Multiz alignments of 78 ruminants and 32 outgroup species
 

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Alignment block 1 of 179 in window, 6278864 - 6285491, 6628 bps 
B D     ARS_UCD_addY  agattcactggtgtggcaagttgtctctcagactgggcaggcattaacgtttggcttggcgttactcaaa
     TibetanAntelope  agattcactggtgtggcaagttgtctctcagactgggcaggcattaacgtttggcttggcgttactcaaa

        ARS_UCD_addY  agcaaaagaaaagtaaaaggaagaagtaagaacaagggaaaagattgtattgattttaaaaccatgcaaa
     TibetanAntelope  agcaaaagaaaagtaaaaggaagaagtaagaacaaggaaaaagattgtattgattttaaaaccatgcaaa

        ARS_UCD_addY  aactgcaaatctctgtttatatttacctatttatgctgattgttgctggcccagtggatctgaatgagaa
     TibetanAntelope  aactgcaaatctttgtttatatttacctatttatgctgcttgttgctggcccagtggatctgaatgagaa

        ARS_UCD_addY  cagcgagcagaaggaaaatgtggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactaca
     TibetanAntelope  cagcgagcagaaggaaaatgtggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaa

        ARS_UCD_addY  tcctcaagactagaagccataaaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatca
     TibetanAntelope  tcctcaagactagaagccataaaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatca

        ARS_UCD_addY  gcaaagatgctatcagacaacttttgcccaaggctcctccactcctggaactgattgatcagttcgatgt
     TibetanAntelope  gcaaagatgctataagacaacttttgcccaaggctcctccactccgggaactgattgatcagtacgatgt

        ARS_UCD_addY  ccagagagatgccagcagtgacggctccttggaagacgatgactaccacgccaggacggaaacggtcatt
     TibetanAntelope  ccagagagatgacagcagcgacggctccttggaagacgatgactaccacgttacgacggaaacggtcatt

        ARS_UCD_addY  accatgcccacggagtgtgagtagtcctgctggtgcagagcaacgactctgctgactgctgttctagtgt
     TibetanAntelope  accatgcccacggagtgtgagtagttctgctagtgcagagcaacgactctgctgactgctgttctagtgt

        ARS_UCD_addY  tcatgagaaaccgatctattttcaggctcttttaacaagctgctggcttgtatgtaaggaggaggggaaa
     TibetanAntelope  tcatgagaaaccgatctattttcaggctcttttaacaagctgctggcttgtacgtaaggaggagggcaaa

        ARS_UCD_addY  gagcttttttcaagatttcatgagaaatagaccaatgagactgaaagctgctactttatttgtttcctta
     TibetanAntelope  gagctttttgcaagacttcatgagaaatatactaatgagactgaaagctgctacattatctgtttcctta

        ARS_UCD_addY  gagagctaaaaagctaaaaatcaaaaatgaaatgcttgcatagcattcatgttatatagtttagtatgac
     TibetanAntelope  gagggctaaaaagctaaaaatcaaaaatgaaacgcttgcatagcagtcatgttatatagtttagtatgac

        ARS_UCD_addY  aactataacatgtttatgttttcacagcttaatgctaccaaggtaaaggattgggagacagtatcagcaa
     TibetanAntelope  aactataacatgtttatgttttcacagcttaatgctaccaaggtgaaggattgggagatagtatcagcca

        ARS_UCD_addY  tgtgaaaaatttacatcaaatttcctaattgcatttggttgcctgaaatatgcatttataataacaggtt
     TibetanAntelope  tgtgaaaaatttacgtgaaatttcctaattgcatttggttgcctgaaatatacatttataataacagggt

        ARS_UCD_addY  ttttttttttttcattaataaaagagaaaggaagaaatctgtagaggttgaagcctatctgggcatttgc
     TibetanAntelope  tttttt------cactaataaaagagaaaggaagaaatctgtagatgttgaagcctatttgggcatttgc

        ARS_UCD_addY  tgaacacttagaatgacttctgttattcaaaactatttctcatagggtttttatggtcttcacagagtat
     TibetanAntelope  tgaacacttagaatgacttctgttattcaaaactatttctcatagggtttttatgttcttcatagagtat

        ARS_UCD_addY  ctaattttgaaagctattagagtggaaaggataaaagaatattcttaataaacttaatgtattagtaaga
     TibetanAntelope  ctaattttgaaagctattacagtggaaaggataaaaaaatgttcttaataaacttaatgtattagtaaga

        ARS_UCD_addY  gcaataaggaagtaaacacagcatagtgaaaaatcatgagctaatcagcagaaaattctaagaaataaac
     TibetanAntelope  gcaataaggaagtaaacacagcataatgataaatcatgagccaatgagcagaaaatgctaagaaataaac

        ARS_UCD_addY  attttaatt----------------acaaagttccacttataccctgaccatggtactattgttgagagt
     TibetanAntelope  attttaattgagtaggttatggcttacaaagtcccacttataccctgaccatggtactattgttgagagt

        ARS_UCD_addY  acctggtctgcacatatctaggaggcacatgcttaataaccttctaaaatattattgtattcctcatagg
     TibetanAntelope  acctggtctgcacttatctaggaggcacatgcttaataacctcctaaaatattattttattcctcatagg

        ARS_UCD_addY  agggagaactattacctatatgtagtacctatgttgtttctgaaagataatatgtttcatatatttctgt
     TibetanAntelope  agggagaactattacctgtatgtagtatctatgttgtttctgaaagataatatgtttcatacatttctgt

        ARS_UCD_addY  tgcagtcagttcaaacctatactcaaggaaagggagacaggcatctcaacagagaaggcatgaccagaaa
     TibetanAntelope  tggagtcagttcaaacatatactcaaggaaagggagacaggcacctcaacagagaaagcatgaccaggaa

        ARS_UCD_addY  gagttttgtgccatgtgtctgcgatcttgctttatacaggcctctacccactttaaactggactcaaaac
     TibetanAntelope  gatttttgtgccatgtgtctgtgatctggctttat---g----ctacccactttagactggactcagaac

        ARS_UCD_addY  agtttcaaaatactgctttttcttattaagtaactagtttataaggcaacaaataaatttcctttaagac
     TibetanAntelope  agtttcaaaatactggtttt-cttattaagtaactaggttataaggcaataaataaatttcctttaagac

        ARS_UCD_addY  tgtgctatcagataatcctggaatagatttgccttacttataaacaatcttgagaaaacaaaaaggcaag
     TibetanAntelope  tgtgctatcagataatcctggaatagatttgccttatttataaacaatcttgagaaaacaaaaaggcaag

        ARS_UCD_addY  aaattgctaagtgcttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaaca
     TibetanAntelope  aaattgctaagtgcttctgcttacaatgacagtctgaccctaaagacaatgttttctaggttttgaaaca

        ARS_UCD_addY  gcttgaatacaacatctaagttttggtgctaattacctgctagttttt--ttatttttttcctttaaaag
     TibetanAntelope  gcttgaatacaacatctaaattttggtgccaattacctgctagtttttaatt-tttttttcctttaaaag

        ARS_UCD_addY  gctgtcccagcgtcctaacataacagatgcactatattttctgctaattcccgaggctcagttagttgct
     TibetanAntelope  gctgtcccagcgccctcacataacagatgcactatattttct---aattcccgaggctcagttagttgct

        ARS_UCD_addY  cactgtgtcttgtccccaggtaattcaggcctgggggaagggttccttcctccagactgattggtacagc
     TibetanAntelope  cactgtgtcttgtccccaggtaattcaggcctgggggaagggttccttcctccagactgattggtacagc

        ARS_UCD_addY  tgctcagtaagtgtaactactcagattcccaaagaattctaagtggatgttcttccacagtgtctcttgt
     TibetanAntelope  tgctcagtaagtgtaactactcagattcccaaagaattctaagtggatgttcttccacagtgtctcttgt

        ARS_UCD_addY  tctctctaatcatcatcattttaaaatttcatccacttttcattccttaatagaattttccttagtccac
     TibetanAntelope  tctctctaatcatcatcattttaaaatttcatccacttttcattcctcaatagaattttccttagtccac

        ARS_UCD_addY  agttctctggaaaggaagtaggcttctcataa-cagctgaaaaaacatatacctaaaagattctgaaaag
     TibetanAntelope  agttctctggaaaggaagtaggctgctcataaacagctgaaaaaacatatacctaaaagattttgaaaag

        ARS_UCD_addY  ctgtaataactgttatacttgatattttgctgttatgaatgaaatgctacatatttttccattttaaaag
     TibetanAntelope  ctgtaataattgttatacttgatattttgctgttatgaatgaaatgctacatatttttccattttaaaag

        ARS_UCD_addY  actaaatatgcacacattattccaattaaaaaa-tgttcatagattgatatggaggtgttcgttcatttt
     TibetanAntelope  actaaatatgcatacattattccaattaaaaaaatgttcatagattgacatggaggcgttcgttcatttt

        ARS_UCD_addY  tcataaaaatgatcttagtaactttttttcttattcatttatagctgatcttctaacgcaagtggaagga
     TibetanAntelope  tcataaaaatgatcttagtaactttttttcttattcatttatagctgatcttctagcggaagtgcaagaa

        ARS_UCD_addY  aaacccaaatgttgtttctttaaatttagctctaagatacaatacaataaactagtaaaggcccaactgt
     TibetanAntelope  aaacccaaatgttgcttctttaaatttagctctaagatacaacacaataaagtagtaaaggcccaactgt

        ARS_UCD_addY  ggatatatctgaggcctgtcaagactcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccat
     TibetanAntelope  ggatatatctgagacctgtcaagactcctacaacagtgtttgtgcaaatcctgagactcatcaaacccat

        ARS_UCD_addY  gaaagacggtacaaggtatactggaatccgatctctgaaacttgacatgaacccaggcactggtatttgg
     TibetanAntelope  gaaagacggtacaaggtatactggaatccgatctctgaaacttgacatgaacccaggcactggtatttgg

        ARS_UCD_addY  cagagcattgatgtgaagacagtgttgcagaactggctcaaacaacctgaatccaacttaggcattgaaa
     TibetanAntelope  cagagcattgatgtgaagacagtgttgcaaaactggctcaaacaacctgaatccaacttaggcattgaaa

        ARS_UCD_addY  tcaaagctttagatgagaatggccatgatcttgctgtaaccttcccagaaccaggagaagatggactggt
     TibetanAntelope  tcaaagctttagatgagaatggtcatgatcttgctgtaaccttcccagaaccaggagaagaaggactggt

        ARS_UCD_addY  aagtgattactgaaaataacatgctaaaaaccttgttatgtgtttattcataatgtgaatgaatagtagt
     TibetanAntelope  aagtgattactgaaaataacatgctaaaaaccttgttatgtatttattcataatgtgaatggacagtagt

        ARS_UCD_addY  gaaaaataactaccagtttcctgtgcttataagccagacaaaggcaccttaccccagtggtagccctgta
     TibetanAntelope  gaaaaataactaccggtttcctgtgcttataagccagacaaaggtaccttaccccgatggtagccctgta

        ARS_UCD_addY  ctcaataaaagtaggtgtcccatttcacatcctatgaaacactctcttgatactttgactttgcatgagg
     TibetanAntelope  cccaataaaagtaggtgtcctgtttcacaccctatgaaa-actctcttgatacttttactttgcatgagg

        ARS_UCD_addY  atttaaaagaaaaaaagttataccatggtccttaagtttttagggaattctttggaattgagaatgaaat
     TibetanAntelope  atttaaaagaaaaaaagttataccacggtccttaagtttttaaggaattcttttgaactgaaattgaaat

        ARS_UCD_addY  ataaaatgctttccgttgatgtgctacatgattatataaataaaaacatgaagtcttcacagtggattct
     TibetanAntelope  ataaaatgctttccattgatgtgctacatgattatataaatgaaaacatgaagtcttcacagtggattct

        ARS_UCD_addY  agtactcacccaacaacacattttttcccccagaagagtgaccaatttgttaaaattcttttgcttaata
     TibetanAntelope  agtacacacacaacgacacattttttcccccagaagagtgacaaatttgttaaaattcttttgcttagta

        ARS_UCD_addY  aggcagaaaaatgaactctacaagttataattaaaataaaatgcttttacttatagaaattaactagata
     TibetanAntelope  aagcagaaaaataaactctaaaagttataattaaaataaaatgcttttacttatagaaattaactagata

        ARS_UCD_addY  tatgttcaggtttatatactattaaatatactatatttaagatctctcatgataaatatgttccttgttt
     TibetanAntelope  tatgttttg-tttatatactattaaatacactatatttaagatctctcatgataaatacgttccttgttt

        ARS_UCD_addY  tatagactattgatgcactgatgtatatgtggattactttgtgaattacccctggtaaaattaaaaattt
     TibetanAntelope  tatagactattgatgcactgatgtaaatgtggattaccgtgtgaattactcctaataaaataaaaaattt

        ARS_UCD_addY  caggctagttaacttgtactacttagctattttctgaactgtcttactgttctttaacaggagttaactt
     TibetanAntelope  caggctagttaacttgtactacccagctattttctgaactgtcttactgttctttaacaggagtcaactt

        ARS_UCD_addY  aggtaatgtcaactaatttaatataaagtcaaacagaaaataatgccttatatattataaaaattaataa
     TibetanAntelope  aggtgatgtcaactaatttaatataaagtcaaacagacaataatgccttatatattataaaaattaataa

        ARS_UCD_addY  aaaaccattttaaaatctagtataagtttagagctactcactcttctggcttatctatgcttgtatttac
     TibetanAntelope  aaaa---ttttaaaatctagtatgagtttagagctactcactcttctggcttatctatgcttgtatttac

        ARS_UCD_addY  ttctgttttcaaaaaattttttaatgtgaccataccttttatttccagttattgatataatttacaacaa
     TibetanAntelope  ttctgttttcaaaaacttttttaatgtgaccatactttttatttccatgtattgatataatttacaacaa

        ARS_UCD_addY  aagattatacttgcaagctttatagtttttaaatggtcttatttgtagtgaatatcatatctaaatgata
     TibetanAntelope  aagattatacttgcaagctttatagtttttaaatggccttgtttgtaaagaatatcatatctaaatgata

        ARS_UCD_addY  tctaaatgtaaagtaaatcatacctaaatgaaaacatattctttaagtcattataaaattttccaggtga
     TibetanAntelope  tctaaatgtaaagtaaatcatatctaaatgaaaacatattctttaagagattgtaaaattttccaagtga

        ARS_UCD_addY  tcaatttttctttaaatatactacataaaatgttattgactcccaaaatgatgttattttgtataatctt
     TibetanAntelope  tcaatttttctttaaatatactacataaaatgttattaactccccaaatgatgttattttgtataatctt

        ARS_UCD_addY  aaataccaataattaccaggtctattttggttttagtgtaggataaaaaagaatgtgttcttttttctag
     TibetanAntelope  aaataccaataattaccaggtctattttgattttaatataggataaaaaagaatgtgttcttttt-ctag

        ARS_UCD_addY  gtagcattttaatgatcaaagttggtgacgtgacagaggtcttaagtattattaaacagatgattaataa
     TibetanAntelope  gtagcattttaatgatcaaagttggcgacatggcagaggttttat-tattattaaacagatgactaataa

        ARS_UCD_addY  gatgtattcctcagacttttccatataaaaggaaaaatgtctcaaattcatgaaaagattggtacaggag
     TibetanAntelope  gatgtattcctcagaattttccatataaaaggaaaaatgtctcaaattcatgaaaagattggtgcaggag

        ARS_UCD_addY  gaggattagcaaattgtagtttaaatatctgaatggaaacactttttagtgaaagaataaa-gggaatat
     TibetanAntelope  gaggattagcaaattgttatttaaatatctgaatggaaacatattttagtgaaagaaaaaaagggaatat

        ARS_UCD_addY  cattgtatcttcttctgagtctgtgcctctctctcttggagttagtctttccaaccctatatacttacca
     TibetanAntelope  cattgtatcttcttctgaatctgtgcctctctctcttggagttggtctttccaaccctatatacttacca

        ARS_UCD_addY  ctatcttcatccctctaccttcctttttcccattacatctgtgcagtactgggtggcaactattgtgttt
     TibetanAntelope  ctaccttcatcactctaccttcctttttcccattacatctgtgcagtactgggtggcaactattttgttt

        ARS_UCD_addY  cggtgttaatatccaagtttccctgaataagaccaagtgaatggaggatgaatgagtatacctatccctc
     TibetanAntelope  cggtgttaatatccaaatttccctgaacaagaccaagtgaatggagaatgaatgagtaaacctatccctc

        ARS_UCD_addY  caggggtcatcagacatatttagccaccatatttaatcaataagcaggaagacataagctagccttgtcc
     TibetanAntelope  cagaagtcatcagacatatttagccaccatagttaatcaataagcaggaagacataagctaggcttgtcc

        ARS_UCD_addY  ttcttctttcctccctgctcctttctcttctcttccccctctccctttactgtcatccatcagtattttc
     TibetanAntelope  ctcttctttcctccctgctcctttctcttctcttccccc-ctccctttactgtcatccatcagtatattc

        ARS_UCD_addY  agagcatctattatgtgtcaggcattcagatactcaaacggaggaaaacaagaataaacaagacaaagat
     TibetanAntelope  agagcatctattatgtgtcaggcattcagatactcaaactgaggaaaacaagaataaacaagacaaagat

        ARS_UCD_addY  ctgaccacaggggaatccctatggctactgtagacttttgagccataaaggaagaatcaagcctagtgta
     TibetanAntelope  ctgaccacaggggaattcctatggctcctgtagacttttgagccataaaggaagaaccaagcctagtgta

        ARS_UCD_addY  aatgaaaattccttaatgctgtgccttttaaaaagaaatgtgacataagcaaaatgattagtttctttct
     TibetanAntelope  aatgaaaattccttaatgctgtgcagtttaaaaagaaatgtgacataagcaaaatgattagtttctttct

        ARS_UCD_addY  ttaataatgagtccttgaggtaggagagtgttttgggatctattattaactcttctttcctttccataca
     TibetanAntelope  ttaataatgactccttgcggtaggagagtgtttggggatgtattactaactcttctttcctttccataca

        ARS_UCD_addY  gactccttttttagaagtcaaggtaacagacacaccaaaaagatctaggagagattttgggcttgattgt
     TibetanAntelope  gaatccttttttagaagtcaaggtaacagacacaccaaaaagatctaggagagattttgggcttgattgt

        ARS_UCD_addY  gatgaacactccacagaatctcgatgctgtcgttaccctctaactgtggattttgaagcttttggatggg
     TibetanAntelope  gatgagcactccacagaatctcgatgctgtcgttaccctctaactgtggattttgaagcttttggatggg

        ARS_UCD_addY  attggattattgcacctaaaagatataaggccaattactgctctggagaatgtgaatttgtatttttgca
     TibetanAntelope  attggattattgcacctaaaagatataaggccaattactgctctggagaatgtgaatttttatttttgca

        ARS_UCD_addY  aaagtatcctcatacccatcttgtgcaccaagcaaaccccagaggttcagccggcccctgctgtactcct
     TibetanAntelope  aaagtatcctcatacccatcttgtgcaccaagcaaaccccaaaggttcagctggcccttgctgtactcct

        ARS_UCD_addY  acaaagatgtctccaattaatatgctatattttaatggcgaaggacaaataatatacgggaagattccag
     TibetanAntelope  acaaagatgtctccaattaatatgctatattttaatggcaaagaacaaataatatatgggaagattccag

        ARS_UCD_addY  ccatggtagtagatcgctgtgggtgttcatgaggtctatatttggttcatagcttcctcaaacatggaag
     TibetanAntelope  gcatggtagtagatcgttgtgggtgctcatgagatttatatttggttcatagcttcctaaaacacagaag

        ARS_UCD_addY  gtcttcccctcaacaattttgaaactgtgaaattatgtaccacaggctataagcctagagtatgctacag
     TibetanAntelope  gtcttcccctcaacaattttgaaactgtgaaattatgtaccacgggctataagcctagagtatgctacag

        ARS_UCD_addY  tcacttaagcacaagctacagtatatgagctaaaaagagagaatatatgcaatggttggcatttaaccat
     TibetanAntelope  tcacttaagcacaagctacagtatatgaactaaaa-gagagaatatatgcaatggttggcatttaaccat

        ARS_UCD_addY  ccaaacaaatcgtataataaaaagttttatgatttccagagtttttgaactaggagatcaaattccattt
     TibetanAntelope  caaaacaaatcgtataataagaagttttatgatttccagagtttttcaactaggagatcaaattccattt

        ARS_UCD_addY  atgttgaaatatattacaacacatgcaggtgaatgaaagcaattctccttgtcttctggtgaattaaagg
     TibetanAntelope  atgttcaaatatattacaacatatgcaggtgaatgaaagcaattctccttgtcttctggtgaattaaagg

        ARS_UCD_addY  agtatgctttaaaatctatttctctacagtttcacttaatatttacagaaaaatctatatgtagtattgg
     TibetanAntelope  agtatgctttaaaatctgtttctttacagtttcacttaatatttacagaaaaatctatatgtagtattgg

        ARS_UCD_addY  taaaatgcagtattgttatataccattatttgaaacatccttaaacacttgaatttatattgtatgatag
     TibetanAntelope  taaaatgaagtattgttatataccattatttgaaacatccttaaacacttgaatttatattgtatgatag

