1 | 0 | + | 105489758 | 105489758 | 0 | 4 | 1118,864,94,1564, | 0,1386,13282,29494, | SPTSSB | XR_003511141.1(SPTSSB) |
| 1 | 105458708 | 105489758 | XM_027542168.1 | 0 | + | 105488226 | 105488457 | 0 | 5 | 768,864,94,64,1564, | 0,1378,13274,22799,29486, | SPTSSB | XM_027542168.1(SPTSSB) |
| 1 | 105458708 | 105489758 | XM_027542177.1 | 0 | + | 105488226 | 105488457 | 0 | 4 | 768,864,94,1564, | 0,1378,13274,29486, | SPTSSB | XM_027542177.1(SPTSSB) |
| 1 | 105496992 | 105499070 | LOC113898004 | 0 | + | 105499070 | 105499070 | 0 | 3 | 5,195,324, | 0,1116,1754, | LOC113898004 | LOC113898004(LOC113898004) |
| 1 | 105576453 | 105579996 | LOC113898020 | 0 | + | 105579996 | 105579996 | 0 | 2 | 1632,56, | 0,3487, | LOC113898020 | LOC113898020(LOC113898020) |
| 1 | 105582611 | 105619271 | XM_027542193.1 | 0 | - | 105583881 | 105618578 | 0 | 16 | 1401,71,107,73,113,146,118,97,79,91,129,81,97,135,56,119, | 0,1840,3198,4660,5508,11599,12654,17003,17784,25227,25732,27088,32603,34693,35923,36541, | NMD3 | XM_027542193.1(NMD3) |
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