Batch Download

Users can download data sets of pig pangenome gfa file, pangenome vcf file, Pangenie structural variation vcf file, and pangenome sequence file from Minigraph-Cactus. The genome annotation of Bamei, Juema, Hanjiang Black, and Large White are also provided. Please choose your desired files to download in following.

Genome version	pangenome sequence file from Minigraph-Cactus	pangenome gfa file	Pangenie structural variation vcf file	Bamei genome annotation	Juema genome annotation	Hanjiang Black genome annotation	Large White genome annotation	Pan-sequences location
Graph_panPig	Minigraph_Cactus_Pangenie_Sur.vcf.gz (98M)	pig18chr.full.gfa.gz (6.9G)	pig18chr.vcf.gz (2.1G)	Bamei.gtf.gz (42M)	Hanjiangblack.gtf.gz (34M)	Juema.gtf.gz (43M)	LargeWhite.gtf.gz (35M)	pan-sequences.27genome.fa.gz (82M)

Users can download data sets of panPig_v1 assembly, pan-sequences annotation, copy number variation regions (CNVR), gene expression and chromosome localization of pan-sequences. Please choose your desired files to download in following table.

Genome version	Pan-genome reference	Pan-sequences set	Male-specific sequences set	Pan-sequences annotation	Copy number variations	Gene expression	Pan-sequences location
panPig_v1	panPig_v1.dna.tar.gz (783M)	pan-sequences.fa.gz (21M)	Male-specific.fq.gz (3.0M)	pan-sequences.gff.tar.gz (948K)	panPig.CNVR.gz (6.0M)	panPig.trans.gz (4.4M)	pan-sequences.location.gz (596K)