        ARS_UCD_addY  catacttggtaagatgagattccacaaagtagggatggcacaccatacgcaggttaccattcctatactg
     TibetanAntelope  catacttggtaagatgagattccacaaaatagggatggtacgccatatgcaagttaccattcctattctg

        ARS_UCD_addY  attgatacagtacattaacagtttttgccaatggtgctaatacaataggctgaatggctgatgttatcag
     TibetanAntelope  attgatacagtacattaatagtttatgccaatggtgctaatacaataggctgaatggctgatgttatcag

        ARS_UCD_addY  gtttatcaagcaaaaaacattcaggaaagtaataagtttctcctttcttcaggtgcattttcacactcct
     TibetanAntelope  gtttatcaagcaaaaaacattcagtaaagtaataagtttctcctttcttcaggtgcattttcacactcat

        ARS_UCD_addY  ccctatgggcaatggatgttctatagagaaagaaaactcattttcctagaggtctacattcaattctgta
     TibetanAntelope  ccctatgggcaatggattttccataaagaaagaaaaatcatttttctagaggtctacattcaattctgta

        ARS_UCD_addY  gcatacttggagaagctgcattgaaaaggcagtcaaaaagtattcattttggtcaaaatttcaaaattat
     TibetanAntelope  gcatacttggagaagctgcatttaaaaggcagtcaaaaagtgttcatttttgtcaaaatttcaaaattat

        ARS_UCD_addY  agcctgcctttgcaatactgcagcttttaggatgaaataatggaaatgactgattctatcaatattgtat
     TibetanAntelope  agcctgcctttgcaatactgcagctttcaggatgaaataatggaaatgactgattctatcaatattgtat

        ARS_UCD_addY  aaaaagattttgaaatagttgcatttatataatatgtatacaatattgttttgtaaataaatgtctcctt
     TibetanAntelope  aaaaagattttgaaacagttgcatttatataatatgtatacaatattgttttgtaaataaatgtctcctt

        ARS_UCD_addY  ttttatttactttggtatatttttacagtaaggacatttcaaattaagtattaaggcacaaagacatgtc
     TibetanAntelope  ttttatttactttggtatatttttacagtaaggacatttcaaattaagtattaaggcacaaagacatgtc

        ARS_UCD_addY  atgtaggacataaaagcaaaagcttatattttggagcaaattagttgattaaatagtggtcttaaaactc
     TibetanAntelope  atgtaggacataaaagcaaatgcttatattttggagcaaattagttgattaaatagtggtcttaaaactc

        ARS_UCD_addY  catatgctaatggttagatggttatattacaatcattttatatttttttacattattagcattcacttat
     TibetanAntelope  catatgctaatggttagatggttatattacaatcattttatatttttttacattgttagcattcacttat

        ARS_UCD_addY  ggattcatgatggctgtataatgtgaatgtgaaatttcaatggtttactgtcattgtattcaaatctcaa
     TibetanAntelope  ggattcatgatggctgtataatgtgaatgtgaaatttcaatggtttactgtcattgtattcaaatctcaa

        ARS_UCD_addY  cgttccattattttaatacttataaatattaagcataccaaaatgatttaactctattatctgaaatcag
     TibetanAntelope  cgttccattattttaatacttataaatattaagcaaaccaaaatgatttaactctattatctgaaatcag

        ARS_UCD_addY  aataataaactgatgatatcttacaaattgttaattttattttataatttgataatgaatatatttctgc
     TibetanAntelope  aataataaactgatgatatcttacaaattgttaattttattttataatttgataatgaatatatttctgc

        ARS_UCD_addY  atatatttactactattttgtaaatcaggattttgttaatcaaataaattgtacttatgattaagtgaaa
     TibetanAntelope  atatatttactactattttgtaaattaggattttgttaatcaaataaattgtacttatgattaagtgaaa

        ARS_UCD_addY  ttatttcttacatccaatgtgtagaaacaatttaagttatattaaagtgttttcaccttttttgaaaga
     TibetanAntelope  ttatttcttacatctaatgtgtagaaacaatgtaagttatattaaagtgttttcaccttttttgaaaga

Alignment block 2 of 179 in window, 6278864 - 6278869, 6 bps 
B D             ARS_UCD_addY  agattc
                      Rabbit  agatcc
              GreenSeaTurtle  tgattc
                       Horse  agattc
             ChinesePangolin  agattc
                       Human  agattc
                    Aardvark  agaatc
                   BlueWhale  agattc
     CommonBottlenoseDolphin  agattc
                 BelugaWhale  agattc
                         Pig  agattc
              FloridaManatee  agattc
                     Tuatara  ggattc
                       Gayal  agattc
               AmericanBison  agattc
                  LesserKudu  agattc
                 CommonEland  agattc
                     WildYak  agattc
                 DomesticYak  agattc
                 GreaterKudu  agattc
                    Bushbuck  agattc
                       Bongo  agattc
                      Impala  agattc
                        Suni  agattc
                Klipspringer  agattc
                WaterBuffalo  agattc
              AfricanBuffalo  agattc
                   Sitatunga  agattc
               MountainNyala  agattc
                 NilgiriTahr  agattc
B D                     ARS1  agattc
                    WildGoat  agattc
                SiberianIbex  agattc
              AlpineMuskDeer  agattc
       ChineseForestMuskDeer  agattc
            SiberianMuskDeer  agattc
                BlackMuntjac  agattc
                MountainGoat  agattc
                       Sheep  agattc
             EuropeanMouflon  agattc
              AsiaticMouflon  agattc
                   SnowSheep  agattc
                BighornSheep  agattc
                BarbarySheep  agattc
                      Bharal  agattc
               IndianMuntjac  agattc
               ReevesMuntjac  agattc
              PereDavidsDeer  agattc
             WhiteLippedDeer  agattc
                 YarkandDeer  agattc
                     RedDeer  agattc
                     HogDeer  agattc
             WhiteTailedDeer  agattc
                    MuleDeer  agattc
                    Reindeer  agattc
              EasternRoeDeer  agattc
              WesternRoeDeer  agattc
                 EurasianElk  agattc
            ChineseWaterDeer  agattc
                       Okapi  agattc
                     Giraffe  agattc
                   Pronghorn  agattc
               JavaMouseDeer  agattg
             LesserMouseDeer  agattg
                  ZebuCattle  agattc
                        Gaur  agattc
                    Steenbok  agattc
          PrzewalskisGazelle  agattc
               RoyalAntelope  agattc
                 KirksDikDik  agattc
                      Herola  agattc
              MaxwellsDuiker  agattc
               HarveysDuiker  agattc
                       Oribi  agattc
             ThomsonsGazelle  agattc
                     Gerenuk  agattc
                       Saiga  agattc
                   Springbok  agattc
               BohorReedbuck  agattc
            DefassaWaterbuck  agattc
                      Lechwe  agattc
                     Gemsbok  agattc
          ScimitarHornedOryx  agattc
                RoanAntelope  agattc
               SableAntelope  agattc
              BlueWildebeest  agattc
                        Topi  agattc
         GreaterHorseshoeBat  agattc
     WesternEuropeanHedgehog  agattc
B                    chicken  aggcac
                MonkParakeet  aggtac
                  HouseMouse  ggactc
            ChineseTreeShrew  agactc
                  RockPigeon  aggtac
          TropicalClawedFrog  tgattt
                      Alpaca  agattc
           WildBactrianCamel  agattc
                ArabianCamel  agattc
                         Dog  agattc
                  Coelacanth  agattt
                  MinkeWhale  agattc
                 KillerWhale  agattc
                  SpermWhale  agattc
              ChacoanPeccary  agattc

Alignment block 3 of 179 in window, 6278870 - 6278883, 14 bps 
B D             ARS_UCD_addY  actggtgtggcaag
                      Rabbit  accggtgtggcaag
              GreenSeaTurtle  accagtgtggcaag
                       Horse  actggtgtggcaag
             ChinesePangolin  actggtgtggcgag
                       Human  actggtgtggcaag
                    Aardvark  actggtgtggcaag
                   BlueWhale  actggtgtggcaag
     CommonBottlenoseDolphin  actggtgtggcaag
                 BelugaWhale  actggtgtggcaag
                         Pig  actggtgtggcaag
              FloridaManatee  actggtgtggcaag
                     Tuatara  agccatgtggtgag
                       Gayal  actggtgtggcaag
               AmericanBison  actggtgtggcaag
                  LesserKudu  actggtgtggcaag
                 CommonEland  actggtgtggcaag
                     WildYak  actggtgtggcaag
                 DomesticYak  actggtgtggcaag
                 GreaterKudu  actggtgtggcaag
                    Bushbuck  actggtgtggcaag
                       Bongo  actggtgtggcaag
                      Impala  actggtgtggcaag
                        Suni  actggtgtggcaag
                Klipspringer  actggtgtggcaag
                WaterBuffalo  actggtgtggcaag
              AfricanBuffalo  actggtgtggcaag
                   Sitatunga  actggtgtggcaag
               MountainNyala  actggtgtggcaag
                 NilgiriTahr  actggtgtggcaag
B D                     ARS1  actggtgtggcaag
                    WildGoat  actggtgtggcaag
                SiberianIbex  actggtgtggcaag
              AlpineMuskDeer  actggtgtggcaag
       ChineseForestMuskDeer  actggtgtggcaag
            SiberianMuskDeer  actggtgtggcaag
                BlackMuntjac  actggtgtggcaag
                MountainGoat  actggtgtggcaag
                       Sheep  actggtgtggcaag
             EuropeanMouflon  actggtgtggcaag
              AsiaticMouflon  actggtgtggcaag
                   SnowSheep  actggtgtggcaag
                BighornSheep  actggtgtggcaag
                BarbarySheep  actggtgtggcaag
                      Bharal  actggtgtggcaag
               IndianMuntjac  actggtgtggcaag
               ReevesMuntjac  actggtgtggcaag
              PereDavidsDeer  actggtgtggcaag
             WhiteLippedDeer  actggtgtggcaag
                 YarkandDeer  actggtgtggcaag
                     RedDeer  actggtgtggcaag
                     HogDeer  actggtgtggcaag
             WhiteTailedDeer  actggtgtgtcaag
                    MuleDeer  actggtgtgtcaag
                    Reindeer  actggtgtgtcaag
              EasternRoeDeer  actggtgtggcaag
              WesternRoeDeer  actggtgtggcaag
                 EurasianElk  actggtgtggcaag
            ChineseWaterDeer  actggtgtggcaag
                       Okapi  actggtgtggcaag
                     Giraffe  actggtgtggcaag
                   Pronghorn  actggtgtggtaag
               JavaMouseDeer  gctggtgtggcaag
             LesserMouseDeer  gctggtgtggcaag
                  ZebuCattle  actggtgtggcaag
                        Gaur  actggtgtggcaag
                    Steenbok  actggtgtggcaag
          PrzewalskisGazelle  actggtgtggcaag
               RoyalAntelope  actggtgtggcaag
                 KirksDikDik  actggtgtggcaag
                      Herola  actggtgtggcaag
              MaxwellsDuiker  actggtgtggcaag
               HarveysDuiker  actggtgtggcaag
                       Oribi  actggtgtggcaag
             ThomsonsGazelle  actggtgtggcaag
               GrantsGazelle  actggtgtggcaag
                     Gerenuk  actggtgtggcaag
                       Saiga  actggtgtggcaag
                   Springbok  actggtgtggcaag
               BohorReedbuck  actggtgtggcaag
            DefassaWaterbuck  actggtgtggcaag
                      Lechwe  actggtgtggcaag
                     Gemsbok  actggtgtggcaag
          ScimitarHornedOryx  actggtgtggcaag
                RoanAntelope  actggtgtggcaag
               SableAntelope  actggtgtggcaag
              BlueWildebeest  actggtgtggcaag
                        Topi  actggtgtggcaag
         GreaterHorseshoeBat  actggtgtggcaag
     WesternEuropeanHedgehog  actggtgtggcaag
B                    chicken  accagtgtggcaag
                MonkParakeet  accagtgtggcaag
                  HouseMouse  cctggcgtggcagg
            ChineseTreeShrew  actggtgtggcaag
                  RockPigeon  accagtgtggcaag
          TropicalClawedFrog  attagtgtgacaga
                      Alpaca  actggtgtggcaag
           WildBactrianCamel  actggtgtggcaag
                ArabianCamel  actggtgtggcaag
                         Dog  actggggtggcaag
                  Coelacanth  atcagtgtggtgag
                  MinkeWhale  actggtgtggcaag
                 KillerWhale  actggtgtggcaag
                  SpermWhale  actggtgtggcaag
              ChacoanPeccary  actggtgtggcaag

Alignment block 4 of 179 in window, 6278884 - 6279024, 141 bps 
B D             ARS_UCD_addY  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                      Rabbit  t-tgtctctcaagc------tgttcatgca-ttac-a----attttgcttgccattact---------ga
              GreenSeaTurtle  t-tgtttctcggat------tatactcgcctttag-g----gatctgtttagtactg-------------
                       Horse  t-tgtctctcagac------tgtacaggca-ttaa-a----attttgcttggcattgct---------ca
             ChinesePangolin  t-tgtctctcagcc------tgcacaggca-ttaa-a----attttgcttggcattact---------ca
                       Human  t-tgtctctcagac------tgtacatgca-ttaa-a----attttgcttggcattact---------ca
                    Aardvark  t-gttctctcagac------tgtacatgca-ttaa-a----accttgcttggcattact---------ca
                   BlueWhale  t-tgtctctcagac------tgtgcaggca-ttaa-c----attttgcttggcattact---------ca
     CommonBottlenoseDolphin  t-tgtctctcagac------tgtgcaggca-ttaa-c----attttgcttggcattact---------ca
                 BelugaWhale  t-tgtctctcagac------tgtgcaggca-ttaa-c----attttgcttggcattact---------ca
                         Pig  t-tgtctctcagac------agtgcaggca-ttaa-a----attttgcttggcgttact---------ca
              FloridaManatee  tgtgtctctcagac------tgtacgtgca-ttaa-a----attttgcttggcattact---------ca
                     Tuatara  t-tgtctctcagtt------tgcactttca-ttta-g----tcatccatt--tagtact---------ta
                       Gayal  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
               AmericanBison  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                  LesserKudu  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                 CommonEland  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                     WildYak  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                 DomesticYak  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                 GreaterKudu  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                    Bushbuck  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggagttact---------ca
                       Bongo  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                      Impala  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                        Suni  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                Klipspringer  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                WaterBuffalo  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              AfricanBuffalo  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                   Sitatunga  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
               MountainNyala  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                 NilgiriTahr  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
B D                     ARS1  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                    WildGoat  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                SiberianIbex  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              AlpineMuskDeer  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttgct---------ca
       ChineseForestMuskDeer  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttgct---------ca
            SiberianMuskDeer  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttgct---------ca
                BlackMuntjac  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                MountainGoat  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                       Sheep  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
             EuropeanMouflon  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              AsiaticMouflon  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                   SnowSheep  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                BighornSheep  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                BarbarySheep  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                      Bharal  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcattact---------ca
               IndianMuntjac  t-tgtctctcagcc------tgagcaggca-ttaa-c----gtttggcttggcgttact---------ca
               ReevesMuntjac  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              PereDavidsDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
             WhiteLippedDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                 YarkandDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                     RedDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                     HogDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
             WhiteTailedDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                    MuleDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                    Reindeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              EasternRoeDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              WesternRoeDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                 EurasianElk  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
            ChineseWaterDeer  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                       Okapi  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                     Giraffe  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ga
                   Pronghorn  t-ggcctctcagac------tgggcaggca-ttac-c----gtttggcttggcgttact---------ca
               JavaMouseDeer  t-tgtctctcagac------tgtgcaggca-ctaa-c----gttttgcttggcattact---------ca
             LesserMouseDeer  t-tgtctctcagac------tgtgcaggca-ctaa-c----gttttgcttggcattact---------ca
                  ZebuCattle  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                        Gaur  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                    Steenbok  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
          PrzewalskisGazelle  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
               RoyalAntelope  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgtgact---------ca
                 KirksDikDik  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                      Herola  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              MaxwellsDuiker  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
               HarveysDuiker  t-tgtctctcagcc------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                       Oribi  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
             ThomsonsGazelle  t-tgtctctcagac------tgggcaggca-gtaa-cgtttgtttggcttggcgttact---------ca
               GrantsGazelle  t-tgtctctcagac------tgggcaggca-gtaa-cgtttgtttggcttggcgttact---------ca
                     Gerenuk  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                       Saiga  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                   Springbok  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
               BohorReedbuck  t-tgtctctctgac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
            DefassaWaterbuck  t-tgtctctctgac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                      Lechwe  t-tgtctctctgac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                     Gemsbok  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
          ScimitarHornedOryx  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                RoanAntelope  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
               SableAntelope  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
              BlueWildebeest  t-tgtctcttagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
                        Topi  t-tgtctctcagac------tgggcaggca-ttaa-c----gtttggcttggcgttact---------ca
         GreaterHorseshoeBat  t-tgtctctccgac------tgtacaggca-ttaa-a----atttggcttggcattact---------ca
     WesternEuropeanHedgehog  t-tgtc-cactgac------tgtacaggca-ttca-a----tttttgcttggcattata---------ca
B                    chicken  c-cgtctctcagat------tgcatttgct-gtcacg----gatctgtttagaact-------------g
                MonkParakeet  c-tgtctctcagat------tgcatttgct-ttcacg----gatctgtttagtact-------------g
                  HouseMouse  t-tgtctctcggacggtacatgcactaa--------t----atttcacttggcattact---------ca
            ChineseTreeShrew  t-tgtctctcagac-gtgcatgcattaa--------a----atcttgcttggcgttact---------ca
                  RockPigeon  c-tgtctctcagat------tgcatttgct-ttcacg----gatctatttagtaccaaaagggaaagggg
          TropicalClawedFrog  t-tgactttaaact------tacattag--------g----agtcagtttgactccaca---------tt
                      Alpaca  t-tgtctctcaggc------tgtgcaggca-ttaa-a----attttgcttggcattact---------ca
           WildBactrianCamel  t-tgtctctcaggc------tgtgcaggca-ttaa-a----attttccttggcattact---------ca
                ArabianCamel  t-tgtctctcaggc------tgtgcaggca-ttaa-a----attttgcttggcattact---------ca
                         Dog  t-tgtctctcagac------tgtacaggct-ctag-g----attttgcttggcattact---------ca
                  MinkeWhale  t-tgtctctcagac------tgtgcaggca-ttaa-c----attttgcttggcattact---------ca
                 KillerWhale  t-tgtctctcagac------tgtgcaggca-ttaa-c----attttgcttggcattact---------ca
                  SpermWhale  t-tgtctctcagac------tgtgcaggca-ttaa-c----attttgcttggcattact---------ca
              ChacoanPeccary  t-tgtctgtcacac------agtgcaggca-ttaa-a----attttgcgtggcgttact---------ca

