PANPIG

Welcome to Pig Pan-genome Database

Sus scrofa (i.e., pig or swine) is of enormous agricultural importance and an attractive model for biomedical research and applications. Pig pan-genome is composed of 2.4 Gb Duroc genome (Sscrofa11.1) which was assembled by the third-generation sequencing technology and 72.5 Mb pan-sequences from 11 important European and Chinese local pig varieties. The pan-genome provides a rich data set for scientific community, which would promote the development of pig genome.

News

release Minigraph_Cactus_Pangenie_Sur.vcf.gz (98M)

release pig18chr.full.gfa.gz (6.9G)

release pig18chr.vcf.gz (2.1G)

release Bamei.gtf (486M)

release Hanjiangblack.gtf (382M)

release Juema.gtf (498M)

release Largewhite.gtf (401M)

release pan-sequences.location.gz (291M)


For publication of results please cite the following article:

Dong Li, Yulong Wang, Tiantian Yuan, Minghao Cao, et al 2024. Pangenome and genome variations analysis of pigs unveil genomic facets for its adaptation and agronomic characteristics. iMeta 3: e256.

Tian X, Li R, Fu W, et al. Building a sequence map of the pig pan-genome from multiple de novo assemblies and Hi-C data[J]. Science China. Life sciences, 2020, 63(5):750-763.