1. snps, indels files

pig.indel.anno.final  (692M) pig.indel.anno.tab.gz  (534M) pig.snp.anno.final  (4.4G) pig.snp.anno.tab.gz  (3.0G)

2. PSVRP

PSVRP.vcf.gz  (147M)

We constructed the Pig Structural Variant Reference Panel (PSVRP) by integrating 21 long-read and 1,193 short-read whole-genome resequencing datasets from globally diverse pig populations. A total of 319,058 high-confidence SVs were identified, including 196,621 insertions and 122,438 deletions The PSVRP provides a high-resolution, population-scale pig SVs genotyping resource that combines the accuracy of short reads with the sensitivity of long reads. This work deepens our understanding of genetic variation and offers new insights for precision pig breeding.