                ARS_UCD_addY  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                      Rabbit  aaagc-aaaagaaa---agt---aaaag-g-------aagacataagaacaag-----g-----gaaagg
              GreenSeaTurtle  -------aaagaaa---aaa---ataag-a-------aagcaa-----ggaag-----g-----gaaaag
                       Horse  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagagcaag-----g-----aaaaag
             ChinesePangolin  aaacc-aaaagaaa---aat---aaaag-g-------aaggaataagaacaag-----a-----aaaaga
                       Human  aaagc-aaaagaaa---agt---aaaag-g-------aagaaacaagaacaag-----a-----aaaaag
                    Aardvark  aaagc-aaaagaga---agt---aaga--g-------aagaaataagaacaag-----g-----aaaaag
                   BlueWhale  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
     CommonBottlenoseDolphin  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagaacaag-----g-----aaaaag
                 BelugaWhale  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
                         Pig  aaagc------aaa---agt---aaaag-g-------aagaaataagaacaag-----g-----agaaag
              FloridaManatee  aaagc-aaaagaaa---agt----aaaa-a-------aagacacaagaacaag-----g-----agaaag
                     Tuatara  aaggg-aaaaaaaa---gacttagaaga-a-------aagaga-aaggaca-------g-----gaaaag
                       Gayal  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
               AmericanBison  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                  LesserKudu  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaaccag-----g-----gaaaag
                 CommonEland  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                     WildYak  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                 DomesticYak  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                 GreaterKudu  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                    Bushbuck  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                       Bongo  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagatcaag-----g-----gaaaag
                      Impala  aaagc-aaaagaaa---agc---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                        Suni  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtgagaacaag-----g-----aaaaag
                Klipspringer  aaagc-aaacgaaa---agt---aaaag-g-------aaggagtaagaacaag-----g-----aaaaag
                WaterBuffalo  aaagc-aaaagaaa---agt---aaaag-g-------aag----aagaacaag-----g-----gaaaag
              AfricanBuffalo  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                   Sitatunga  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
               MountainNyala  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                 NilgiriTahr  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
                        ARS1  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                    WildGoat  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                SiberianIbex  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
              AlpineMuskDeer  aaagc-agaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaa-
       ChineseForestMuskDeer  aaagc-agaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaa-
            SiberianMuskDeer  aaagc-agaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaa-
                BlackMuntjac  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                MountainGoat  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                       Sheep  aaagc-aaaagaaa---agt---aaaag-g-------aagcagtaagagcaag-----g-----aaaaag
             EuropeanMouflon  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
              AsiaticMouflon  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
                   SnowSheep  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
                BighornSheep  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
                BarbarySheep  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                      Bharal  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
               IndianMuntjac  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
               ReevesMuntjac  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
              PereDavidsDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
             WhiteLippedDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                 YarkandDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                     RedDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                     HogDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
             WhiteTailedDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                    MuleDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                    Reindeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
              EasternRoeDeer  aaagcaaaaagaaa---agt---aaaca-g-------aagaaggaagaacaag-----g-----gaaaag
              WesternRoeDeer  aaagcaaaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                 EurasianElk  aaagc-aagagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
            ChineseWaterDeer  aaagc-aaaagaaa---agt---aaacg-g-------aagaaggaagaacaag-----g-----gaaaag
                       Okapi  aaagc-aaaagaaa---aga---aaaag-g-------aagaagtaagaacaag-----a-----gaaaag
                     Giraffe  aaagc-aaaagaaa---aga---aaaag-gaagaagtaagaagtaagaacaag-----g-----gaaaag
                   Pronghorn  aaagc-aaaggaaa---agt---aaaag-g-------aagaagtaggaacaag-----g-----ggaaag
               JavaMouseDeer  cacgc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
             LesserMouseDeer  cacgc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                  ZebuCattle  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                        Gaur  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----gaaaag
                    Steenbok  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----taaaag
          PrzewalskisGazelle  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
               RoyalAntelope  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                 KirksDikDik  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaataag-----g-----aaaaag
                      Herola  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
              MaxwellsDuiker  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtcagaacaag-----g-----aaaaag
               HarveysDuiker  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtcagaacaag-----g-----aaaaag
                       Oribi  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
             ThomsonsGazelle  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
               GrantsGazelle  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                     Gerenuk  aaagc-aaaagaaa---agt---aaaag-a-------aagaagtaagaacaag-----g-----aaaaag
                       Saiga  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aacaag
                   Springbok  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
               BohorReedbuck  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
            DefassaWaterbuck  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagagcaag-----g-----aaaaag
                      Lechwe  aaagc-aaaagaaa---agt---aaaag-g-------aagaagcaagagcaag-----g-----aaaaag
                     Gemsbok  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
          ScimitarHornedOryx  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                RoanAntelope  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
               SableAntelope  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
              BlueWildebeest  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
                        Topi  aaagc-aaaagaaa---agt---aaaag-g-------aagaagtaagaacaag-----g-----aaaaag
         GreaterHorseshoeBat  aaagc-aaaag-aa---aag---taaaaga-------aggaaataagaacaag-----g-----gaaaag
     WesternEuropeanHedgehog  aaagc-aaaagcaa---aag---gaaacta-------aaggaagaagaagaagaacaag-----gaaaag
                     chicken  aaaga-aaagggga---aag---ggaga----------ggggggggaaaaaag-----g-----caaaaa
                MonkParakeet  aaagg-gaaggggg---agg---ggaaa------------gaaaaaaaaaagg-----g-----aaaagc
                  HouseMouse  aaagc-aaaaa----------------g---------aagaaataagaacaag-----ggaaaaaaaaag
            ChineseTreeShrew  aaagc-agaaaccacgtaag-----agg---------aaggaacaagagcaag-----g-----aaaaag
                  RockPigeon  aaggg-aaaaagaa---aag---gaaga---------aaaaaaaaagaaaaag-----g---aaaaaaag
          TropicalClawedFrog  aaggc-aacaagaaaataag---ggggg---------aaagaaataaaaaaaa-----c---ctcaagag
                      Alpaca  aaagc-aaaagaaa---aat---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
           WildBactrianCamel  aaagc-aaaagaaa---aat---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
                ArabianCamel  aaagc-aaaagaaa---aat---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
                         Dog  aaagc-aaaacaaa---agg---aaaag-g-------aagaaataagaacgag-----g-----aaaaag
                  MinkeWhale  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
                 KillerWhale  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagaacaag-----g-----aaaaag
                  SpermWhale  aaagc-aaaagaaa---agt---aaaag-g-------aagaaataagaacaag-----g-----gaaaag
              ChacoanPeccary  aaagc-aaaaga-------------------------aagaaataagaacaag-----g-----agaaag

                ARS_UCD_addY  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                      Rabbit  attgtat-agc-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
              GreenSeaTurtle  actgcac-tga-atg-----tgagatcatgcaaaagctacaaatctgtgtttata
                       Horse  attgaac-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
             ChinesePangolin  tttgtat-tga-ctt-----taaaatcatgcaaaaactgcaaatctatgtttata
                       Human  attatat-tga-ttt-----taaaatcatgcaaaaactgcaactctgtgtttata
                    Aardvark  attgtat-tga-ttt-----taaaatgatgcaaaaactgcaaatccatgtttata
                   BlueWhale  attgtac-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
     CommonBottlenoseDolphin  attgtat-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttgta
                 BelugaWhale  attgtat-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttgta
                         Pig  attgtat-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
              FloridaManatee  actgaat-tga-ttt-----caaaatcatgcaaaaactgcaaatctatgtttata
                     Tuatara  actgcac-tga-att-----caagatcatgcataaactaaaaattgctacttgca
                       Gayal  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
               AmericanBison  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                  LesserKudu  attgtac-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                 CommonEland  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                     WildYak  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                 DomesticYak  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                 GreaterKudu  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                    Bushbuck  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                       Bongo  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                      Impala  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                        Suni  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                Klipspringer  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                WaterBuffalo  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
              AfricanBuffalo  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                   Sitatunga  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
               MountainNyala  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                 NilgiriTahr  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                        ARS1  attgtat-tg-----------aaaaccatgcaaaaactgcaaatctttgtttata
                    WildGoat  attgtat-tg-----------aaaaccatgcaaaaactgcaaatctttgtttata
                SiberianIbex  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
              AlpineMuskDeer  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctatgtttata
       ChineseForestMuskDeer  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctatgtttata
            SiberianMuskDeer  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctatgtttata
                BlackMuntjac  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                MountainGoat  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                       Sheep  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
             EuropeanMouflon  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
              AsiaticMouflon  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                   SnowSheep  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                BighornSheep  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                BarbarySheep  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                      Bharal  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
               IndianMuntjac  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
               ReevesMuntjac  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
              PereDavidsDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
             WhiteLippedDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                 YarkandDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                     RedDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                     HogDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
             WhiteTailedDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                    MuleDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                    Reindeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
              EasternRoeDeer  actgtct-tga-ttt-----taaaatcatgcaaaaactgcaaatctgtgtttata
              WesternRoeDeer  actgtct-tga-ttt-----taaaatcatgcaaaaactgcaaatctgtgtttata
                 EurasianElk  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
            ChineseWaterDeer  attgtct-tga-ttt-----taaaaccatgcaaaaactgcaaatctgtgtttata
                       Okapi  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctatgtttata
                     Giraffe  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctatgtttata
                   Pronghorn  actgtaattga-ttt-----taaaaccatgcaaaaactgcaaatctatgtttata
               JavaMouseDeer  accgtag-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
             LesserMouseDeer  accgtag-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
                  ZebuCattle  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                        Gaur  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctctgtttata
                    Steenbok  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
          PrzewalskisGazelle  attgcat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
               RoyalAntelope  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                 KirksDikDik  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                      Herola  attgtgt-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
              MaxwellsDuiker  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
               HarveysDuiker  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                       Oribi  attgcat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
             ThomsonsGazelle  attgcac-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
               GrantsGazelle  attgcac-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                     Gerenuk  attgcat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttaca
                       Saiga  attgcac-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                   Springbok  attgcat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
               BohorReedbuck  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
            DefassaWaterbuck  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                      Lechwe  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                     Gemsbok  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
          ScimitarHornedOryx  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                RoanAntelope  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
               SableAntelope  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
              BlueWildebeest  attgtat-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
                        Topi  attgtgt-tga-ttt-----taaaaccatgcaaaaactgcaaatctttgtttata
         GreaterHorseshoeBat  attgtac-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
     WesternEuropeanHedgehog  attgtgg-tga-tttaaaaaaaaaatcatgcaaaaacttcagatctttgtttata
                     chicken  gctgcag-tga-ctg-----taagatcatgcaaaagctagcagtctatgtttata
                MonkParakeet  gctgcac-tga-atg-----tgagatcatgcaaaagctagcaatctatgtttata
                  HouseMouse  attgtgc-tgatttt-----taaaatgatgcaaaaactgcaaatgtatgtttata
            ChineseTreeShrew  attgtat-tga-ttt-----taaaatcatgcaaaacctgcaaatctatgtttata
                  RockPigeon  ctgcagt-gaa--tg-----tgagatcatgcaaaagctagcgatctatgtttata
          TropicalClawedFrog  attctga-cta--ca-----taagaacatgataaaattacgtgcatggggttgta
                      Alpaca  attgtct-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
           WildBactrianCamel  attgtct-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
                ArabianCamel  attgtct-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
                         Dog  agtgtgc-tga-ctt-----taaaatcatgcagagactgcaaatctgtgtttata
                  MinkeWhale  attgtac-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata
                 KillerWhale  attgtat-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttgta
                  SpermWhale  attgtat-tga-ttt-----ttaaatcatgcaaaaactgcaaatctatgtttata
              ChacoanPeccary  attgtat-tga-ttt-----taaaatcatgcaaaaactgcaaatctatgtttata

Alignment block 5 of 179 in window, 6279025 - 6279376, 352 bps 
B D             ARS_UCD_addY  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                      Rabbit  tttacctgtttatgctgatcgtggctggcccagtggatctaaatgaaaacagtgagcaaaaagaaaatgt
              GreenSeaTurtle  tttacctgttcatgctgattatacttggtccagtggctcttaatgacagtagtcagccaaaagagaatgg
                       Horse  tttacctgtttgtgctgattcttgctggtccagtggatctaaatgagaacagcgagcaaaaagaaaatgt
             ChinesePangolin  tttacctgtttatgctgattgttgctggtccagtggatctaaatgaaaacaccgagcagaaagaaactgt
                       Human  tttacctgtttatgctgattgttgctggtccagtggatctaaatgagaacagtgagcaaaaagaaaatgt
                    Aardvark  tttatctgtttatgctgattgttgctggtctagtggatctaaatgagaacaccgagcaaaaagaaaacgt
                   BlueWhale  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
     CommonBottlenoseDolphin  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
                 BelugaWhale  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
                         Pig  tttacctgtttatgctgattgttgctggtcccgtggatctgaatgagaacagcgagcaaaaggaaaatgt
              FloridaManatee  tttacctgtttatgctgattgttgctggtccagtggatctaaatgagaacagcgagcaaaaagaaactgt
                     Tuatara  tttacctgttcatgctgattatacttgctccagtggatcttaatgatagtattcagccaaatgagaatac
                       Gayal  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               AmericanBison  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                  LesserKudu  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                 CommonEland  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaagagcgagcagaaggaaaatgt
                     WildYak  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                 DomesticYak  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                 GreaterKudu  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaagagcgagcagaaggaaaatgt
                    Bushbuck  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaagagcgagcagaaggaaaatgt
                       Bongo  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaagagcgagcagaaggaaaatgt
                      Impala  tttacctatttgtgctgattgttgctggccccgtggatctgaatgagaacagcgagcagaaggaatatgt
                        Suni  tttacctatttgtgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                Klipspringer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                WaterBuffalo  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
              AfricanBuffalo  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                   Sitatunga  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaagagcgagcagaaggaaaatgt
               MountainNyala  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaagagcgagcagaaggaaaatgt
                 NilgiriTahr  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
B D                     ARS1  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                    WildGoat  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                SiberianIbex  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
              AlpineMuskDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
       ChineseForestMuskDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
            SiberianMuskDeer  tttacctatttatgctgattgttgctggcccagtggatgtgaatgagaacagcgagcagaaggaaaatgt
                BlackMuntjac  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                MountainGoat  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                       Sheep  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
             EuropeanMouflon  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
              AsiaticMouflon  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                   SnowSheep  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                BighornSheep  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                BarbarySheep  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                      Bharal  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               IndianMuntjac  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               ReevesMuntjac  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
              PereDavidsDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
             WhiteLippedDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                 YarkandDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                     RedDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                     HogDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
             WhiteTailedDeer  tttacctatttatgctgattgttgctggccccgtggatctgaatgagaacagcgagcagaaggaaaatgt
                    MuleDeer  tttacctatttatgctgattgttgctggccccgtggatctgaatgagaacagcgagcagaaggaaaatgt
                    Reindeer  tttacctatttatgctgattgttgctggccccgtggatctgaatgagaacagcgagcagaaggaaaatgt
              EasternRoeDeer  tttacctatttatgctgactgttgctggcccagtggatctgaatgaggacagcgagcagaaggaaaatgt
              WesternRoeDeer  tttacctatttatgctgactgttgctggcccagtggatctgaatgaggacagcgagcagaaggaaaatgt
                 EurasianElk  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
            ChineseWaterDeer  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                       Okapi  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                     Giraffe  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                   Pronghorn  tttacctatctatgctgattgttgctggccccgtggatctgaatgagaacagcgagcagaaggaaaatgg
               JavaMouseDeer  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
             LesserMouseDeer  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
                  ZebuCattle  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                        Gaur  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                    Steenbok  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
          PrzewalskisGazelle  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               RoyalAntelope  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                 KirksDikDik  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                      Herola  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
              MaxwellsDuiker  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               HarveysDuiker  tttacctatttatgctgactgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                       Oribi  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
             ThomsonsGazelle  tttacctatttatgctgattgttgctagcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               GrantsGazelle  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                     Gerenuk  tttacctatttatgctgactgttgctggcccagtggatctgaatgggaacagcgagcagaaggaaaatgc
                       Saiga  tttccctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                   Springbok  tttacctatttatgctgattgttgctggccccgtggatctgaatgagaacagcgagcagaaggaaaatgt
               BohorReedbuck  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
            DefassaWaterbuck  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                      Lechwe  tttacctatttatgctgattgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                     Gemsbok  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
          ScimitarHornedOryx  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                RoanAntelope  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
               SableAntelope  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
              BlueWildebeest  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
                        Topi  tttacctatttatgctgcttgttgctggcccagtggatctgaatgagaacagcgagcagaaggaaaatgt
         GreaterHorseshoeBat  tttacctgtttatgctgattgttgctggtccagtggatctaaatgagaacagcgagcaaaaagaaaatgt
     WesternEuropeanHedgehog  tttacctgtttatgctgattgttgctggtccggtgaatctaaatgagaacggcgaacagaaagaaaatgt
B                    chicken  tttacctgttcatgcagatcgcggttgatccagtggctctggatggcagtagtcagcccacagagaacgc
                MonkParakeet  tttacctgttcatgctgatttcagttgatccagtggctcttgatgacggtagtcagcccacagagaacac
                  HouseMouse  tttacctgttcatgctgattgctgctggcccagtggatctaaatgagggcagtgagagagaagaaaatgt
            ChineseTreeShrew  tttacctgtttatgctgattgtggctggtcccgtggatctaaatgaaaacagtgagccaaaagaaaatgt
                  RockPigeon  tttacctgtgcatgctgatttcagttcatcccttggctcttgatgacgggagtcagcccacagagaactc
          TropicalClawedFrog  tttacttttgtatgctggtagtattaagcccagtggatctaacagacaacaatcgagcaaca--------
                      Alpaca  tttacctgtttatgctgattgttgctggtccagtggatctgaatgagaacaacgaacaaaaagaaaatgt
           WildBactrianCamel  tttacctgtttatgctgattgttgctggtccagtggatctgaatgagaacaacgaacaaaaagaaaatgt
                ArabianCamel  tttacctgtttatgctgattgttgctggtccagtggatctgaatgagaacaacgaacaaaaagaaaatgt
                         Dog  tttacctgtttgtgctgattgttgctggcccagtcgatctaagtgagaacagtgagcaaaaagaaaatgt
                  Coelacanth  tttacctgtacgtgctggctgcactgagtccagtgggtctcactggtctgactcagactgtagaaaaagg
                  MinkeWhale  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
                 KillerWhale  tttacctatttatgctgattgttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
                  SpermWhale  tttacctatttatgctgatggttgctggtccagtggatctgaatgagaacagcgagcaaaaggaaaatgt
              ChacoanPeccary  tttacctgtttatgctgattgttgctggtcccgtggatctgaatgagaacagcgagcaaaaggaaaatgt

                ARS_UCD_addY  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                      Rabbit  ggaaaaagacgggctgtgtaatgcatgcacttggagacaaaacagtaaatattcaagaatagaagccata
              GreenSeaTurtle  agaaaaagatgaactatgcattgcatgtacatggaggcaaaatacaaaatcttccagaatagaagccata
                       Horse  ggaaaaagaggggctgtgcaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccata
             ChinesePangolin  ggaaaaagaagggctgtgtaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccata
                       Human  ggaaaaagaggggctgtgtaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccatt
                    Aardvark  ggaaaaagaggggccgtgtaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccata
                   BlueWhale  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcctcaagactagaagccata
     CommonBottlenoseDolphin  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcctcaagactagaagccata
                 BelugaWhale  ggaaaaagaggggctgtgtaatgcatgtatgtggaggcaaaacactaaatcctcaagactagaagccata
                         Pig  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcttcaagactagaagccata
              FloridaManatee  ggaaaaagaggggctgtgtaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccata
                     Tuatara  agaaaaagatggactctgcaatgcatgtacatggaggcaaaatacaaaatcttccagaatagaagccata
                       Gayal  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
               AmericanBison  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                  LesserKudu  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                 CommonEland  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                     WildYak  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                 DomesticYak  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                 GreaterKudu  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                    Bushbuck  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                       Bongo  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                      Impala  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                        Suni  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                Klipspringer  ggacaaaaaggggctgtgtaatgcatgtgtgtggagacaaaacaataaatcctcaagactagaagccata
                WaterBuffalo  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
              AfricanBuffalo  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                   Sitatunga  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
               MountainNyala  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                 NilgiriTahr  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                        ARS1  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                    WildGoat  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                SiberianIbex  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
              AlpineMuskDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatcctcaagactagaagccata
       ChineseForestMuskDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatcctcaagactagaagccata
            SiberianMuskDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatcctcaagactagaagccata
                BlackMuntjac  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
                MountainGoat  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                       Sheep  ggaaaaaaaggggctgtgtaatgcatgcttgtggagacaaaacaataaatcctcaagactagaagccata
             EuropeanMouflon  ggaaaaaaaggggctgtgtaatgcatgcttgtggagacaaaacaataaatcctcaagactagaagccata
              AsiaticMouflon  ggaaaaaaaggggctgtgtaatgcatgcttgtggagacaaaacaataaatcctcaagactagaagccata
                   SnowSheep  ggaaaaaaaggggctgtgtaatgcatgcttgtggagacaaaacaataaatcctcaagactagaagccata
                BighornSheep  ggaaaaaaaggggctgtgtaatgcatgcttgtggagacaaaacaataaatcctcaagactagaagccata
                BarbarySheep  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcgagactagaagccata
                      Bharal  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
               IndianMuntjac  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
               ReevesMuntjac  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
              PereDavidsDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaaggctagaagccata
             WhiteLippedDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaaggctagaagccata
                 YarkandDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaaggctagaagccata
                     RedDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaaggctagaagccata
                     HogDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaaggctagaagccata
             WhiteTailedDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
                    MuleDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
                    Reindeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
              EasternRoeDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
              WesternRoeDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
                 EurasianElk  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
            ChineseWaterDeer  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatccttaagactagaagccata
                       Okapi  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatcctcaagactagaagccata
                     Giraffe  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatcctcaagactagaagccata
                   Pronghorn  ggaaaaagaggggctgtgtaatgcatgtttgtggagacaaaacactaaatcctcaagactagaagccata
               JavaMouseDeer  agaaaaagaggggctgtgtaatgcatgtctgtggagacaaaacactaaatcctcaagactagaagctata
             LesserMouseDeer  agaaaaagaggggctgtgtaatgcatgtctgtggagacaaaacactaaatcctcaagactagaagctata
                  ZebuCattle  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                        Gaur  ggaaaaagaggggctgtgtaatgcatgtttgtggagggaaaacactacatcctcaagactagaagccata
                    Steenbok  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
          PrzewalskisGazelle  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
               RoyalAntelope  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                 KirksDikDik  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                      Herola  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
              MaxwellsDuiker  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacagtaaatcctcaagactagaagccata
               HarveysDuiker  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                       Oribi  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
             ThomsonsGazelle  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
               GrantsGazelle  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                     Gerenuk  gggaaaaaaggggctgtgtaacgcgtgtttgtggagacagagcaataaatcctcaagactagaagccata
                       Saiga  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcgagactagaagccata
                   Springbok  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
               BohorReedbuck  ggaaaatcaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
            DefassaWaterbuck  ggaaaatcaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                      Lechwe  ggaaaatcaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                     Gemsbok  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
          ScimitarHornedOryx  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                RoanAntelope  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
               SableAntelope  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
              BlueWildebeest  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
                        Topi  ggaaaaaaaggggctgtgtaatgcatgtttgtggagacaaaacaataaatcctcaagactagaagccata
         GreaterHorseshoeBat  ggaaaaagaggggctgtgtaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccata
     WesternEuropeanHedgehog  ggaaaaagtgggtctgtgtgatgcatgcgcttggagacagaacacgaaatcttcaagaatagaagctata
                     chicken  tgaaaaagacggactgtgcaatgcttgtacgtggagacagaatacaaaatcctccagaatagaagccata
                MonkParakeet  tgaaaaagacggactgtgcaatgcttgtacgtggagacagaatacaaaatcctccagaatagaagccata
                  HouseMouse  ggaaaaagaggggctgtgtaatgcatgtgcgtggagacaaaacacgaggtactccagaatagaagccata
            ChineseTreeShrew  ggaaaaagaagggctgtgtaatgcatgtacttggagacaaaacactaaatcttcaagaatagaagccata
                  RockPigeon  cgaaaaagatggactatgcaatgcttgtacgtggagacagaatacaaaatcttccagaatagaagccata
          TropicalClawedFrog  -gacaaagatacattgtgcagtgcttgtatctggagacagaacagtaaatctacaaggcttgaagctata
                      Alpaca  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcttcaagactagaagctata
           WildBactrianCamel  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcttcaagactagaagctata
                ArabianCamel  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcttcaagactagaagctata
                         Dog  ggaaaaggaggggctgtgtaatgcatgtatgtggaggcaaaacactaagtcttcaaggatagaagccata
                  Coelacanth  ggagcaggaaggacgatgtcctgcctgtgactgga---aagacgacagagcctttaggttggaatcgatt
                  MinkeWhale  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcctcaagactagaagccata
                 KillerWhale  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaatactaaatcctcaagactagaagccata
                  SpermWhale  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcctcaagactagaagccata
              ChacoanPeccary  ggaaaaagaggggctgtgtaatgcatgtatgtggagacaaaacactaaatcttcaagactagaagccata

