Schema for NCBI Genes - NCBI Gene Predictions |
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Database: panGoat Primary Table: gene Data last updated: 2019-10-20
Big Bed File: /gbdb/panGoat/gene/goat.bb
Item Count: 53,441
Format description: Genes for goat_new with Transcript and GeneSymbol
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 105334761 | Start position in chromosome | | chromEnd | 105334833 | End position in chromosome | | name | rna1156 | Name of transcript | | score | 0 | Score from 0-1000 | | strand | - | + or - for strand | | thickStart | 105334833 | Start of where display should be thick (start codon) | | thickEnd | 105334833 | End of where display should be thick (stop codon) | | reserved | 0 | Used as itemRgb as of 2004-11-22 | | blockCount | 1 | Number of exon | | blockSizes | 72, | Comma separated list of exon sizes | | chromStarts | 0, | Start positions relative to chromStart | | geneSymbol | TRNAW-CCA | Gene Symbol |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | thickStart | thickEnd | reserved | blockCount | blockSizes | chromStarts | geneSymbol |
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| 1 | 105334761 | 105334833 | rna1156 | 0 | - | 105334833 | 105334833 | 0 | 1 | 72, | 0, | TRNAW-CCA |
| 1 | 105425816 | 105440497 | XM_018053789.1 | 0 | - | 105425932 | 105440495 | 0 | 4 | 1015,72,90,363, | 0,2270,5640,14318, | OTOL1 |
| 1 | 105473250 | 105477959 | XR_001918618.1 | 0 | + | 105477959 | 105477959 | 0 | 3 | 167,138,84, | 0,691,4625, | LOC108636899 |
| 1 | 105586363 | 105616555 | XM_018048163.1 | 0 | + | 105613480 | 105615816 | 0 | 5 | 85,861,94,141,1002, | 0,660,12505,27028,29190, | SPTSSB |
| 1 | 105587378 | 105617122 | XM_005675373.3 | 0 | + | 105615585 | 105615816 | 0 | 3 | 506,94,1569, | 0,11490,28175, | SPTSSB |
| 1 | 105621362 | 105627177 | gene649 | 0 | + | 105627177 | 105627177 | 0 | 3 | 100,196,343, | 0,4840,5472, | LOC102179886 |
| 1 | 105708655 | 105742967 | XM_005675374.3 | 0 | - | 105709939 | 105742265 | 0 | 16 | 1415,71,107,73,113,146,118,97,79,91,129,81,97,135,56,127, | 0,1852,3188,4644,5490,11233,12289,14554,15327,23446,23963,24821,30292,32349,33566,34185, | NMD3 |
| 1 | 105817243 | 105818057 | XR_001918619.1 | 0 | + | 105818057 | 105818057 | 0 | 1 | 814, | 0, | LOC108636901 |
| 1 | 105835723 | 105837446 | gene652 | 0 | - | 105837446 | 105837446 | 0 | 1 | 1723, | 0, | LOC102171924 |
| 1 | 105847447 | 105851563 | gene653 | 0 | - | 105851563 | 105851563 | 0 | 3 | 891,549,22, | 0,2446,4094, | LOC108636362 |
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