PANPIG

Welcome to Pig Pan-genome Database

Sus scrofa (i.e., pig or swine) is of enormous agricultural importance and an attractive model for biomedical research and applications. Pig pan-genome is composed of 2.4 Gb Duroc genome (Sscrofa11.1) which was assembled by the third-generation sequencing technology and 72.5 Mb pan-sequences from 11 important European and Chinese local pig varieties. The pan-genome provides a rich data set for scientific community, which would promote the development of pig genome.

News

release Asianwildboar.genomic.fa.gz (626M)

release Asianwildboar.genomic.gtf.gz (29M)

release T2T_Bamei.fa.gz (670M)

release T2T_Bamei.genomic.gtf.gz (23M)

release T2T_Sscrofa.fa.gz (673M)

release T2T_Sscrofa.genomic.gtf.gz (26M)

release WildboarVeluwe.fa.gz (677M)

release WildboarVeluwe.genomic.gtf.gz (26M)


For publication of results please cite the following article:

Dong Li, Yulong Wang, Tiantian Yuan, Minghao Cao, et al 2024. Pangenome and genome variations analyses of pigs unveil genomic facets for their adaptation and agronomic characteristics. iMeta 3: e257.

Tian X, Li R, Fu W, et al. Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data[J]. Science China. Life sciences, 2020, 63(5):750-763.