                ARS_UCD_addY  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                      Rabbit  aagattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              GreenSeaTurtle  aaaattcaaatcctcagcaaacttcgtctggaacaagctcctaatattagcagggatactataaaacagc
                       Horse  aaaattcaaatcctcagtaaactgcgcctggaaacagctcctaacatcagcaaagatgctattagacaac
             ChinesePangolin  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaagacaac
                       Human  aagatacaaatcctcagtaaacttcgtctggaaacagctcctaacatcagcaaagatgttataagacaac
                    Aardvark  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                   BlueWhale  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
     CommonBottlenoseDolphin  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                 BelugaWhale  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagacgctataagacaac
                         Pig  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacattagcaaagatgctataagacaac
              FloridaManatee  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                     Tuatara  aaaattcagatccttagcaaactccgtctggaacaagctcctaatattagcagggatgctataaaccagc
                       Gayal  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
               AmericanBison  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                  LesserKudu  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                 CommonEland  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                     WildYak  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                 DomesticYak  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                 GreaterKudu  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                    Bushbuck  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                       Bongo  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                      Impala  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                        Suni  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatacgacaac
                Klipspringer  aaaatccaaatcctcagtaaacttcgcctggaaacagcgcctaacatcagcaaagatgctataagacaac
                WaterBuffalo  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
              AfricanBuffalo  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                   Sitatunga  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               MountainNyala  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                 NilgiriTahr  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                        ARS1  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                    WildGoat  aaaatccaaattctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                SiberianIbex  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              AlpineMuskDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
       ChineseForestMuskDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
            SiberianMuskDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                BlackMuntjac  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                MountainGoat  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                       Sheep  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
             EuropeanMouflon  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              AsiaticMouflon  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                   SnowSheep  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                BighornSheep  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                BarbarySheep  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                      Bharal  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               IndianMuntjac  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               ReevesMuntjac  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              PereDavidsDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
             WhiteLippedDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                 YarkandDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                     RedDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                     HogDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
             WhiteTailedDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaagacaac
                    MuleDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaagacaac
                    Reindeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaagacaac
              EasternRoeDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaagacaac
              WesternRoeDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaagacaac
                 EurasianElk  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctgtaaggcaac
            ChineseWaterDeer  aaaatccaaatcctcagtaagcttcgcctggaaacagctcctaacatcagcaaagatgctgtgagacaac
                       Okapi  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                     Giraffe  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                   Pronghorn  aaaatccaaatcctcagtaaactgcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               JavaMouseDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
             LesserMouseDeer  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                  ZebuCattle  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                        Gaur  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctatcagacaac
                    Steenbok  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
          PrzewalskisGazelle  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               RoyalAntelope  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                 KirksDikDik  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                      Herola  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              MaxwellsDuiker  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               HarveysDuiker  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctattagacaac
                       Oribi  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
             ThomsonsGazelle  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               GrantsGazelle  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                     Gerenuk  aagatccaaatcctcagcaagcttcgcctggaaacagctcctaacatcagcaaagatgcgataagacagc
                       Saiga  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                   Springbok  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               BohorReedbuck  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
            DefassaWaterbuck  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                      Lechwe  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                     Gemsbok  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
          ScimitarHornedOryx  aaaatccaaatcctcagtaaactgcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                RoanAntelope  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
               SableAntelope  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              BlueWildebeest  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                        Topi  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
         GreaterHorseshoeBat  aaaattcaaatcctcagtaaacttcgtctggaaacagctcccaacattagcaaagatgctataagacaac
     WesternEuropeanHedgehog  aaaattcaaatcctcagcaaactgcgtctggaaacagctccaaacatcagcaaagaagctataagacaac
                     chicken  aaaattcaaatcctcagcaaactgcggctggaacaagcacctaacattagcagggacgttattaaacagc
                MonkParakeet  aaaattcaaatcctcagcaaactgcgcctggaacaagctcctaatattagcagggatgttattaaacaac
                  HouseMouse  aaaattcaaatcctcagtaagctgcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
            ChineseTreeShrew  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                  RockPigeon  aagattcaaatcctcagcaaactgcgcctggaacaagctcctaacattagcagggatcttattaaacaac
          TropicalClawedFrog  aaaacccagatccttagcaaacttcgactggaacaggcacctaatattagcaaggatgctataaaacacc
                      Alpaca  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
           WildBactrianCamel  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                ArabianCamel  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                         Dog  aaaattcaaatcctcagcaaacttcgcctggaaacggctcccaacatcagcagagatgctgtcagacaac
                  Coelacanth  aaatcgcaaattctcagcaaactgcgtctagagcagcccccaaacattagtcgggataccgtcaaagagc
                  MinkeWhale  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                 KillerWhale  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
                  SpermWhale  aaaatccaaatcctcagtaaacttcgcctggaaacagctcctaacatcagcaaagatgctataagacaac
              ChacoanPeccary  aaaattcaaatcctcagtaaacttcgcctggaaacagctcctaacattagcaaagatgctataagacaac

                ARS_UCD_addY  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                      Rabbit  ttttacccaaagctcctccactccgggaactgattgatcagtacgacgttcagagggatgacagcagtga
              GreenSeaTurtle  ttttacccaaagctcctccattgcaagaactgattgatcagtatgacgtccagagagatgacagcagtga
                       Horse  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
             ChinesePangolin  ttttgcccaaagcgcccccactccgggaactgattgatcagtacgacgtccagagagatgacagcagtga
                       Human  ttttacccaaagctcctccactccgggaactgattgatcagtatgatgtccagagggatgacagcagcga
                    Aardvark  ttttacccaaagctccaccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                   BlueWhale  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
     CommonBottlenoseDolphin  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                 BelugaWhale  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                         Pig  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
              FloridaManatee  ttttacccaaagctccgccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                     Tuatara  ttttacccaaagctcctccacttcaggaactcattgatcagtatgatatccagagagatgacagcagtga
                       Gayal  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
               AmericanBison  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                  LesserKudu  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagggagatgccagcagtga
                 CommonEland  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagggagatgccagcagtga
                     WildYak  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                 DomesticYak  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                 GreaterKudu  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagggagatgccagcagtga
                    Bushbuck  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagggagatgccagcagtga
                       Bongo  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatatccagggagatgccagcagtga
                      Impala  ttttgcccaaggctcctccactccgggagctgattgatcagtacgatgtccagagagatgacagcagcga
                        Suni  ttttgcccaaggctcccccactccgggaactgattgatcagtacgacgtccagagagatgacagcagcga
                Klipspringer  ttttgcccagggctcctccactccgggaactgattgatcagtacgatgtccagcgagatgacagcagcga
                WaterBuffalo  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccggcagtga
              AfricanBuffalo  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                   Sitatunga  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagggagatgccagcagtga
               MountainNyala  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagggagatgccagcagtga
                 NilgiriTahr  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                        ARS1  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                    WildGoat  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                SiberianIbex  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
              AlpineMuskDeer  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
       ChineseForestMuskDeer  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
            SiberianMuskDeer  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                BlackMuntjac  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                MountainGoat  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                       Sheep  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
             EuropeanMouflon  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
              AsiaticMouflon  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                   SnowSheep  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                BighornSheep  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                BarbarySheep  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                      Bharal  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
               IndianMuntjac  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
               ReevesMuntjac  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
              PereDavidsDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
             WhiteLippedDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                 YarkandDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagggatgacagcagtga
                     RedDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagggatgacagcagtga
                     HogDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
             WhiteTailedDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                    MuleDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                    Reindeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgacgtccagagagatgacagcagtga
              EasternRoeDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
              WesternRoeDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                 EurasianElk  ttctgcccaaagctcctccattccaggaactgattgatcagtacgacgtccagagagatgacagcagcga
            ChineseWaterDeer  ttctgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                       Okapi  ttttgcccaaagctcccccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                     Giraffe  ttttgcccaaagctcccccactccgggaactgattgatcagtacgatatccagagagatgacagcagtga
                   Pronghorn  ttttgcccaaagctcccccgctccgggaactgatcgatcagtacgacgtccagagagatgacagcagtga
               JavaMouseDeer  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
             LesserMouseDeer  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                  ZebuCattle  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                        Gaur  ttttgcccaaggctcctccactcctggaactgattgatcagttcgatgtccagagagatgccagcagtga
                    Steenbok  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgttcagagagatgacagcagcga
          PrzewalskisGazelle  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
               RoyalAntelope  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                 KirksDikDik  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                      Herola  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
              MaxwellsDuiker  ttttgcccaaggctcctccactccgggaactgattgatgagtacgatgtccagcgagatgacagcagcga
               HarveysDuiker  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagggatgacagcagcga
                       Oribi  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
             ThomsonsGazelle  ttttgcccaaggctcctccactccgggaactgatcgatcagtacgacgtccagagagatgacagcagcga
               GrantsGazelle  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                     Gerenuk  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                       Saiga  ttctgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                   Springbok  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatatccagagagatgacagcagcga
               BohorReedbuck  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagggatgagagcagcga
            DefassaWaterbuck  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagggatgagagcagcga
                      Lechwe  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagggatgagagcagcga
                     Gemsbok  ttttgcccaaggctcctccactccgggaactaattgatcagtacgatgtccagagagatgacagcagcga
          ScimitarHornedOryx  ttttgcccaaggctcctccactccgggaactaattgatcagtacgatatccagagagatgacagcagcga
                RoanAntelope  ttttgcccaaggctcctccactccgggaactaattgatcagtacgatgtccagagggatgacagcagcga
               SableAntelope  ttttgcccaaggctcctccactccgggaactaattgatcagtacgatatccagagggatgacagcagcga
              BlueWildebeest  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
                        Topi  ttttgcccaaggctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagcga
         GreaterHorseshoeBat  ttttgcccaaagcccctccgctccgggaactgattgatcagtacgatgtccagcgagatgacagcagtga
     WesternEuropeanHedgehog  ttttgcccaaagctccaccgctccgggaactgattgatcagtacgacgtccagagagatgacagcagcga
                     chicken  ttttacccaaagctcctccactgcaggaactgattgatcagtatgatgtccagagggacgacagtagcga
                MonkParakeet  ttttacccaaagctcctccactccaggaactgattgatcagtatgacgtccagagagatgacagtagtga
                  HouseMouse  ttctgccaagagcgcctccactccgggaactgatcgatcagtacgacgtccagagggatgacagcagtga
            ChineseTreeShrew  ttttacccaaagctcctccactccgggaactgattgatcagtacgacgtccagagggatgacagcagtga
                  RockPigeon  ttttacccaaagctcctccgctacaggaattgattgatcagtatgacgtccagagagacgatagtagcga
          TropicalClawedFrog  ttttacccaaagcaccacctttacaagatttaatagacaaatatgatgttcaaaaagatgaaagcagtgc
                      Alpaca  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
           WildBactrianCamel  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                ArabianCamel  ttttgcccaaagctcctccgctccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                         Dog  tcttgccgcgggctcctccgctgcgggagctgatcgaccagtacgacgtccagagggatgacagcagcga
                  Coelacanth  tcctgcctaaagcacctccactgcaagaactgattgatcagtatgacgtccagaaggatgatagcaatga
                  MinkeWhale  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                 KillerWhale  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
                  SpermWhale  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga
              ChacoanPeccary  ttttgcccaaagctcctccactccgggaactgattgatcagtacgatgtccagagagatgacagcagtga

                ARS_UCD_addY  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                      Rabbit  tggctctttggaagatgacgattatcacgctacgacggaaacaatc-attactatgcctaccgagtgtaa
              GreenSeaTurtle  tggttctttggaagatgatgattatcatgctacaactgagactatt-attacaatgcctacagagtgtaa
                       Horse  tggctctttggaagatgatgattaccacgcgacgacggaaacaatc-attaccatgcctacagagtgtaa
             ChinesePangolin  gggctctctggaagacgacgactaccacgccacgacagaaacgatc-attactatgcccacagagtgtaa
                       Human  tggctctttggaagatgacgattatcacgctacaacggaaacaatc-attaccatgcctacagagtgtaa
                    Aardvark  tggttctttggaagatgatgattatcacgctacgacggaaacaatt-attacgatgcctacagagtgtaa
                   BlueWhale  cggctccttggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacagagtgtga
     CommonBottlenoseDolphin  cggctccttggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacagagtgtga
                 BelugaWhale  cggctccttggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacagagtgtga
                         Pig  tggctccttggaagatgatgattatcacgctacgacggaaacgatc-attaccatgcctacagagtgtaa
              FloridaManatee  tgggtctttggaagatgatgattatcacgctacgacagaaacaatt-attactatacctacagagtgtaa
                     Tuatara  tggttctttggaagatgatgattatcatgctacaactgaaaccatt-attacaatgcctacagaacgtaa
                       Gayal  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
               AmericanBison  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                  LesserKudu  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
                 CommonEland  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
                     WildYak  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                 DomesticYak  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                 GreaterKudu  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
                    Bushbuck  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
                       Bongo  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
                      Impala  cggctccttggaagacgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                        Suni  cggctccttggaagacgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                Klipspringer  tggctccttggaagatgatgactaccatgtcacgacggaaacggtc-attaccatgcccacggagtgtga
                WaterBuffalo  cggctccttggaagacgatgactaccacgccaggacggacgcggtc-attaccatgcccacggagtgtga
              AfricanBuffalo  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                   Sitatunga  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
               MountainNyala  cggctccttggaagacgatgattaccacgctaggacggaaacggtc-atcaccatgcccacggagtgtga
                 NilgiriTahr  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                        ARS1  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                    WildGoat  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                SiberianIbex  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
              AlpineMuskDeer  cggctccttggaagatgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
       ChineseForestMuskDeer  cggctccttggaagatgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
            SiberianMuskDeer  cggctccttggaagatgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                BlackMuntjac  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                MountainGoat  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                       Sheep  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
             EuropeanMouflon  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
              AsiaticMouflon  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                   SnowSheep  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                BighornSheep  cggctccttggaagacgatgactaccacgttacgacggaaacggtctattaccatgcccacggagtgtga
                BarbarySheep  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                      Bharal  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
               IndianMuntjac  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
               ReevesMuntjac  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
              PereDavidsDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
             WhiteLippedDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                 YarkandDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                     RedDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                     HogDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
             WhiteTailedDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-atcaccatgcccacggagtgtga
                    MuleDeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-atcaccatgcccacggagtgtga
                    Reindeer  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-atcaccatgcccacggagtgtga
              EasternRoeDeer  cggctccttggaagatgatgactaccacgctaggacggaaacggtc-attaccatgccctcggagtgtga
              WesternRoeDeer  cggctccttggaagatgatgactaccacgctaggacggaaacggtc-attaccatgccctcggagtgtga
                 EurasianElk  cggctccctggaggatgatgactaccacgctaggacggaaacggtc-cttatcatgcccacggagtgtga
            ChineseWaterDeer  ccgctccttggaagatgatgactaccacgctaggacggaaacggtc-attaccatgccctcggagtgtga
                       Okapi  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                     Giraffe  cggctccttggaagatgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                   Pronghorn  cggctccttggaagacgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
               JavaMouseDeer  cggctccctggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
             LesserMouseDeer  cggctccctggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
                  ZebuCattle  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                        Gaur  cggctccttggaagacgatgactaccacgccaggacggaaacggtc-attaccatgcccacggagtgtga
                    Steenbok  cggctccttagaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
          PrzewalskisGazelle  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attgccatgcccacagagtgtga
               RoyalAntelope  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                 KirksDikDik  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                      Herola  cggctccttggaagacgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
              MaxwellsDuiker  cggctctttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
               HarveysDuiker  cggctctttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                       Oribi  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
             ThomsonsGazelle  cggctccttggaagacgatgactaccacgtttcgacggagacagtc-atcaccatgcccacggagtgtga
               GrantsGazelle  cggctccttggaagacgatgactaccacgttacgacggaaacagtc-atcaccatgcccacggagtgtga
                     Gerenuk  cggctccttggaagacgatgactaccacgttacgacggaaacagtc-attaccatgcccacggagtgtga
                       Saiga  cggctccttggaagacgatgactaccacgttacgacggaaacagtc-attaccatgcccacagagtgtga
                   Springbok  cggctccttggaagacgatgactaccacgttacgacggaaacagtc-attaccatgcccacggagtgtga
               BohorReedbuck  cggctccttggaagacgatgactaccacgttacgaaggaaacggtc-atcaccatgcccacggagtgtga
            DefassaWaterbuck  cggctccttggaagacgatgactaccacgttacgaaggaaacggtc-atcaccatgcccacggagtgtga
                      Lechwe  cggctccttggaagacgatgactaccacgttacgaaggaaacggtc-atcaccatgcccacggagtgtga
                     Gemsbok  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
          ScimitarHornedOryx  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                RoanAntelope  cggctccttggaggacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
               SableAntelope  cggctccttggaggacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
              BlueWildebeest  cggctccttggaagacgatgactaccacgttacgacggaaacggtc-attaccatgcccacggagtgtga
                        Topi  cggctccttggaagacgatgactaccacgctacgacggaaacggtc-attaccatgcccacggagtgtga
         GreaterHorseshoeBat  tggctccttggaagatgatgattaccatgctacgacagaaacgatc-attaccatgcctacagagtgtaa
     WesternEuropeanHedgehog  tggctccttggaagatgatgattatcacgctacaacggagactatc-attaccatgcctacggagtgtaa
                     chicken  tggctctttggaagacgatgactatcatgccacaaccgagacgatt-atcacaatgcctacggagtgtaa
                MonkParakeet  tggctctttggaagacgatgactatcatgccaccaccgaaacgatt-atcacaatgcctacagagtgtaa
                  HouseMouse  tggctctttggaagatgacgattatcacgctaccacggaaacaatc-attaccatgcctacagagtgtaa
            ChineseTreeShrew  tggttctctggaagatgacgattatcatgctaccacggaaacgatc-attactatgcctacagagtgtaa
                  RockPigeon  tggctctttggaagacgatgactatcatgccaccaccgaaacgata-atcacaatgccgacggagtgtaa
          TropicalClawedFrog  tggtcatttggaagaggatgattatcatgtctctgctgaaactgtt-attataatgcctaccgagtgtaa
                      Alpaca  cggctccttggaagatgatgattaccacgctacgacggaaacgatc-attaccatgcctacagagtgtaa
           WildBactrianCamel  tggctccttggaagatgatgattaccacgctacgacggaaacaatc-attaccatgcctacagagtgtaa
                ArabianCamel  tggctccttggaagatgatgattaccacgctacgacggaaacaatc-attaccatgcctacagagtgtaa
                         Dog  cggctccctggaggacgacgactaccacgccaccaccgagacggtc-attgccatgcccgccgagagtga
                  Coelacanth  gggatctttggaagatgacgattaccatgccacaacagaaactgtt-attaccatggccacagagcgtaa
                  MinkeWhale  cggctccttggaagatgatgattaccacgctacaacggaaacggtc-attaccatgcccacagagtgtga
                 KillerWhale  cggctccttggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacagagtgtga
                  SpermWhale  cggctccttggaagatgatgattaccacgctacgacggaaacggtc-attaccatgcccacagagtgtga
              ChacoanPeccary  tggctccttggaagatgatgattatcacgctacgacggaaacgatc-attaccatgcctacagagtgtaa

