Schema for expreBar - expreBar |
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Database: panGoat Primary Table: expreBar Data last updated: 2019-10-20
Big Bed File: /gbdb/panGoat/trans/wholeGenome/output.bigBed
Item Count: 27,142
Format description: Tissue expreBar
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 105425817 | Start position of feature on chromosome | | chromEnd | 105440497 | End position of feature on chromosome | | name | OTOL1 | Name of transcript | | score | 111 | Score | | strand | - | + or - for strand | | name2 | OTOL1 | Name of gene | | expCount | 21 | Number of tissues | | expScores | 0.13,0.0,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.00,0.0,0.16,0.04,0.0,0.0,0.0,0.0,0.0,0.01,0.0,0.0 | Comma separated list of median expression in RPKM for each tissue. | | _dataOffset | 464671 | Offset of sample data in data matrix file | | _dataLen | 682 | Length of sample data row in data matrix file |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
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| 1 | 105425817 | 105440497 | OTOL1 | 111 | - | OTOL1 | 21 | 0.13,0.0,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.00,0.0,0.16,0.04,0.0,0.0,0.0,0.0,0.0,0.01,0.0,0.0 | 464671 | 682 |
| 1 | 105473251 | 105477959 | LOC108636899 | 333 | + | LOC108636899 | 21 | 0.28,0.0,0.0,0.0,0.0,0.0,0.0,0.0,4.11,0.00,0.17,0.0,0.03,0.0,0.0,0.0,0.23,0.0,0.03,0.0,0.0 | 465353 | 689 |
| 1 | 105586364 | 105617122 | SPTSSB | 666 | + | SPTSSB | 21 | 27.24,0.11,3.29,2.88,2.44,0.08,0.0,0.0,23.34,7.67,0.11,0.61,0.17,0.44,1.02,0.52,0.23,18.54,10.70,0.01,3.24 | 466042 | 703 |
| 1 | 105621363 | 105627177 | LOC102179886 | 111 | + | LOC102179886 | 21 | 0.03,0.0,0.0,0.0,0.00,0.0,0.16,0.0,0.00,0.00,0.0,0.0,0.00,0.0,0.0,0.0,0.0,0.00,0.08,0.0,0.0 | 466745 | 689 |
| 1 | 105708656 | 105742967 | NMD3 | 888 | - | NMD3 | 21 | 4.97,15.23,7.88,10.22,16.71,17.83,15.02,12.11,4.07,8.92,2.61,6.6,15.42,12.27,20.71,11.52,6.01,10.26,10.20,6.87,13.94 | 468117 | 751 |
| 1 | 105817244 | 105818057 | LOC108636901 | 111 | + | LOC108636901 | 21 | 0.0,0.0,0.02,0.0,0.00,0.03,0.02,0.0,0.0,0.0,0.0,0.0,0.0,0.27,0.0,0.02,0.0,0.0,0.01,0.0,0.0 | 468868 | 689 |
| 1 | 105835724 | 105837446 | LOC102171924 | 111 | - | LOC102171924 | 21 | 0.03,0.0,0.01,0.0,0.00,0.01,0.0,0.0,0.0,0.01,0.0,0.15,0.0,0.0,0.0,0.00,0.01,0.00,0.02,0.00,0.1 | 469557 | 689 |
| 1 | 105847448 | 105851563 | LOC108636362 | 111 | - | LOC108636362 | 21 | 0.01,0.0,0.02,0.0,0.00,0.00,0.0,0.0,0.0,0.00,0.03,0.0,0.00,0.0,0.0,0.0,0.0,0.0,0.00,0.0,0.0 | 470246 | 689 |
| 1 | 105889211 | 105922236 | B3GALNT1 | 555 | + | B3GALNT1 | 21 | 0.31,2.8,2.45,1.96,2.22,7.95,2.11,1.47,0.67,1.14,0.89,0.19,0.05,2.15,0.06,1.62,0.75,0.49,0.74,0.55,2.07 | 470935 | 688 |
| 1 | 105943029 | 106273274 | PPM1L | 555 | - | PPM1L | 21 | 0.78,1.19,0.72,3.28,2.04,1.45,0.98,7.96,0.83,0.41,0.55,1.69,0.75,2.96,1.48,8.41,0.71,0.51,1.39,0.27,0.6 | 471623 | 684 |
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