Schema for expreBar - expreBar |
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Database: UOA_Brahman_1 Primary Table: expreBar Data last updated: 2021-06-14
Big Bed File: /gbdb/UOA_Brahman_1/trans/bigBarChart/zebu/output.bigBed
Item Count: 31,850
Format description: Tissue expreBar
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 104743862 | Start position of feature on chromosome | | chromEnd | 104744422 | End position of feature on chromosome | | name | LOC113899078 | Name of transcript | | score | 111 | Score | | strand | . | + or - for strand | | name2 | LOC113899078 | Name of gene | | expCount | 19 | Number of tissues | | expScores | 0.0,0.0,0.14,0.11,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.0 | Comma separated list of median expression in FPKM for each tissue. | | _dataOffset | 11917559 | Offset of sample data in data matrix file | | _dataLen | 653 | Length of sample data row in data matrix file |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
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| 1 | 104743862 | 104744422 | LOC113899078 | 111 | . | LOC113899078 | 19 | 0.0,0.0,0.14,0.11,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.0 | 11917559 | 653 |
| 1 | 104985086 | 104985183 | LOC113899364 | 0 | . | LOC113899364 | 19 | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 | 12015184 | 653 |
| 1 | 105210991 | 105211062 | TRNAW-CCA.20 | 0 | . | TRNAW-CCA | 19 | 0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0,0.0 | 20363504 | 653 |
| 1 | 105308844 | 105320537 | OTOL1 | 222 | . | OTOL1 | 19 | 0.04,0.70,0.07,0.88,0.04,0.05,0.01,0.0,0.0,0.00,0.00,0.00,0.07,0.00,0.00,0.0,0.00,0.0,0.32 | 15822042 | 646 |
| 1 | 105458701 | 105489758 | SPTSSB | 555 | . | SPTSSB | 19 | 0.47,7.12,0.12,0.11,0.1,0.07,1.54,1.35,1.08,0.0,0.00,0.08,0.27,11.44,0.11,0.0,14.04,1.89,1.41 | 18373289 | 664 |
| 1 | 105496993 | 105499070 | LOC113898004 | 111 | . | LOC113898004 | 19 | 0.00,0.11,0.0,0.11,0.0,0.0,0.0,0.0,0.0,0.0,0.02,0.0,0.0,0.0,0.04,0.0,0.0,0.0,0.0 | 11561380 | 653 |
| 1 | 105576454 | 105579996 | LOC113898020 | 333 | . | LOC113898020 | 19 | 1.43,0.73,0.63,0.76,0.18,0.18,0.28,0.34,0.21,0.13,0.08,0.27,0.34,0.45,0.73,0.02,0.08,0.75,0.06 | 11563992 | 653 |
| 1 | 105582612 | 105619271 | NMD3 | 888 | . | NMD3 | 19 | 14.33,14.94,6.03,12.84,13.40,14.05,11.75,13.82,12.42,1.49,2.42,5.93,12.65,14.94,17.68,7.64,6.93,6.59,8.62 | 15515623 | 725 |
| 1 | 105778655 | 105811981 | B3GALNT1 | 555 | . | B3GALNT1 | 19 | 4.62,5.63,2.41,0.27,2.64,2.19,4.05,1.89,1.90,0.17,0.02,0.32,4.66,4.50,0.20,0.0,0.06,0.00,6.12 | 846970 | 649 |
| 1 | 105832370 | 106160617 | PPM1L | 555 | . | PPM1L | 19 | 6.04,6.42,2.56,1.79,0.37,0.32,1.32,3.01,2.23,0.06,0.24,0.16,1.76,2.49,0.65,0.3,1.86,2.57,1.08 | 16486529 | 647 |
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