                ARS_UCD_addY  gt---a
                      Rabbit  gt---a
              GreenSeaTurtle  gt---a
                       Horse  gt---a
             ChinesePangolin  gt---a
                       Human  gt---a
                    Aardvark  gt---a
                   BlueWhale  gt---a
     CommonBottlenoseDolphin  gt---a
                 BelugaWhale  gt---a
                         Pig  gt---a
              FloridaManatee  gt---a
                     Tuatara  gt---a
                       Gayal  gt---a
               AmericanBison  gt---a
                  LesserKudu  gt---a
                 CommonEland  gt---a
                     WildYak  gt---a
                 DomesticYak  gt---a
                 GreaterKudu  gt---a
                    Bushbuck  gt---a
                       Bongo  gt---a
                      Impala  gt---a
                        Suni  gt---a
                Klipspringer  gt---a
                WaterBuffalo  gt---a
              AfricanBuffalo  gt---a
                   Sitatunga  gt---a
               MountainNyala  gt---a
                 NilgiriTahr  gt---a
                        ARS1  gt---a
                    WildGoat  gt---a
                SiberianIbex  gt---a
              AlpineMuskDeer  gt---a
       ChineseForestMuskDeer  gt---a
            SiberianMuskDeer  gt---a
                BlackMuntjac  gt---a
                MountainGoat  gt---a
                       Sheep  gt---a
             EuropeanMouflon  gt---a
              AsiaticMouflon  gt---a
                   SnowSheep  gt---a
                BighornSheep  gt---a
                BarbarySheep  gt---a
                      Bharal  gt---a
               IndianMuntjac  gt---a
               ReevesMuntjac  gt---a
              PereDavidsDeer  gt---a
             WhiteLippedDeer  gt---a
                 YarkandDeer  gt---a
                     RedDeer  gt---a
                     HogDeer  gt---a
             WhiteTailedDeer  gt---a
                    MuleDeer  gt---a
                    Reindeer  gt---a
              EasternRoeDeer  gt---a
              WesternRoeDeer  gt---a
                 EurasianElk  gt---a
            ChineseWaterDeer  gt---a
                       Okapi  gt---a
                     Giraffe  gt---a
                   Pronghorn  gt---a
               JavaMouseDeer  gt---a
             LesserMouseDeer  gt---a
                  ZebuCattle  gt---a
                        Gaur  gt---a
                    Steenbok  gt---a
          PrzewalskisGazelle  gt---a
               RoyalAntelope  gt---a
                 KirksDikDik  gt---a
                      Herola  gt---a
              MaxwellsDuiker  gt---a
               HarveysDuiker  gt---a
                       Oribi  gt---a
             ThomsonsGazelle  gt---a
               GrantsGazelle  gt---a
                     Gerenuk  gt---a
                       Saiga  gt---a
                   Springbok  gt---a
               BohorReedbuck  gt---a
            DefassaWaterbuck  gt---a
                      Lechwe  gt---a
                     Gemsbok  gt---a
          ScimitarHornedOryx  gt---a
                RoanAntelope  gt---a
               SableAntelope  gt---a
              BlueWildebeest  gt---a
                        Topi  gt---a
         GreaterHorseshoeBat  gt---a
     WesternEuropeanHedgehog  gt---a
                     chicken  gtaaca
                MonkParakeet  gt---a
                  HouseMouse  gt---a
            ChineseTreeShrew  gt---a
                  RockPigeon  gt---a
          TropicalClawedFrog  gt---t
                      Alpaca  gt---a
           WildBactrianCamel  gt---a
                ArabianCamel  gt---a
                         Dog  gt---a
                  Coelacanth  gt---a
                  MinkeWhale  gt---a
                 KillerWhale  gt---a
                  SpermWhale  gt---a
              ChacoanPeccary  gt---a

Alignment block 6 of 179 in window, 6279377 - 6279378, 2 bps 
B D             ARS_UCD_addY  gt
                      Rabbit  gt
              GreenSeaTurtle  gt
                       Horse  gt
             ChinesePangolin  ga
                       Human  gt
                    Aardvark  gt
                   BlueWhale  gt
     CommonBottlenoseDolphin  gt
                 BelugaWhale  gt
                         Pig  gt
              FloridaManatee  at
                     Tuatara  gt
                       Gayal  gt
               AmericanBison  gt
                  LesserKudu  gt
                 CommonEland  gt
                     WildYak  gt
                 DomesticYak  gt
                 GreaterKudu  gt
                    Bushbuck  gt
                       Bongo  gt
                      Impala  gt
                        Suni  gt
                Klipspringer  gt
                WaterBuffalo  gt
              AfricanBuffalo  gt
                   Sitatunga  gt
               MountainNyala  gt
                 NilgiriTahr  gt
B D                     ARS1  gt
                    WildGoat  gt
                SiberianIbex  gt
              AlpineMuskDeer  gt
       ChineseForestMuskDeer  gt
            SiberianMuskDeer  gt
                BlackMuntjac  gc
                MountainGoat  gt
                       Sheep  gt
             EuropeanMouflon  gt
              AsiaticMouflon  gt
                   SnowSheep  gt
                BighornSheep  gt
                BarbarySheep  gt
                      Bharal  gt
               IndianMuntjac  gc
               ReevesMuntjac  gc
              PereDavidsDeer  gt
             WhiteLippedDeer  gt
                 YarkandDeer  gt
                     RedDeer  gt
                     HogDeer  gt
             WhiteTailedDeer  gt
                    MuleDeer  gt
                    Reindeer  gt
              EasternRoeDeer  gt
              WesternRoeDeer  gt
                 EurasianElk  gt
            ChineseWaterDeer  gt
                       Okapi  gt
                     Giraffe  gt
                   Pronghorn  gt
               JavaMouseDeer  gt
             LesserMouseDeer  gt
                  ZebuCattle  gt
                        Gaur  gt
                    Steenbok  gt
          PrzewalskisGazelle  gt
               RoyalAntelope  gt
                 KirksDikDik  gt
                      Herola  gt
              MaxwellsDuiker  gt
               HarveysDuiker  gt
                       Oribi  gt
             ThomsonsGazelle  gt
               GrantsGazelle  gt
                     Gerenuk  gt
                       Saiga  gt
                   Springbok  gt
               BohorReedbuck  gt
            DefassaWaterbuck  gt
                      Lechwe  gt
                     Gemsbok  gt
          ScimitarHornedOryx  gt
                RoanAntelope  gt
               SableAntelope  gt
              BlueWildebeest  gt
                        Topi  gt
         GreaterHorseshoeBat  gt
     WesternEuropeanHedgehog  gt
B                    chicken  ac
                MonkParakeet  ac
                  HouseMouse  ta
            ChineseTreeShrew  gt
                  RockPigeon  ac
          TropicalClawedFrog  gt
                      Alpaca  gt
           WildBactrianCamel  gt
                ArabianCamel  gt
                         Dog  gc
                  MinkeWhale  gt
                 KillerWhale  gt
                  SpermWhale  gt
              ChacoanPeccary  gt

Alignment block 7 of 179 in window, 6279379 - 6279385, 7 bps 
B D             ARS_UCD_addY  cctgctg
                      Rabbit  cctatta
              GreenSeaTurtle  cctgcta
                       Horse  cctgtta
             ChinesePangolin  actgcta
                       Human  cctatta
                    Aardvark  cttatta
                   BlueWhale  cctatta
     CommonBottlenoseDolphin  cctatta
                 BelugaWhale  cctatta
                         Pig  cctatta
              FloridaManatee  cctgtta
                     Tuatara  cctgcta
                       Gayal  cctgctg
               AmericanBison  cctgctg
                  LesserKudu  cctgctg
                 CommonEland  cctgctg
                     WildYak  cttgctg
                 DomesticYak  cctgctg
                 GreaterKudu  cctgctg
                    Bushbuck  cctgctg
                       Bongo  cctgctg
                      Impala  tctgcta
                        Suni  tctgcta
                Klipspringer  tctgctg
                WaterBuffalo  cctgctg
              AfricanBuffalo  cctgctg
                   Sitatunga  cctgctg
               MountainNyala  cctgctg
                 NilgiriTahr  tctgcta
B D                     ARS1  tctgcta
                    WildGoat  tctgcta
                SiberianIbex  tctgcta
              AlpineMuskDeer  cctg-ta
       ChineseForestMuskDeer  cctg-ta
            SiberianMuskDeer  cctg-ta
                BlackMuntjac  cttgcta
                MountainGoat  tctgcta
                       Sheep  tctgcta
             EuropeanMouflon  tctgcta
              AsiaticMouflon  tctgcta
                   SnowSheep  tctgcta
                BighornSheep  tctgcta
                BarbarySheep  tctgcta
                      Bharal  tctgcta
               IndianMuntjac  cttgcta
               ReevesMuntjac  cttgcta
              PereDavidsDeer  cctgcta
             WhiteLippedDeer  cctgcta
                 YarkandDeer  cctgcta
                     RedDeer  cctgcta
                     HogDeer  cctgcta
             WhiteTailedDeer  cctgcta
                    MuleDeer  cctgcta
                    Reindeer  cctgcta
              EasternRoeDeer  cctgcga
              WesternRoeDeer  cctgcga
                 EurasianElk  cctgcta
            ChineseWaterDeer  cctgcga
                       Okapi  cctatta
                     Giraffe  cctatta
                   Pronghorn  cctgctc
               JavaMouseDeer  cctgtta
             LesserMouseDeer  cctgtta
                  ZebuCattle  cctgctg
                        Gaur  cctgctg
                    Steenbok  tctgcta
          PrzewalskisGazelle  tctgcta
               RoyalAntelope  tctgctg
                 KirksDikDik  tctgcta
                      Herola  tctgcta
              MaxwellsDuiker  tctgctg
               HarveysDuiker  tctgctg
                       Oribi  tctgcta
             ThomsonsGazelle  tctgcta
               GrantsGazelle  tctgcta
                     Gerenuk  tctgcta
                       Saiga  tctgcta
                   Springbok  tctgcta
               BohorReedbuck  tctgcta
            DefassaWaterbuck  tctgcta
                      Lechwe  tctgcta
                     Gemsbok  tctgctg
          ScimitarHornedOryx  tctgctg
                RoanAntelope  tctgctg
               SableAntelope  tctgctg
              BlueWildebeest  tctccta
                        Topi  tctgcta
         GreaterHorseshoeBat  cctatta
     WesternEuropeanHedgehog  cctatga
B                    chicken  cctgctg
                MonkParakeet  cctgctg
                  HouseMouse  tctgtta
            ChineseTreeShrew  cctgtta
                  RockPigeon  cccactg
                      Alpaca  cctatta
           WildBactrianCamel  cctatta
                ArabianCamel  cctatta
                         Dog  ----tgg
                  MinkeWhale  cctatta
                 KillerWhale  cctatta
                  SpermWhale  cctatta
              ChacoanPeccary  cctatta

Alignment block 8 of 179 in window, 6279386 - 6279424, 39 bps 
B D             ARS_UCD_addY  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                      Rabbit  g--tgt-atgtca-acagttctgct--g----actgttgttctagtgtt
              GreenSeaTurtle  c--tttaatatcacactattctact--gataaacagttgtcctagtgct
                       Horse  g--tgt-atatca-acaattctgct--g----actgttgttctagtgtt
             ChinesePangolin  g--tgt-atat----cgattctgct--g----actgttgttctagtgtt
                       Human  g--tgt-atatca-acagttctgct--g----actgttgttctagtgtt
                    Aardvark  ---tgt-atatcg-gcagttctgct--g----actgttgttctagtgtt
                   BlueWhale  g--tgt-agagca-acagttctgct--g----actgctgttctagtgtt
     CommonBottlenoseDolphin  g--tgt-agagca-acagttctgct--g----actgttgttctagtgtt
                 BelugaWhale  g--tgt-agagca-acagttctgct--g----actgttgttctagtgtt
                         Pig  g--tgt-atatca-acaattctgct--g----actgttgttccagtgtt
              FloridaManatee  c---gt-atatca-gcaattctgct--g----actgttgttctaatgtt
                     Tuatara  ctttat-atgcca--ctattctact--gacaaacagttgtcttagtgct
                       Gayal  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
               AmericanBison  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                  LesserKudu  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                 CommonEland  g--tgc-agagca-acgactctgct--g----actgctgttctagcgtt
                     WildYak  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                 DomesticYak  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                 GreaterKudu  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                    Bushbuck  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                       Bongo  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                      Impala  g--cgc-agagcg-acgactctgct--g----actgctgtgctagtgtt
                        Suni  g--tgc-agagcc-acgactctgct--g----actgctgttctggtgct
                Klipspringer  g--tgc-agggca-gcggctctgcc--g----actgctgttctagtgtt
                WaterBuffalo  g--tgc-ggagca-gcggctctgct--g----gccgctgttctagtgtt
              AfricanBuffalo  g--tgc-agagca-gcgactctgct--g----actgctgttctagtgtt
                   Sitatunga  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
               MountainNyala  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                 NilgiriTahr  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
B D                     ARS1  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                    WildGoat  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                SiberianIbex  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
              AlpineMuskDeer  g--tgc-agagca-gcggttctgct--g----actgctgttctagtgtt
       ChineseForestMuskDeer  g--tgc-agagca-gcggttctgct--g----actgctgttctagtgtt
            SiberianMuskDeer  g--tgc-agagca-gcggttctgct--g----actgctgttctagtgtt
                BlackMuntjac  g--tgc-agagcg-acgattctgct--g----actgttgttctagtgtt
                MountainGoat  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                       Sheep  g--ggc-agagca-acgactctgct--g----actgctgttctagtgtt
             EuropeanMouflon  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
              AsiaticMouflon  g--ggc-agagca-acgactctgct--g----actgctgttctagtgtt
                   SnowSheep  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                BighornSheep  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                BarbarySheep  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                      Bharal  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
               IndianMuntjac  g--tgc-agagcg-acgattctgct--g----actgttgttctagtgtt
               ReevesMuntjac  g--tgc-agagcg-acgattctgct--g----actgttgttctagtgtt
              PereDavidsDeer  g--tgc-agagcg-acgattctgct--g----actgttgttctagtgtt
             WhiteLippedDeer  g--cgc-agagcg-acgattctgct--g----actgttgttctagtgtt
                 YarkandDeer  g--cgc-agagcg-acgattctgct--g----actgttgttctagtgtt
                     RedDeer  g--cgc-agagcg-acgattctgct--g----actgttgttctagtgtt
                     HogDeer  g--tgc-agagcg-acgattctgct--g----actgttgttctagtgtt
             WhiteTailedDeer  g--ggc-agagcc-acgattctgct--g----actgttgctctagtgtt
                    MuleDeer  g--ggc-agagcc-acgattctgct--g----actgttgttctagtgtt
                    Reindeer  g--ggc-tgagcc-acgattctgct--g----actgttgttctagtgtt
              EasternRoeDeer  g--tgc-agagcc-acgattctgct--g----actgttgttctagtgct
              WesternRoeDeer  g--tgc-agagcc-acgattctgct--g----actgttgttctagtgct
                 EurasianElk  g--cgc-ggagcc-ccgattctgct--g----actgttgctctagtgtt
            ChineseWaterDeer  g--tgc-agggcc-acgattctgct--g----actgttgttctagtgtt
                       Okapi  g--tgc-agagca-acgattctgct--g----actgttgttctagtgtt
                     Giraffe  g--tgc-agagca-acgattctgct--g----actgttgttctagtgtt
                   Pronghorn  g--cgc-agagcc-acggttctgct--g----actgccgttctagtgtt
               JavaMouseDeer  g--tgc-agagca-acgattctgct--g----acggttgttctagtgtt
             LesserMouseDeer  g--tgc-agagca-acgattctgct--g----acggttgttctagtgtt
                  ZebuCattle  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                        Gaur  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                    Steenbok  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
          PrzewalskisGazelle  g--tgc-agagcc-acgactctgct--g----actgctgttctagtgtt
               RoyalAntelope  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                 KirksDikDik  g--tgc-agagca-ccgactctgct--g----actgctgttctagtgtt
                      Herola  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
              MaxwellsDuiker  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
               HarveysDuiker  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                       Oribi  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
             ThomsonsGazelle  g--tgc-agagca-gagactctgct--g----accgctgctctggtgct
               GrantsGazelle  g--tgc-agagca-gcgactctgct--g----actgctgctctagtgct
                     Gerenuk  g--tgc-agagca-gcgactctgct--g----actgctgttctagtgtt
                       Saiga  g--tgc-agagca-gcgactctgct--g----actgctgctctagtgct
                   Springbok  g--tgc-agagca-gcgactctgct--g----actgctgttctagtgct
               BohorReedbuck  g--tgc-agagca-acggctctgct--g----acggctgttctagtgtt
            DefassaWaterbuck  g--tgc-agagca-acggctctgct--g----acggctgttctagtgtt
                      Lechwe  g--tgc-agagca-acggctctgct--g----acggctgttctagtgtt
                     Gemsbok  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
          ScimitarHornedOryx  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                RoanAntelope  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
               SableAntelope  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
              BlueWildebeest  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
                        Topi  g--tgc-agagca-acgactctgct--g----actgctgttctagtgtt
         GreaterHorseshoeBat  ----gt-atagca-acaattctgcc--g----ac---cggtctagtgtt
     WesternEuropeanHedgehog  ----gt-atatca-acaattctgct--g----actgttgttctagtgtt
B                    chicken  t--cgt-ctcgca-ccgctcct-ct--g----agagttgtctctgtgct
                MonkParakeet  t--cgc-ctccca-ccactcct-ccgag----agagttctctctctgct
                  HouseMouse  a--agt-atatca-acagttctgct--g----actgctgtcctagtgtt
            ChineseTreeShrew  g--tgt-atatca-acagttctgct--g----actgttggtctagtgtt
                      Alpaca  g--tgt-atatca-acaattctgct--g----actgttgttccagtgtt
           WildBactrianCamel  g--tgt-atatca-acaattctgct--g----actgttgttctagtgtt
                ArabianCamel  g--tgt-atatca-acaattctgct--g----actgttgttctagtgtt
                         Dog  g--tgt-gtggc-----------------------gcggggctcgtgtc
                  MinkeWhale  g--tgt-agagca-acagttctgct--g----actgctgttctagtgtt
                 KillerWhale  g--tgt-agagcg-acagttctgct--g----actgttgttctagtgtt
                  SpermWhale  g--tgt-agagca-acagttctgct--g----actgttgttctagtgtt
              ChacoanPeccary  g--tgt-atatca-acaattctgct--g----actgttgttccagtgtt

Alignment block 9 of 179 in window, 6279425 - 6279497, 73 bps 
B D             ARS_UCD_addY  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                      Rabbit  tatgggaaacagatct-attttcaggctctttt-aataagctgtcagct--t--ttatgt-aagaagcag
              GreenSeaTurtle  taagagcaacaaatct-tgtctcagtctcttct-aacaggctgctggca--gaagtatgt-aagagggag
                       Horse  tatgagaaacagatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagcaggaa
             ChinesePangolin  tatgagaaacatatct-actttcaggctctttt-aacaagctgctagct--t--ttatgt-aagtaggaa
                       Human  tatgagaaacagatct-attttcaggctcttttaaacaagctgttggcc--t--gtatgt-aagtagaaa
                    Aardvark  tatgagaaacagatca-attttcaggctctttt-aacaagctgttggct--t--gtatat-aagcag-ga
                   BlueWhale  tatgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag
     CommonBottlenoseDolphin  tatgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag
                 BelugaWhale  tatgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtattt-aagtaggag
                         Pig  tatgagaaacagatct-attttcaggctctttt-aacaagctgttggct--t--gtacgt-aagtaggag
              FloridaManatee  tatgagaaacagatct-attctcaggctcttta-aacaagctgttggct--t--gtatgt-aagcagaag
                     Tuatara  taagggcaacagg---------cagtctcttct-aacaagatgctggct--gaagtctgg-aagagggag
                       Gayal  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
               AmericanBison  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                  LesserKudu  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                 CommonEland  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                     WildYak  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                 DomesticYak  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                 GreaterKudu  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                    Bushbuck  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                      Impala  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-gaggaggag
                        Suni  catgagaaaccgatct-attttcaggcactttt-aacaagctgctggct--t--gtacgt-gaggaggag
                Klipspringer  catgagaaaccgatct-attttcaggctctttt-aacaggctgctggct--t--gcacgt-aaggaggag
                WaterBuffalo  catgagaaaccggtct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
              AfricanBuffalo  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                   Sitatunga  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
               MountainNyala  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                 NilgiriTahr  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
B D                     ARS1  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                    WildGoat  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                SiberianIbex  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
              AlpineMuskDeer  tatgagaaaccgatct-attttcagtctctttt-aacaagctgctggct--t--gtatgt-acgtaggag
       ChineseForestMuskDeer  tatgagaaaccgatct-attttcagtctctttt-aacaagctgctggct--t--gtatgt-acgtaggag
            SiberianMuskDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagtaggag
                BlackMuntjac  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t---tatgt-aagcagagg
                MountainGoat  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                       Sheep  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
             EuropeanMouflon  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
              AsiaticMouflon  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                   SnowSheep  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                BighornSheep  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                BarbarySheep  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                      Bharal  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
               IndianMuntjac  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
               ReevesMuntjac  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aagcaggag
              PereDavidsDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
             WhiteLippedDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
                 YarkandDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
                     RedDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
                     HogDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
             WhiteTailedDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gcatgt-aagcaggag
                    MuleDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gcatgt-aagcaggag
                    Reindeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gcatgt-aagcaggag
              EasternRoeDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtgtgt-aagcaggag
              WesternRoeDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtgtgt-aagcaggag
                 EurasianElk  tatgagaaaccgatct-attttcaggctctttc-aacaagctgctggct--t--gtatgt-aagcaggag
            ChineseWaterDeer  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagcaggag
                       Okapi  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagtaggag
                     Giraffe  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagtaggag
                   Pronghorn  tatgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aagtaggag
               JavaMouseDeer  catgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtctgt-aagtaggag
             LesserMouseDeer  catgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtctgt-aagtaggag
                  ZebuCattle  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                        Gaur  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtatgt-aaggaggag
                    Steenbok  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
          PrzewalskisGazelle  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
               RoyalAntelope  catgagaaaccgatct-attttcaggttctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                 KirksDikDik  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
                      Herola  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
              MaxwellsDuiker  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
               HarveysDuiker  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                       Oribi  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtctgt-aaggaagag
             ThomsonsGazelle  catgagaagccgatct-attttcaggctctttt-aacaagctgccggct--t--gtccgt-aaggaggag
               GrantsGazelle  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
                     Gerenuk  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
                       Saiga  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
                   Springbok  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtccgt-aaggaggag
               BohorReedbuck  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gcacgt-aaggaggag
            DefassaWaterbuck  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gcacgt-aaggaggag
                      Lechwe  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gcacgt-aaggaggag
                     Gemsbok  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
          ScimitarHornedOryx  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                RoanAntelope  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
               SableAntelope  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
              BlueWildebeest  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacgt-aaggaggag
                        Topi  catgagaaaccgatct-attttcaggctctttt-aacaagctgctggct--t--gtacat-aaggaggag
         GreaterHorseshoeBat  tatgagaaacagatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag
     WesternEuropeanHedgehog  tacgagaaacagatct-attttcaggctctttt-aacaagctgttggct--a--ctatataaagtaggag
B                    chicken  gtagagcctcacaactccttctcaggctctccc-aacaggctgctggctgga--gtctgc-cggagggag
                MonkParakeet  gtagagccactcaactcctcctcgggctctccc-aacaggctgctggctgaa--gtctgc-tggagggag
                  HouseMouse  tatgagaaacagatct-attttcagg--ctttt-aacaagctgttggct--t--atatgt-aagtagcag
            ChineseTreeShrew  tatgagaaacagatct-attttcaggctctttt-aacaagctgttggct--t--gtatat-agataggag
                      Alpaca  tatgagaaacagatct-attttcaggctctttt-aacaggctgttcgcg--t--gtatgt-aagtaggag
           WildBactrianCamel  tatgagaaacagatct-attttcaggctctttt-aacaggctgttcgtg--t--gtatgt-aagtaggag
                ArabianCamel  tatgagaaacagatct-attttcaggctctttt-aacaggctgttcgtg--t--gtatgt-aagtaggag
                         Dog  ggtggcagctgg--------tccgggctccctt-cccaggccgccgccg--t--g--tgg-gagtgggaa
                  MinkeWhale  tatgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag
                 KillerWhale  tatgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag
                  SpermWhale  tatgagaaaccgatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag
              ChacoanPeccary  tatgagaaacagatct-attttcaggctctttt-aacaagctgttggct--t--gtatgt-aagtaggag

