Schema for cnvBar - Haploid Copy Number |
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Database: panGoat Primary Table: cnvBar Data last updated: 2019-10-20
Big Bed File: /gbdb/panGoat/CNV/output.bigBed
Item Count: 63,193
Format description: Tissue cnvBar
| field | example | description |
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| chrom | 1 | Reference sequence chromosome or scaffold | | chromStart | 104982800 | Start position of feature on chromosome | | chromEnd | 104986000 | End position of feature on chromosome | | name | CNV2266 | Name of transcript | | score | 0 | Score | | strand | + | + or - for strand | | name2 | CNV2266 | Name of gene | | expCount | 5 | Number of tissues | | expScores | 0.89,0.78,0.79,0.68,0.87 | Comma separated list of median Haploid Copy Number for each individual. | | _dataOffset | 1513108 | Offset of sample data in data matrix file | | _dataLen | 668 | Length of sample data row in data matrix file |
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Sample Rows
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| chrom | chromStart | chromEnd | name | score | strand | name2 | expCount | expScores | _dataOffset | _dataLen |
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| 1 | 104982800 | 104986000 | CNV2266 | 0 | + | CNV2266 | 5 | 0.89,0.78,0.79,0.68,0.87 | 1513108 | 668 |
| 1 | 105014800 | 105016400 | CNV2267 | 111 | + | CNV2267 | 5 | 0.91,1.04,0.97,0.86,0.94 | 1513776 | 668 |
| 1 | 105036400 | 105038400 | CNV2268 | 444 | + | CNV2268 | 5 | 1.07,0.99,1.08,1.12,1.06 | 1514444 | 668 |
| 1 | 105093200 | 105095200 | CNV2269 | 111 | + | CNV2269 | 5 | 1.02,0.95,0.96,0.85,0.9 | 1515112 | 668 |
| 1 | 105100400 | 105102000 | CNV2270 | 555 | + | CNV2270 | 5 | 1.07,1.00,1.08,1.18,1.09 | 1515780 | 668 |
| 1 | 105120000 | 105121600 | CNV2271 | 999 | + | CNV2271 | 5 | 1.25,1.25,1.39,1.24,1.3 | 1516448 | 668 |
| 1 | 105205200 | 105207200 | CNV2272 | 222 | + | CNV2272 | 5 | 1.05,1.01,1.04,0.89,1.01 | 1517116 | 668 |
| 1 | 105284400 | 105286000 | CNV2273 | 666 | + | CNV2273 | 5 | 1.08,1.07,1.12,1.1,1.07 | 1517784 | 668 |
| 1 | 105368800 | 105370400 | CNV2274 | 111 | + | CNV2274 | 5 | 0.99,1.0,0.94,0.61,0.97 | 1518452 | 668 |
| 1 | 105403600 | 105405200 | CNV2275 | 222 | + | CNV2275 | 5 | 1.01,0.93,1.03,1.0,1.03 | 1519120 | 668 |
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