                ARS_UCD_addY  gg-gaaaga-gc------
                      Rabbit  ga-aagaca-gtctc--t
              GreenSeaTurtle  gg-agaaga-acata--t
                       Horse  gg-aaaaga-gtttc--t
             ChinesePangolin  gg-aaaaga-gtttc--t
                       Human  gg-aaaaga-gtttc--t
                    Aardvark  gg-aaaggt-ttttt--t
                   BlueWhale  gg-aaaaga-gtttcttt
     CommonBottlenoseDolphin  gg-aaaaga-gtttc-tt
                 BelugaWhale  gg-aaaaga-gtttc-tt
                         Pig  gg-aaaaga-gtttc---
              FloridaManatee  ga-aagggt-ttctt--t
                     Tuatara  gg-agaaga-gtata--t
                       Gayal  gg-gaaaga-gc------
               AmericanBison  gg-gagaga-gc------
                  LesserKudu  gg-gaaaga-gc------
                 CommonEland  gg-gaaaga-gc------
                     WildYak  gg-gaaaga-gc------
                 DomesticYak  gg-gaaaga-gc------
                 GreaterKudu  gg-gaaaga-gc------
                    Bushbuck  gg-gaaaga-gc------
                      Impala  gg-caaaga-gc------
                        Suni  gg-caaaga-gc------
                Klipspringer  gg-caaagc-tc------
                WaterBuffalo  gg-gaaaga-gc------
              AfricanBuffalo  gg-gaaaga-gc------
                   Sitatunga  gg-gaaaga-gc------
               MountainNyala  gg-gaaaga-gc------
                 NilgiriTahr  gg-caaaga-gc------
                        ARS1  gg-caaaga-gc------
                    WildGoat  gg-caaaga-gc------
                SiberianIbex  gg-caaaga-gc------
              AlpineMuskDeer  gg--aaaga-gc------
       ChineseForestMuskDeer  gg--aaaga-gc------
            SiberianMuskDeer  gg--aaaga-gc------
                BlackMuntjac  ga--aaaga-gc------
                MountainGoat  gg-caaaga-gc------
                       Sheep  gg-caaaga-gc------
             EuropeanMouflon  gg-caaaga-gc------
              AsiaticMouflon  gg-caaaga-gc------
                   SnowSheep  gg-caaaga-gc------
                BighornSheep  gg-caaaga-gc------
                BarbarySheep  gg-caaaga-gc------
                      Bharal  gg-caaaga-gc------
               IndianMuntjac  gg-aaaaga-gc------
               ReevesMuntjac  gg-aaaaga-gc------
              PereDavidsDeer  gg-aaaaga-gc------
             WhiteLippedDeer  ggaaaaaga-gc------
                 YarkandDeer  ggaaaaaga-gc------
                     RedDeer  ggaaaaaga-gc------
                     HogDeer  gg-aaaaga-gc------
             WhiteTailedDeer  gg-aaaaga-gc------
                    MuleDeer  gg-aaaaga-gc------
                    Reindeer  gg-aaaaga-gc------
              EasternRoeDeer  gg-aaaaga-gc------
              WesternRoeDeer  gg-aaaaga-gc------
                 EurasianElk  gg-aaaaga-gc------
            ChineseWaterDeer  gg-aaaaga-gc------
                       Okapi  gg-aaaaga-gc------
                     Giraffe  gg-aaaaga-gc------
                   Pronghorn  gg-aaaaga-gc------
               JavaMouseDeer  gg-aaaaaaggt------
             LesserMouseDeer  gg-aaaaaaggt------
                  ZebuCattle  gg-gaaaga-gc------
                        Gaur  gg-gaaaga-gc------
                    Steenbok  gg-caaaga-gc------
          PrzewalskisGazelle  gg-caaaga-gc------
               RoyalAntelope  gg-caaaga-gc------
                 KirksDikDik  gg-caaaga-gc------
                      Herola  gg-caaaga-gc------
              MaxwellsDuiker  gg-caaaga-gc------
               HarveysDuiker  gg-caaaga-gc------
                       Oribi  gg-caaaga-gc------
             ThomsonsGazelle  gg-caagga-gc------
               GrantsGazelle  gg-caaaga-gc------
                     Gerenuk  gg-caaaga-gc------
                       Saiga  gg-caaaga-gc------
                   Springbok  gg-cataga-gc------
               BohorReedbuck  gg-caaaga-gc------
            DefassaWaterbuck  gg-caaaga-gc------
                      Lechwe  gg-caaaga-gc------
                     Gemsbok  gg-caaaga-gc------
          ScimitarHornedOryx  gg-caaaga-gc------
                RoanAntelope  gg-caaaga-gc------
               SableAntelope  gg-caaaga-gc------
              BlueWildebeest  gg-caaaga-gc------
                        Topi  gg-caaaga-gc------
         GreaterHorseshoeBat  gg-aaaaga-gg------
     WesternEuropeanHedgehog  gg-gaaa-a-gc------
                     chicken  gg-aggaga-g-------
                MonkParakeet  gg-aggaga-g-------
                  HouseMouse  ag-aaagga-ga------
            ChineseTreeShrew  ga-aaaaga-gt------
                      Alpaca  gg-aaaaga-gt------
           WildBactrianCamel  gg-aaaaga-gt------
                ArabianCamel  gg-aaaaga-gt------
                         Dog  gg---agga-tc------
                  MinkeWhale  gg-aaaaga-gt------
                 KillerWhale  gg-aaaaga-gt------
                  SpermWhale  gg-aaaaga-gt------
              ChacoanPeccary  gg-aaaaga-gt------

Alignment block 10 of 179 in window, 6279498 - 6279503, 6 bps 
B D             ARS_UCD_addY  tt---------t--tt--------t
                      Rabbit  tc---------t--tt--------t
              GreenSeaTurtle  tt---------t--ta---------
                       Horse  tt---------t--tt--------t
             ChinesePangolin  tt---------t--tc--------c
                       Human  ct---------t--tt--------t
                    Aardvark  tt---------t--ttttttttggt
                   BlueWhale  tt---------t--tt--------t
     CommonBottlenoseDolphin  tt---------t--tt--------t
                 BelugaWhale  tt---------t--tt--------t
                         Pig  tt---------t--tt--------t
              FloridaManatee  tt---------t--tt--------t
                     Tuatara  tt---------t-------------
                       Gayal  tt---------t--tt--------t
               AmericanBison  tt---------t--tt--------t
                  LesserKudu  tt---------t--tt--------t
                 CommonEland  tt---------t--tt--------t
                     WildYak  tt---------t--tt--------t
                 DomesticYak  tt---------t--tt--------t
                 GreaterKudu  tt---------t--tt--------t
                    Bushbuck  tt---------t--tt--------t
                       Bongo  tt---------t--tt--------t
                      Impala  tt---------t--tt--------t
                        Suni  tt---------t--tt--------t
                Klipspringer  tt---------t--tt--------t
                WaterBuffalo  tt---------t--tt--------t
              AfricanBuffalo  tt---------t--tt--------t
                   Sitatunga  tt---------t--tt--------t
               MountainNyala  tt---------t--tt--------t
                 NilgiriTahr  tt---------t--tt--------g
B D                     ARS1  tt---------t--tt--------g
                    WildGoat  tt---------t--tt--------g
                SiberianIbex  tt---------t--tt--------g
              AlpineMuskDeer  tt---------t--tt--------t
       ChineseForestMuskDeer  tt---------t--tt--------t
            SiberianMuskDeer  tt---------t--tt--------t
                BlackMuntjac  tt---------c--tt--------t
                MountainGoat  tt---------t--tt--------g
                       Sheep  tt---------t--tt--------g
             EuropeanMouflon  tt---------t--tt--------g
              AsiaticMouflon  tt---------t--tt--------g
                   SnowSheep  tt---------t--tt--------g
                BighornSheep  tt---------t--tt--------g
                BarbarySheep  tt---------t--tt--------g
                      Bharal  tt---------t--tt--------g
               IndianMuntjac  tt---------c--tt--------t
               ReevesMuntjac  tt---------c--tt--------t
              PereDavidsDeer  tt---------c--tt--------t
             WhiteLippedDeer  tt---------c--tt--------t
                 YarkandDeer  tt---------c--tt--------t
                     RedDeer  tt---------c--tt--------t
                     HogDeer  tt---------c--tt--------t
             WhiteTailedDeer  tt---------c--tt--------t
                    MuleDeer  tt---------c--tt--------t
                    Reindeer  tt---------c--tt--------t
              EasternRoeDeer  tt---------c--tt--------t
              WesternRoeDeer  tt---------c--tt--------t
                 EurasianElk  tt---------c--tt--------t
            ChineseWaterDeer  tt---------c--tt--------t
                       Okapi  tt---------t--tt--------t
                     Giraffe  tt---------t--tt--------t
                   Pronghorn  tt---------t--tc--------t
               JavaMouseDeer  tt---------t--tt--------t
             LesserMouseDeer  tt---------t--tt--------t
                  ZebuCattle  tt---------t--tt--------t
                        Gaur  tt---------t--tt--------t
                    Steenbok  tt---------t--tt--------t
          PrzewalskisGazelle  tt---------t--tc--------t
               RoyalAntelope  tt---------t--tt--------t
                 KirksDikDik  tt---------t--tt--------t
                      Herola  tt---------t--tt--------g
              MaxwellsDuiker  tt---------t--tt--------t
               HarveysDuiker  tt---------t--tt--------t
                       Oribi  tt---------t--tt--------t
             ThomsonsGazelle  tt---------t--tt--------t
               GrantsGazelle  tt---------t--tt--------t
                     Gerenuk  tt---------t--tt--------t
                       Saiga  tt---------t--tt--------t
                   Springbok  tt---------t--tt--------t
               BohorReedbuck  -t---------t--tt--------t
            DefassaWaterbuck  tt---------t--tt---------
                      Lechwe  tt---------t--tt---------
                     Gemsbok  tt---------t--tt--------g
          ScimitarHornedOryx  tt---------t--tt--------g
                RoanAntelope  tt---------t--tt--------g
               SableAntelope  tt---------t--tt--------g
              BlueWildebeest  tt---------t--tt--------g
                        Topi  tt---------t--tt--------g
         GreaterHorseshoeBat  tt---------t--gt--------t
     WesternEuropeanHedgehog  ttcccacctccc--ag--------c
B                    chicken  -----------t--gt--------a
                MonkParakeet  -----------c--at--------t
                  HouseMouse  tt---------t--tt--------t
            ChineseTreeShrew  tt---------c--tt--------t
                      Alpaca  tt---------c--tt--------t
           WildBactrianCamel  tt---------c--at--------t
                ArabianCamel  tt---------c--at--------t
                         Dog  tc---------t--gt--------c
                  MinkeWhale  tt---------ctttt--------t
                 KillerWhale  tt---------ctttt--------t
                  SpermWhale  tt---------ctttt--------t
              ChacoanPeccary  tt---------c--tt--------t

Alignment block 11 of 179 in window, 6279504 - 6279504, 1 bps 
B D             ARS_UCD_addY  c
                      Rabbit  c
                       Horse  c
             ChinesePangolin  c
                       Human  c
                    Aardvark  c
                   BlueWhale  c
     CommonBottlenoseDolphin  c
                 BelugaWhale  c
                         Pig  c
              FloridaManatee  c
                       Gayal  c
               AmericanBison  c
                  LesserKudu  c
                 CommonEland  c
                     WildYak  c
                 DomesticYak  c
                 GreaterKudu  c
                    Bushbuck  c
                       Bongo  c
                      Impala  c
                        Suni  c
                Klipspringer  c
                WaterBuffalo  c
              AfricanBuffalo  c
                   Sitatunga  c
               MountainNyala  c
                 NilgiriTahr  c
B D                     ARS1  c
                    WildGoat  c
                SiberianIbex  c
              AlpineMuskDeer  c
       ChineseForestMuskDeer  c
            SiberianMuskDeer  c
                BlackMuntjac  c
                MountainGoat  c
                       Sheep  c
             EuropeanMouflon  c
              AsiaticMouflon  c
                   SnowSheep  c
                BighornSheep  c
                BarbarySheep  c
                      Bharal  c
               IndianMuntjac  c
               ReevesMuntjac  c
              PereDavidsDeer  c
             WhiteLippedDeer  c
                 YarkandDeer  c
                     RedDeer  c
                     HogDeer  c
             WhiteTailedDeer  c
                    MuleDeer  c
                    Reindeer  c
              EasternRoeDeer  c
              WesternRoeDeer  c
                 EurasianElk  c
            ChineseWaterDeer  c
                       Okapi  c
                     Giraffe  c
                   Pronghorn  c
               JavaMouseDeer  c
             LesserMouseDeer  c
                  ZebuCattle  c
                        Gaur  c
                    Steenbok  t
          PrzewalskisGazelle  c
               RoyalAntelope  c
                 KirksDikDik  c
                      Herola  c
              MaxwellsDuiker  c
               HarveysDuiker  c
                       Oribi  c
             ThomsonsGazelle  c
               GrantsGazelle  c
                     Gerenuk  c
                       Saiga  c
                   Springbok  c
               BohorReedbuck  c
            DefassaWaterbuck  c
                      Lechwe  c
                     Gemsbok  c
          ScimitarHornedOryx  c
                RoanAntelope  c
               SableAntelope  c
              BlueWildebeest  c
                        Topi  c
         GreaterHorseshoeBat  c
     WesternEuropeanHedgehog  c
B                    chicken  c
                  HouseMouse  c
            ChineseTreeShrew  a
                      Alpaca  c
           WildBactrianCamel  c
                ArabianCamel  c
                         Dog  c
                  MinkeWhale  c
                 KillerWhale  c
                  SpermWhale  c
              ChacoanPeccary  c

Alignment block 12 of 179 in window, 6279505 - 6279506, 2 bps 
B D             ARS_UCD_addY  aa
                      Rabbit  aa
                       Horse  aa
             ChinesePangolin  ag
                       Human  aa
                    Aardvark  ta
                   BlueWhale  aa
     CommonBottlenoseDolphin  ga
                 BelugaWhale  aa
                         Pig  aa
              FloridaManatee  aa
                     Tuatara  aa
                       Gayal  aa
               AmericanBison  aa
                  LesserKudu  aa
                 CommonEland  aa
                     WildYak  aa
                 DomesticYak  aa
                 GreaterKudu  aa
                    Bushbuck  aa
                       Bongo  aa
                      Impala  aa
                        Suni  aa
                Klipspringer  aa
                WaterBuffalo  aa
              AfricanBuffalo  aa
                   Sitatunga  aa
               MountainNyala  aa
                 NilgiriTahr  aa
B D                     ARS1  aa
                    WildGoat  aa
                SiberianIbex  aa
              AlpineMuskDeer  aa
       ChineseForestMuskDeer  aa
            SiberianMuskDeer  aa
                BlackMuntjac  aa
                MountainGoat  aa
                       Sheep  aa
             EuropeanMouflon  aa
              AsiaticMouflon  aa
                   SnowSheep  aa
                BighornSheep  aa
                BarbarySheep  aa
                      Bharal  aa
               IndianMuntjac  aa
               ReevesMuntjac  aa
              PereDavidsDeer  aa
             WhiteLippedDeer  aa
                 YarkandDeer  aa
                     RedDeer  aa
                     HogDeer  aa
             WhiteTailedDeer  aa
                    MuleDeer  aa
                    Reindeer  aa
              EasternRoeDeer  aa
              WesternRoeDeer  aa
                 EurasianElk  aa
            ChineseWaterDeer  aa
                       Okapi  aa
                     Giraffe  aa
                   Pronghorn  ga
               JavaMouseDeer  aa
             LesserMouseDeer  aa
                  ZebuCattle  aa
                        Gaur  aa
                    Steenbok  aa
          PrzewalskisGazelle  aa
               RoyalAntelope  aa
                 KirksDikDik  aa
                      Herola  aa
              MaxwellsDuiker  aa
               HarveysDuiker  aa
                       Oribi  aa
             ThomsonsGazelle  aa
               GrantsGazelle  aa
                     Gerenuk  aa
                       Saiga  aa
                   Springbok  aa
               BohorReedbuck  aa
            DefassaWaterbuck  aa
                      Lechwe  aa
                     Gemsbok  aa
          ScimitarHornedOryx  aa
                RoanAntelope  aa
               SableAntelope  aa
              BlueWildebeest  aa
                        Topi  aa
         GreaterHorseshoeBat  aa
     WesternEuropeanHedgehog  aa
                  HouseMouse  aa
            ChineseTreeShrew  aa
                      Alpaca  aa
           WildBactrianCamel  aa
                ArabianCamel  aa
                         Dog  aa
                  MinkeWhale  aa
                 KillerWhale  ga
                  SpermWhale  aa
              ChacoanPeccary  aa

Alignment block 13 of 179 in window, 6279507 - 6279530, 24 bps 
B D             ARS_UCD_addY  gatttcatgag---aaatagaccaatg
                      Rabbit  gattttgtgag---aaata---tgttg
              GreenSeaTurtle  aataatttgaa---tcatcatccaatg
                       Horse  gatttcatgag---aaatttactaatg
             ChinesePangolin  gatttcacgag---gaa-ttactagca
                       Human  gattgcatgag----aatatattaatg
                    Aardvark  tatttcatgag---aaatgcaataatg
                   BlueWhale  gatttcgtgag---aaatatactaatg
     CommonBottlenoseDolphin  gatttcatgag---aaatatactaatg
                 BelugaWhale  gatttcatgag---aaatatactaatg
                         Pig  gatttcatgag---aaataaactaatg
              FloridaManatee  tatttcataag---aaata---taatg
                       Gayal  gatttcatgag---aaatagaccaatg
               AmericanBison  gatttcatgag---aaatagaccaatg
                  LesserKudu  gatttcatgag---aaatataccaatg
                 CommonEland  gatttcatgag---aaatataccaatg
                     WildYak  gatttcatgag---aaatagaccaatg
                 DomesticYak  gatttcatgag---aaatagaccaatg
                 GreaterKudu  gatttcatgag---aaatataccaatg
                    Bushbuck  gatttcatgag---aaatataccaatg
                       Bongo  gatttcatgag---aaatataccaatg
                      Impala  gatttcatgag---aaatatactaatg
                        Suni  gatttcatgag---aaatatactaatg
                Klipspringer  gacttcacgag---aaatgtactaatg
                WaterBuffalo  gatttcatgag---aaatagaccaatg
              AfricanBuffalo  gatttcatgag---aaatagaccaatg
                   Sitatunga  gatttcatgag---aaatataccaatg
               MountainNyala  gatttcatgag---aaatataccaatg
                 NilgiriTahr  gacttcatgag---aaatatgctaatg
B D                     ARS1  gacttcatgag---aaatatgctaatg
                    WildGoat  gacttcatgag---aaatatgctaata
                SiberianIbex  gacttcatgag---aaatatgctaatg
              AlpineMuskDeer  gatttcatgag---aaatatattaatg
       ChineseForestMuskDeer  gatttcatgag---aaatatactaatg
            SiberianMuskDeer  gatttcatgag---aaatatactaatg
                BlackMuntjac  gatttcctgag---aaatatactaatg
                MountainGoat  gacttcatgag---aaatatgctaatg
                       Sheep  gacttcatgag---aaatatgctaatg
             EuropeanMouflon  gacttcatgag---aaatatgctaatg
              AsiaticMouflon  gacttcatgag---aaatatgctaatg
                   SnowSheep  gacttcatgag---aaatatgctaatg
                BighornSheep  gacttcatgag---aaatatgctaatg
                BarbarySheep  gacttcacgag---aaatatgctaatg
                      Bharal  gacttcatgag---aaatatgctaatg
               IndianMuntjac  gatttcctgag---aaatatactaatg
               ReevesMuntjac  gatttcctgag---aaatatactaatg
              PereDavidsDeer  gatttcctgag---aaatatactaatg
             WhiteLippedDeer  gatttcctgag---aaatatactaatg
                 YarkandDeer  gatttcctgag---aaatatactaatg
                     RedDeer  gatttcctgag---aaatatactaatg
                     HogDeer  gatttcctgag---aaatatactaatg
             WhiteTailedDeer  gatttcctgag---aaatatactaatg
                    MuleDeer  gatttcctgag---aaatatactaatg
                    Reindeer  gatttcctgag---aaatatactaatg
              EasternRoeDeer  gatttcctgag---aaatatactaagg
              WesternRoeDeer  gatttcctgag---aaatatactaagg
                 EurasianElk  gatttcctgag---aaatatactaacg
            ChineseWaterDeer  gatttcctgag---aaatatactaatg
                       Okapi  gatttcatgag---aaatatactaatg
                     Giraffe  gatttcatgag---aaatatactaatg
                   Pronghorn  gatttcatgag---caataccctaacg
               JavaMouseDeer  gatttcacgag---aaataggctaatg
             LesserMouseDeer  gatttcacgag---aaataggctaatg
                  ZebuCattle  gatttcatgag---aaatagaccaatg
                        Gaur  gatttcatgag---aaatagaccaatg
                    Steenbok  gatttcatgag---aaatatactaatg
          PrzewalskisGazelle  gatttcatggg---aaatatactaatg
               RoyalAntelope  gacttcatgag---aaatatactaatg
                 KirksDikDik  gatttcatgag---aaatatactaatg
                      Herola  gacttcatgag---aaatatactaatg
              MaxwellsDuiker  gacttcatgag---aaatatactaatg
               HarveysDuiker  gacttcgtgag---aaatatactaatg
                       Oribi  gatttcatgag---aaatatactaatg
             ThomsonsGazelle  gatttcatgag---aaatatactaatg
               GrantsGazelle  gatttcatgag---aaatatactaatg
                     Gerenuk  gatttcatgag---aaatatactaatg
                       Saiga  gatttcatgag---aaatatactaata
                   Springbok  gatttcatgag---aaatatactaatg
               BohorReedbuck  gatttcatgag---aaatagactaatg
            DefassaWaterbuck  gatttcatgag---aaatagactaatg
                      Lechwe  gatttcatgag---aaatagactaatg
                     Gemsbok  gacttcatgag---aaatatactaatg
          ScimitarHornedOryx  gacttcatgag---aaatatactaatg
                RoanAntelope  gacttcatgag---aaatatactgatg
               SableAntelope  gacttcatgag---aaatatactgatg
              BlueWildebeest  gacttcatgag---aaatatactgatg
                        Topi  gacttcatgag---aaatatactaatg
         GreaterHorseshoeBat  gatttcatgag---aaaagtattaatg
     WesternEuropeanHedgehog  catttcatgag---aaatagactaacg
                  HouseMouse  gatttcctgag---aaacataccgac-
            ChineseTreeShrew  aaacttatgag---tgataaactaatt
                      Alpaca  gatttcatcag---aaat---ctaatg
           WildBactrianCamel  gatttcatgag---aaat---ctaatg
                ArabianCamel  gatttcatgag---aaat---ctaatg
                         Dog  gatgtcacggagctgagc---tgaagg
                  MinkeWhale  gatttcatgag---aaatatactaatg
                 KillerWhale  gatttcatgag---aaatatactaatg
                  SpermWhale  gatttcatgag---aaatatactaatg
              ChacoanPeccary  gatttcatgag---aaataaactaatg

Alignment block 14 of 179 in window, 6279531 - 6279552, 22 bps 
B D             ARS_UCD_addY  a---gactgaaagctgctact----ttat
                      Rabbit  a---aactgaaatctgtcaca----ctgt
              GreenSeaTurtle  acctcactgtgatcttttatt----ttat
                       Horse  a---gactgaaatctgctgca----ttat
             ChinesePangolin  a---gactgaaatctgctgca----caat
                       Human  a---gacaaaaatctgctgca----ttat
                    Aardvark  a---gat-tgaatctgctgca----ttat
                   BlueWhale  a---gactgaaagctgctgca----taat
     CommonBottlenoseDolphin  a---gactgaaagctgctgca----taat
                 BelugaWhale  a---gactgaaagctgctgca----tact
                         Pig  a---gactgaaagctgctgta----ttat
              FloridaManatee  a---gattgaaatctgctgca----ttat
                       Gayal  a---gactgaaagctactact----ttat
               AmericanBison  a---gactgaaagctgctact----ttat
                  LesserKudu  a---gactgaaagctgctaca----ttat
                 CommonEland  a---gactgaaagctgctaca----ttat
                     WildYak  a---gactgaaagctgctact----ttat
                 DomesticYak  a---gactgaaagctgctact----ttat
                 GreaterKudu  a---gactgaaagctgctaca----ttat
                    Bushbuck  a---gactgaaagctgctaca----ttat
                       Bongo  a---gactgaaagctgctaca----ttat
                      Impala  a---gactgaaaggggctaca----ttat
                        Suni  a---gactgaaagctgctaca----ttat
                Klipspringer  a---gactgaaagctgctaca----ttat
                WaterBuffalo  a---gactgaaagctgccaca----ttat
              AfricanBuffalo  a---gactgaaagctgctaca----ttat
                   Sitatunga  a---gactgaaagctgctaca----ttat
               MountainNyala  a---gactgaaagctgctaca----ttat
                 NilgiriTahr  a---gactgaaagctgctaca----ttat
B D                     ARS1  a---gactgaaagctgctaca----ttat
                    WildGoat  a---gactgaaagctgctaca----ttat
                SiberianIbex  a---gactgaaagctgctaca----ttat
              AlpineMuskDeer  a---gactgaaagctgctaca----ttat
       ChineseForestMuskDeer  a---gactgaaagctgctaca----ttat
            SiberianMuskDeer  a---gactgaaagctgctaca----ttat
                BlackMuntjac  a---gactgaaagctgctaca--------
                MountainGoat  a---gactgaaagctgctaca----ttat
                       Sheep  a---gactgaaagctgctaca----ttat
             EuropeanMouflon  a---gactgaaagctgctaca----ttat
              AsiaticMouflon  a---gactgaaagctgctaca----ttat
                   SnowSheep  a---gactgaaagctgctaca----ttat
                BighornSheep  a---gactgaaagctgctaca----ttat
                BarbarySheep  a---gactgaaagctgctaca----ttat
                      Bharal  a---gactgaaagctgctaca----ttat
               IndianMuntjac  a---gactgaaaactgctaca--------
               ReevesMuntjac  a---gactgaaagctgctaca--------
              PereDavidsDeer  a---gactgaaagctgctaca--------
             WhiteLippedDeer  a---gactgaaagctgctaca--------
                 YarkandDeer  a---gactgaaagctgctaca--------
                     RedDeer  a---gactgaaagctgctaca--------
                     HogDeer  a---gactgaaagctgctaca--------
             WhiteTailedDeer  a---gactgaaagctgctcca--------
                    MuleDeer  a---gactgaaagctgctaca--------
                    Reindeer  a---gactgaaagctgctaca--------
              EasternRoeDeer  a---gactgaaagctgctaca--------
              WesternRoeDeer  a---gactgaaagctgctaca--------
                 EurasianElk  a---ggctgaaagctgctgca--------
            ChineseWaterDeer  a---gactgaaagctgctaca--------
                       Okapi  a---gactgaaagctgctacattat----
                     Giraffe  a---gactgaaagctgctacattat----
                   Pronghorn  a---gactgaaagctgcagca----tgat
               JavaMouseDeer  a---gacagaaagctgctgca----gtgt
             LesserMouseDeer  a---gacagaaagctgctgca----gtgt
                  ZebuCattle  a---gactgaaagctgctact----ttat
                        Gaur  a---gactgaaagctactact----ttat
                    Steenbok  a---gactgaaagctgctaca----ttat
          PrzewalskisGazelle  a---gactgaaagctgctaca----ttat
               RoyalAntelope  a---gactgaaagctgctaca----ttat
                 KirksDikDik  a---gactgaaagctgctaca----ttat
                      Herola  a---gactgaaagctgctaca----ttat
              MaxwellsDuiker  a---gactgaaagctgctacg----ttat
               HarveysDuiker  a---gactgaaagctgctacg----ttat
                       Oribi  a---gactgaaagctgctaca----ttat
             ThomsonsGazelle  a---gactgaaagctgctacg----ttat
                     Gerenuk  a---gactgaaagctgctacg----ttat
                       Saiga  a---gactgaaagctgctacg----ttat
                   Springbok  a---gactgaaagctgctacg----ttat
               BohorReedbuck  a---gactgaaagctgctaca----ttat
            DefassaWaterbuck  a---gactgaaagctgctaca----ttat
                      Lechwe  a---gactgaaagctcctaca----ttat
                     Gemsbok  a---gactgaaagctgctaca----ttat
          ScimitarHornedOryx  a---gactgaaagctgctaca----ttat
                RoanAntelope  a---gactgaaagctgctaca----ttat
               SableAntelope  a---gactgaaagctgctaca----ttat
              BlueWildebeest  a---gactgaaagctgctaca----ttat
                        Topi  a---gactgaaagctgctaca----ttat
         GreaterHorseshoeBat  a---gactaa-------------------
     WesternEuropeanHedgehog  a---gactgaaatgtgctata----gttt
                  HouseMouse  -----aatgaaatctgtc-------ttgc
            ChineseTreeShrew  t---gattgaaatctgctgca----ttat
                      Alpaca  a---gactgagagctgctgca----ttat
           WildBactrianCamel  a---gactgagagctgctgca----ttat
                ArabianCamel  a---gactgagagctgctgca----ttat
                         Dog  a---cgcaggaagctgcggca----ccat
                  MinkeWhale  a---gactgaaagctgctgca----taat
                 KillerWhale  a---gactgaaagctgctgca----taat
                  SpermWhale  a---gactgaaagctgctgca----taat
              ChacoanPeccary  a---gactgaaagctgctgca----ttac

Alignment block 15 of 179 in window, 6279553 - 6279553, 1 bps 
B D             ARS_UCD_addY  t
                      Rabbit  c
              GreenSeaTurtle  t
                       Horse  t
             ChinesePangolin  t
                       Human  t
                    Aardvark  t
                   BlueWhale  t
     CommonBottlenoseDolphin  t
                 BelugaWhale  t
                         Pig  t
              FloridaManatee  t
                       Gayal  t
               AmericanBison  t
                  LesserKudu  t
                 CommonEland  t
                     WildYak  t
                 DomesticYak  t
                 GreaterKudu  t
                    Bushbuck  t
                       Bongo  t
                      Impala  t
                        Suni  t
                Klipspringer  c
                WaterBuffalo  t
              AfricanBuffalo  t
                   Sitatunga  t
               MountainNyala  t
                 NilgiriTahr  c
B D                     ARS1  c
                    WildGoat  c
                SiberianIbex  c
              AlpineMuskDeer  t
       ChineseForestMuskDeer  t
            SiberianMuskDeer  t
                BlackMuntjac  t
                MountainGoat  c
                       Sheep  c
             EuropeanMouflon  c
              AsiaticMouflon  c
                   SnowSheep  c
                BighornSheep  c
                BarbarySheep  c
                      Bharal  c
               IndianMuntjac  t
               ReevesMuntjac  t
              PereDavidsDeer  t
             WhiteLippedDeer  t
                 YarkandDeer  t
                     RedDeer  t
                     HogDeer  t
             WhiteTailedDeer  c
                    MuleDeer  c
                    Reindeer  c
              EasternRoeDeer  t
              WesternRoeDeer  t
                 EurasianElk  t
            ChineseWaterDeer  t
                       Okapi  t
                     Giraffe  t
                   Pronghorn  t
               JavaMouseDeer  t
             LesserMouseDeer  t
                  ZebuCattle  t
                        Gaur  t
                    Steenbok  t
          PrzewalskisGazelle  t
                 KirksDikDik  t
                      Herola  c
              MaxwellsDuiker  c
               HarveysDuiker  c
                       Oribi  c
             ThomsonsGazelle  t
                     Gerenuk  t
                       Saiga  t
                   Springbok  t
               BohorReedbuck  t
            DefassaWaterbuck  t
                      Lechwe  t
                     Gemsbok  c
          ScimitarHornedOryx  c
                RoanAntelope  c
               SableAntelope  c
              BlueWildebeest  c
                        Topi  c
     WesternEuropeanHedgehog  t
                  HouseMouse  t
            ChineseTreeShrew  t
                      Alpaca  a
           WildBactrianCamel  a
                ArabianCamel  a
                         Dog  c
                  MinkeWhale  t
                 KillerWhale  t
                  SpermWhale  t
              ChacoanPeccary  t

Alignment block 16 of 179 in window, 6279554 - 6279590, 37 bps 
B D             ARS_UCD_addY  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                      Rabbit  tgtttccttaaaaagctaaaaagct------a-------aa----aga
                       Horse  tgttttcttagagagctaaaaagct------a-------aaca--aaa
             ChinesePangolin  tgtttcggtagagagctaaaaagct------g-------aaaaataaa
                       Human  tgttttcttatagagacaaaaaact------a-------aa----aaa
                    Aardvark  tatttctttatagagctgggaagct------a-------aa----tat
                   BlueWhale  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
     CommonBottlenoseDolphin  tgtttccttagagagctaaaaggct--------------aa----aaa
                 BelugaWhale  tgtttccttagagagctaaaaggct--------------aa----aaa
                         Pig  gttttcctt----agctaaacagctgaaaata-------aa----aaa
              FloridaManatee  tgtttctttatggagttagaaagct--------------aa----aaa
                       Gayal  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
               AmericanBison  tgtttccttagagagcgaaaaagctaaaaatc-------aa----aaa
                  LesserKudu  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                 CommonEland  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                     WildYak  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                 DomesticYak  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                 GreaterKudu  tgtttccttagagagctaaaaagctaaaaata-------ta----aaa
                    Bushbuck  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                       Bongo  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                      Impala  tatttccttagacagctgaaaagctaaaaatc-------aa----aaa
                        Suni  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                Klipspringer  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                WaterBuffalo  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
              AfricanBuffalo  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                   Sitatunga  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
               MountainNyala  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                 NilgiriTahr  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
B D                     ARS1  tgttttcttagagagctaaaaagctaaaaatc-------ag----aaa
                    WildGoat  tgttttcttagagagctaaaaagctaaaaatc-------ag----aaa
                SiberianIbex  tgttttcttagagagctaaaaagctaaaaatc-------ag----aaa
              AlpineMuskDeer  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
       ChineseForestMuskDeer  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
            SiberianMuskDeer  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                BlackMuntjac  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
                MountainGoat  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
                       Sheep  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
             EuropeanMouflon  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
              AsiaticMouflon  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
                   SnowSheep  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
                BighornSheep  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
                BarbarySheep  tgtttccttagagagctaaaaagctaaaaatc-------ag----aaa
                      Bharal  tgttttcttagagagctaaaaagctaaaaatc-------ag----aaa
               IndianMuntjac  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
               ReevesMuntjac  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
              PereDavidsDeer  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
             WhiteLippedDeer  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
                 YarkandDeer  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
                     RedDeer  tgtctccttagagagctcaaaagctaaaaata-------aa----aaa
                     HogDeer  tgtctccttagagagctcaaaagctaaaaatt-------aa----aaa
             WhiteTailedDeer  tgtctccttagagagctaaaaagctaaaaata-------aa----aaa
                    MuleDeer  tgtctccttagagagctaaaaagctaaaaata-------aa----aaa
                    Reindeer  tgtctccttagagagctgaaaagctaaaaata-------aa----aaa
              EasternRoeDeer  tgtctccttagagagctaaagagctaaaaata-------aa----aaa
              WesternRoeDeer  tgtctccttagagagctaaagagctaaaaata-------aa----aaa
                 EurasianElk  tgtctccttagagagctaaaaagctaaaaata-------aa----aaa
            ChineseWaterDeer  tgtctccttagagagctaaagagctaaaaata-------aa----aaa
                       Okapi  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                     Giraffe  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                   Pronghorn  tgtttccttagagaggtgaaaagca-aggata-------aa----aca
               JavaMouseDeer  tgtttccttagagagctaaaaagct-aatttt-------ga----aaa
             LesserMouseDeer  tgtttccttagagagctaaaaagct-aatttt-------ga----aaa
                  ZebuCattle  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                        Gaur  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                    Steenbok  tgtttccttagagagctagaaagctaaaaata-------aa----aaa
          PrzewalskisGazelle  tgtttccttagagagctagaaagctaaaaatc-------aa----aac
                 KirksDikDik  tgtttccttagagagctaaaaagctaaaaatc-------aa----aa-
                      Herola  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
              MaxwellsDuiker  tgtttccttagagagctaaaaagctgaaaatc-------aa----aaa
               HarveysDuiker  tgtttctttagagagctaaaaagctgaaaatc-------aa----aaa
                       Oribi  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
             ThomsonsGazelle  tgtttccctagagagctaaaaagctaaaaatc-------aa----aaa
                     Gerenuk  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                       Saiga  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                   Springbok  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
               BohorReedbuck  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
            DefassaWaterbuck  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                      Lechwe  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                     Gemsbok  tgtctccttagagagctaaaaagctaaaaatc-------aa----aaa
          ScimitarHornedOryx  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
                RoanAntelope  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
               SableAntelope  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
              BlueWildebeest  tgtttccttagagagctgaaaagctaaaaata-------aa----aaa
                        Topi  tgtttccttagagagctaaaaagctaaaaatc-------aa----aaa
         GreaterHorseshoeBat  --tttct-----------------------------------------
     WesternEuropeanHedgehog  ggtttcttttaaaa---agattttttaaaaaaaactaagaa----aca
                  HouseMouse  tgtttcctggcagtgccaaatagctcaaagt-----------------
            ChineseTreeShrew  tgtttctttatggagctcaaatgctaaaaac-----------------
                      Alpaca  tatcccctgagggagctaaaaagctaaaaat--------aa----aaa
           WildBactrianCamel  tattccctgagggagctaaaaagctaaaaata-------aa----aaa
                ArabianCamel  tattccctgagggagctaaaaagctaaaaata-------aa----aaa
                         Dog  ggcctcgccggagagctcaaaagccaaaaggagat----ga----gga
                  MinkeWhale  tgtttccttagagagctaaaaagctaaaaata-------aa----aaa
                 KillerWhale  tgtttccttagagagctaaaaggct--------------aa----aaa
                  SpermWhale  tgtttccttagagagctaagaagctaaaaa------------------
              ChacoanPeccary  gttttcctt----agctaaaaagctgaaaata-------aa----aac

Alignment block 17 of 179 in window, 6279591 - 6279616, 26 bps 
B D             ARS_UCD_addY  tgaaatgcttgcatagcattcatgtt
                      Rabbit  taaaaagcttgcacagcgttaatatt
                       Horse  taaaattcttgcacagcattaatatt
             ChinesePangolin  taaaatgcttgcatgggattaatgtt
                       Human  taaagtacttgcatagca--------
                    Aardvark  tacagagctggtacagcactgacgtt
                   BlueWhale  taaaatgcttgcat------------
     CommonBottlenoseDolphin  taaaatgcttgcatagcattaatgtt
                 BelugaWhale  taaaatgcttgcatagcattaatgtt
                         Pig  taaaatgcttgcatagcat---tgtt
              FloridaManatee  ttgaa---ttgcacagcattaacgtt
                       Gayal  tgaaatgcttgcatagcattcatgtt
               AmericanBison  tgaaatgcttgcatagcattcatgtt
                  LesserKudu  taaaatgcttgcctagcattcatgct
                 CommonEland  taaaatgcttgcctagcattcatgct
                     WildYak  tgaaatgcttgcatagcattcatgtt
                 DomesticYak  tgaaatgcttgcatagcattcatgtt
                 GreaterKudu  taaaatgcttgcctagcattcatgct
                    Bushbuck  taaaatgcttgcctagcattcatgct
                       Bongo  tgaaatgcttgcctagcattcatgct
                      Impala  tgaaatgcttgcatagcattcatgtt
                        Suni  tgaaatgcttgcatagcattcatgtt
                Klipspringer  tgaaatgcttgcatggcattcatggt
                WaterBuffalo  tgcaatgcgtgcatagcattcatgtt
              AfricanBuffalo  tgaaatgtttgcctagcattcatgtt
                   Sitatunga  tgaaatgcttgcctagcattcatgct
               MountainNyala  tgaaatgcttgcctagcattcatgct
                 NilgiriTahr  tgaaatgctcgcatagcattcatgtt
B D                     ARS1  tgaaatgctcgcatagcattcatgtt
                    WildGoat  tgaaatgctcgcatagcattcatgtt
                SiberianIbex  tgaaatgctcgcatagcattcatgtt
              AlpineMuskDeer  tgaaatgcttgcatagcattcatgtt
       ChineseForestMuskDeer  tgaaatgcttgcatagcattcatgtt
            SiberianMuskDeer  tgaaatgcttgcataacattcatgtt
                BlackMuntjac  tgaaatgcttgcatagcattcatgtt
                MountainGoat  tgaaatgctcgcatagcattcatgtt
                       Sheep  tgaaatgcttgcatagcattcgtgtt
             EuropeanMouflon  tgaaatgcttgcatagcattcacgtt
              AsiaticMouflon  tgaaatgcttgcatagcattcgtgtt
                   SnowSheep  tgaaatgcttgcatagcattcatgtt
                BighornSheep  tgaaatgcttgcatagcattcrtgtt
                BarbarySheep  tgaaatgctcgcatagcattcatgtt
                      Bharal  tgaaatgctcgcatagcattcatgtt
               IndianMuntjac  tgaaatgcttgcatagcattcatgtt
               ReevesMuntjac  tgaaatgcttgcatagcattcatgtt
              PereDavidsDeer  tgaaatgcttgcatagcattcatgtt
             WhiteLippedDeer  tgaaatgcttgcatagcattcatgtt
                 YarkandDeer  tgaaatgcttgcatagcattcatgtt
                     RedDeer  tgaaatgcttgcatagcattcatgtt
                     HogDeer  tgaaatgcttgcatagcattcatgtt
             WhiteTailedDeer  tgcaatgcttgcatagcattcatgtt
                    MuleDeer  tgcaatgcttgcatagcattcatgtt
                    Reindeer  tgcaatgcttgcatagcattcatgtt
              EasternRoeDeer  tgaaatgcttgcatagcattcatgtt
              WesternRoeDeer  tgaaatgcttgcatagcattcatgtt
                 EurasianElk  tgaaacgcttgcatagcattcatgtt
            ChineseWaterDeer  tgaaatgcttgcatagcattcatgtc
                       Okapi  tgaaatgcttgcatagcattcatgtt
                     Giraffe  ttaaatgcttgcatagcattcatgtt
                   Pronghorn  cgaagtgcttgcagagccttcatgct
               JavaMouseDeer  tgaaatgcttgcataacactcatggt
             LesserMouseDeer  tgaaattcttgcataacactcatggt
                  ZebuCattle  tgaaatgcttgcatagcattcatgtt
                        Gaur  tgaaatgcttgcatagcattcatgtt
                    Steenbok  tgaaatgcttgcatagcattcatgtt
          PrzewalskisGazelle  tgaaatgcttgcatagcattcatgtt
               RoyalAntelope  tgaaatgcttgcataacattcatgtt
                 KirksDikDik  tgaaatgcttgcatagcattcacgtt
                      Herola  tgaaatgcttgcatagcattcatgtt
              MaxwellsDuiker  tgaaatgcttgcatagcattcatgtt
               HarveysDuiker  tgaaacgcttgcatagcgttcatgtt
                       Oribi  tgaaatgcttgcatagcattcatgtt
             ThomsonsGazelle  tgaaatgcttgcatagcattcatgtt
                     Gerenuk  tgaaatgcttgcatagcatccatgtt
                       Saiga  tgaaatgcttgcacagcattcatgtt
                   Springbok  tgaaatgcttgcatagcattcatgtt
               BohorReedbuck  tgaaatgcttgcatagcattcgtgtt
            DefassaWaterbuck  tgaaatgcttgcatagcatttgtgta
                      Lechwe  tgaaatgcttgcatagcattcgtgtt
                     Gemsbok  tgaaatgcttgcatagcattcatgtt
          ScimitarHornedOryx  tgaaatgcttgcatagcattcatgtt
                RoanAntelope  tgaaatgcttacatagcattcatgtt
               SableAntelope  tgaaatgcttacatagcattcatgtt
              BlueWildebeest  tgaaatgcttgcatagcattcatgtt
                        Topi  tgaaatgcttgcatagcattcatgtt
         GreaterHorseshoeBat  gaaaatgcttgcatagcattaacgtt
     WesternEuropeanHedgehog  taaaatacttgcaaatcattaatgct
                  HouseMouse  taatatgctggctcagctttaatagt
            ChineseTreeShrew  taaaacgcctgcacagcattaatggt
                      Alpaca  taaaatgcttgtatagcattaatatt
           WildBactrianCamel  taaaatgcttgcatagcattaatatt
                ArabianCamel  taaaatgcttgcatagcattaatatt
                         Dog  taaaacgcctgcgtggcgctcacgtt
                  MinkeWhale  taaaatgcttgcat------------
                 KillerWhale  taaaatgcttgcatagcattaatgtt
                  SpermWhale  taaaatgcttgcatagcattaatgtt
              ChacoanPeccary  taaaatgcctgcatagtattaatgtt

Alignment block 18 of 179 in window, 6279617 - 6279704, 88 bps 
B D             ARS_UCD_addY  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                      Rabbit  atctag--tttaat-tggcaaat----acagcatgcttatgccttcacagcctcataccaaccagcaagg
                       Horse  atttag--tttaatatgacaaat----ataacatgcttatgctttcacagcttaataccac----caagg
             ChinesePangolin  atttag--tttaa------------------------taagcattcacagcttaataccac----cagtg
                       Human  --ttaa--tttaataaggcaaatatagatagcatgcttatgctttcacaat--aataccac----caagg
                    Aardvark  agttac--tttaaaatggcaaat----acaacatgcttgtgctttcacagctgaatacca-----caggg
                   BlueWhale  -----g--tttaatatgacaact----ataacatgcttatgctttcacagcttaataccac----caagg
     CommonBottlenoseDolphin  atacag--tttaatgtgacaact----ataacatgcttatgctttcacagcttaata-cac----caagg
                 BelugaWhale  atacag--tttaatgtgacaact----ataacatgcttatgctttcacagcttaataccac----caagg
                         Pig  atatag--tttaataagacaaat----ataacatgcttatgctttcacagcttaatgccac----caagg
              FloridaManatee  atttaa--tttaaaatgacgaat----acaatatgcttatgctttcacagcttaaaaccac----caagg
                       Gayal  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
               AmericanBison  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                  LesserKudu  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                 CommonEland  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                     WildYak  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                 DomesticYak  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                 GreaterKudu  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                    Bushbuck  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                       Bongo  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctat----caagg
                      Impala  atatag--tttagcatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                        Suni  atatag--tttagaatgacaact----ataacatgtttatgttttcacagcctaatgctac----caagg
                Klipspringer  atatag--attagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----ccagg
                WaterBuffalo  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
              AfricanBuffalo  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                   Sitatunga  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
               MountainNyala  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                 NilgiriTahr  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
B D                     ARS1  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                    WildGoat  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                SiberianIbex  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
              AlpineMuskDeer  atatag--tttagtatgacaacc----ataacattttaatattttcacagcttaatgctac----caagg
       ChineseForestMuskDeer  atatag--tttagtatgacaaccataaataacattttaatattttcacagcttaatgctac----caagg
            SiberianMuskDeer  atatag--tttagtatgacaacc----ataacattttaatattttcacagcttaatgctac----caagg
                BlackMuntjac  atatag--ttta----cacagct----ataacatgtttatgttttcacagcttaatgctac----caagg
                MountainGoat  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                       Sheep  atatag--tttaggatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
             EuropeanMouflon  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
              AsiaticMouflon  atatag--tttaggatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                   SnowSheep  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                BighornSheep  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                BarbarySheep  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                      Bharal  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
               IndianMuntjac  atatag--ttta----cacagct----ataacatgtttatgttttcacagcttaatgctac----caagg
               ReevesMuntjac  atatag--ttta----cacagct----ataacatgtttatgttttcacagcttaatgctac----caagg
              PereDavidsDeer  atatag--ttta----cacagct----ataacatgtttatgttttcccagcttaatgctac----caagg
             WhiteLippedDeer  atatag--ttta----cacagct----ataacatgtttatgttttcccagcttaatgctac----caagg
                 YarkandDeer  atatag--ttta----cacagct----ataacatgtttatgttttcccagcttaatgctac----caagg
                     RedDeer  atatag--ttta----cacagct----ataacatgtttatgttttcccagcttaatgctac----caagg
                     HogDeer  atatag--ttta----cacagct----atgacatgtttatgttttcccagcttaatgctac----caagg
             WhiteTailedDeer  atatag--ttta----cacaact----atagcatgtttatgtgttcacagcttaatgctac----caagg
                    MuleDeer  atatag--ttta----cacaact----ataacatgtttatgtgttctcagcttaatgctac----caagg
                    Reindeer  atatag--ttta----cacaact----ataacatgtttatgtgttcacagcttaatgctac----caagg
              EasternRoeDeer  atatag--ttta----cacagct----ataacatgtttatgatttcacagcttaatgctac----caagg
              WesternRoeDeer  atatag--ttta----cacagct----ataacatgtttatgatttcacagcttaatgctac----caagg
                 EurasianElk  atatag--ttta----cacaact----ataacatgtttatgtgttcacagcttaatgctac----caagg
            ChineseWaterDeer  atatag--ttta----cacagct----ataacatgtttatgttttcacagcttaatgctac----caagg
                       Okapi  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                     Giraffe  atatag--tctagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                   Pronghorn  atatag--tttagcatgacaact----ctaacaggtttatgtttccacagcttaatgctac----cgagg
               JavaMouseDeer  atatcg--tttagcatgacaact----ataacacgtttatgttttcacagtttaacagtac----caagg
             LesserMouseDeer  atatcg--tttagcatgacaact----ataacacgtttatgttttcacagtttaacagtac----caagg
                  ZebuCattle  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                        Gaur  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                    Steenbok  atatag--tttagaatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
          PrzewalskisGazelle  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
               RoyalAntelope  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                 KirksDikDik  acatag--tttagtatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
                      Herola  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
              MaxwellsDuiker  atatag--tttagtatggcaact----ataacatgtttatgttttcacagcttaatgctac----caagg
               HarveysDuiker  atatag--tttagtatggcaact----atagcatgtttatgttttcacagcttaatgctac----caagg
                       Oribi  atatag--tttagtatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
             ThomsonsGazelle  acatgg--tttagtatgacaact----atagcatgttcatattttcacagcttaatgctac----caaaa
                     Gerenuk  atatgg--tttagtatgacaact----atagcatgtttatgtttccacagcttaatgctac----caagg
                       Saiga  atatag--tttagtatgacaact----atagcatgttcatactttcacagcttaatgctac----caagg
                   Springbok  atatag--tttagtatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
               BohorReedbuck  atatag--tttagtatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
            DefassaWaterbuck  atatag--tttagtatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
                      Lechwe  atatag--tttagtatgacaact----atagcatgtttatgttttcacagcttaatgctac----caagg
                     Gemsbok  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caggg
          ScimitarHornedOryx  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                RoanAntelope  ctatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----cgagg
               SableAntelope  ctatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----cgagg
              BlueWildebeest  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
                        Topi  atatag--tttagtatgacaact----ataacatgtttatgttttcacagcttaatgctac----caagg
         GreaterHorseshoeBat  atttaagttgtaatgtgacacat----acaacgtgcttatgctttcacagcttaataccac----taagg
     WesternEuropeanHedgehog  acttaa--tataataagacatat----aaaacatatctatgctccgacagcttaattccac----cacag
                  HouseMouse  atttaa--ttttatgcggaaaat----gtagaatgcttgtgtgttcagagtctcacacta-----taatg
            ChineseTreeShrew  atctag-----tataaggcaaat----ataacatgcttatgctttcacagctcaataccac----caaga
                      Alpaca  atatag--tttagcatgacaaat----aaaatatgcttatgttttcacagcttaataccac----caagg
           WildBactrianCamel  atatag--tttagcatgac---------caatatgcttatgttttcacagcttaataccac----caagg
                ArabianCamel  atatag--tttagcatgac---------caatatgcttatgttttcacagcttaataccac----caagg
                  MinkeWhale  -----g--tttaatgtgacaact----ataacatgcttatgctttcacagcttaataccac----caagg
                 KillerWhale  atacag--tttaatgtgacaact----ataacatgcttatgctttcacagcttaata-cac----caagg
                  SpermWhale  atatag--tttaatgtgacaact----ataacatgcttatgctttcacagcttaataccac----caagg
              ChacoanPeccary  atatag--tttaataagacaaat----ataacatgcttaagctttcacagcttaataccac----caagg

                ARS_UCD_addY  taaaggattgggagacagtatcagcaat
                      Rabbit  c-gaggactggcagatactac-agcaat
                       Horse  c-aaaaattgggagatagtacaagcaat
             ChinesePangolin  t-aacaactgagagatactgcaagcaat
                       Human  c-aaggactgggagatactacaagcagt
                    Aardvark  c-aatggaagggaggtactatgagcagt
                   BlueWhale  t-aaggattgggagatactacaagcaat
     CommonBottlenoseDolphin  t-aaggattgggagatactacaagcaac
                 BelugaWhale  t-aaggattgggagatactacaagcaat
                         Pig  c-aaggattgggagtttctacaagcaat
              FloridaManatee  a-aaaggaagggagatactacaagcaat
                       Gayal  taaaggattgggagacagtatcagcaat
               AmericanBison  taaaggattgggagacagtatcagcaat
                  LesserKudu  taaaggattgggaaacagtatcagcaat
                 CommonEland  taaaggattgggagacagtatcagcaat
                     WildYak  taaaggattgggagacagtatcagcaat
                 DomesticYak  taaaggattgggagacagtatcagcaat
                 GreaterKudu  taaaggattgggagacagtatcagcaat
                    Bushbuck  taaaggattgggagacagtatcagcaat
                       Bongo  taaaggattgggagacagtatcagcaat
                      Impala  taaaggactgggagaca-tatcagccct
                        Suni  taaaggattgggagacagtatcagccat
                Klipspringer  taaaggattgggagatagtatcagccat
                WaterBuffalo  taaaggattgggagacagtatcagcaat
              AfricanBuffalo  taaaggattgggagacagtatcagcaat
                   Sitatunga  taaaggattgggagacagtatcagcaat
               MountainNyala  taaaggattgggagacagtatcagcaat
                 NilgiriTahr  tgaaggattgggagatagtagcagccat
                        ARS1  tgaaggattgggagatagtagcagccat
                    WildGoat  tgaaggattgggagatagtagcagccat
                SiberianIbex  tgaaggattgggagatagtagcagccat
              AlpineMuskDeer  taaagggttgggagacagtatcagcaat
       ChineseForestMuskDeer  taaagggttgggagacagtatcagcaat
            SiberianMuskDeer  taaagggttgggagacagtatcagcaat
                BlackMuntjac  cgaaggattgggagacagtaacagcagt
                MountainGoat  tgaaggattgggagatagtagcagccat
                       Sheep  tgaaggattgggagacagtagcagccat
             EuropeanMouflon  tgaaggattgggagacagtagcagccat
              AsiaticMouflon  tgaaggattgggagacagtagcagccat
                   SnowSheep  tgaaggattgggagatagtagcagccat
                BighornSheep  tgaaggattgggagatagtagcagccat
                BarbarySheep  tgaaggattgggagatagtagcagccat
                      Bharal  tgaaggattgggagatagtagcagccat
               IndianMuntjac  cgaaggattgggagacagtaacagcagt
               ReevesMuntjac  cgaaggattgggagacagtaacagcagt
              PereDavidsDeer  tgaaggattgggagacagtaacagcaat
             WhiteLippedDeer  tgaaggattgggagacagtaacagcaat
                 YarkandDeer  tgaaggattgggagacagtaacagcaat
                     RedDeer  tgaaggattgggagacagtaacagcaat
                     HogDeer  tgaaggattgggagacagtaacagcaat
             WhiteTailedDeer  taaaggattgggagacagtaacagcaat
                    MuleDeer  taaaggattgggagacagtaacagcaat
                    Reindeer  taaaggattgggagacagtaacagcaat
              EasternRoeDeer  taaaggattgggagacagtaacagcaat
              WesternRoeDeer  taaaggattgggagacagtaacagcaat
                 EurasianElk  taaaggattgggagacagtaacagcaat
            ChineseWaterDeer  taaaggattgggagacagtaacagcagt
                       Okapi  taaaggattgggagacagtataggcaat
                     Giraffe  taaaggattgggagacagtataagcaat
                   Pronghorn  gaaaggattgggagacaggagcagcaat
               JavaMouseDeer  t-aagggctgggagatagtataagcaat
             LesserMouseDeer  t-aagggctgggagatagtataagcaat
                  ZebuCattle  taaaggattgggagacagtatcagcaat
                        Gaur  taaaggattgggagacagtatcagcaat
                    Steenbok  taaaggattgggagacagtatcagcca-
          PrzewalskisGazelle  taaagcattgggagacagtatcagccat
               RoyalAntelope  taaaggattgggagatagtatcagccat
                 KirksDikDik  taaaggattgggagacagtatcagccat
                      Herola  taaaggattgggagatagtatcagccat
              MaxwellsDuiker  taaaggattgggagatagtatcagccat
               HarveysDuiker  taaaggattgggagatagtatcagccat
                       Oribi  taaaggattaggagacagtatcagccat
             ThomsonsGazelle  taaaggactgggagacagtatcagccat
                     Gerenuk  taaaggattgggagacagtatcagccat
                       Saiga  taaaggactgggagacagtatcagccat
                   Springbok  taaaggattgggagacagtatcagccct
               BohorReedbuck  gaaaggattgggagacagtatcagccat
            DefassaWaterbuck  gaaaggattgggagacagtatcagccat
                      Lechwe  gaaaggattgggagacagtatcagccat
                     Gemsbok  taaaggattgggagatagtatcagccat
          ScimitarHornedOryx  taaaggattgggagatagtatcagccat
                RoanAntelope  taaaggattgggagatagtatcagccat
               SableAntelope  taaaggattgggagatagtatcagccat
              BlueWildebeest  taaaggattgggagatagtatcagccat
                        Topi  taaaggattgggagatagtatcagccat
         GreaterHorseshoeBat  c-aattattgagagagactacaaacaat
     WesternEuropeanHedgehog  t-agtgactgggagatactacaagcaat
                  HouseMouse  t-aaggactgtgagattctataggcagt
            ChineseTreeShrew  c-aagggctggcaaatgcta---gcaat
                      Alpaca  c-aaggattgtaagatactgcaaacaat
           WildBactrianCamel  c-aaggattgtaagatactgcaaacaat
                ArabianCamel  c-aaggattgtaagatactgcaaacaat
                  MinkeWhale  t-aaggattgggagatactacaagcaat
                 KillerWhale  t-aaggattgggagatactacaagcaac
                  SpermWhale  t-aaggattgggagatactacaagcaat
              ChacoanPeccary  c-aagaattaggagttactacaagcaat

Alignment block 19 of 179 in window, 6279705 - 6279708, 4 bps 
B D             ARS_UCD_addY  gtg--a
                      Rabbit  gtt--a
                       Horse  gtt--a
             ChinesePangolin  gtt--a
                       Human  gtt--t
                    Aardvark  g-t--t
                   BlueWhale  gtg--a
     CommonBottlenoseDolphin  gtg--a
                 BelugaWhale  gtg--a
                         Pig  gtg--g
              FloridaManatee  gtt--a
                       Gayal  gtg--a
               AmericanBison  gtg--a
                  LesserKudu  gtg--a
                 CommonEland  gtg--a
                     WildYak  gtg--a
                 DomesticYak  gtg--a
                 GreaterKudu  gtg--a
                    Bushbuck  gtg--a
                       Bongo  gtg--a
                      Impala  gtg--a
                        Suni  gtg--a
                Klipspringer  gtg--a
                WaterBuffalo  gtg--a
              AfricanBuffalo  gtg--a
                   Sitatunga  gtg--a
                 NilgiriTahr  gtg--a
B D                     ARS1  gtg--a
                    WildGoat  gtg--a
                SiberianIbex  gtg--a
              AlpineMuskDeer  gtg--a
       ChineseForestMuskDeer  gtg--a
            SiberianMuskDeer  gtg--a
                BlackMuntjac  gtg--a
                MountainGoat  gtg--a
                       Sheep  gtg--a
             EuropeanMouflon  gtg--a
              AsiaticMouflon  gtg--a
                   SnowSheep  gtg--a
                BighornSheep  gtg--a
                BarbarySheep  gtg--a
                      Bharal  gtg--a
               IndianMuntjac  gtg--a
               ReevesMuntjac  gtg--a
              PereDavidsDeer  gtg--a
             WhiteLippedDeer  gtg--a
                 YarkandDeer  gtg--a
                     RedDeer  gtg--a
                     HogDeer  gtg--g
             WhiteTailedDeer  gtg--a
                    MuleDeer  gtg--a
                    Reindeer  gtg--a
              EasternRoeDeer  gtg--a
              WesternRoeDeer  gtg--a
                 EurasianElk  gtg--a
            ChineseWaterDeer  gtg--a
                       Okapi  gtg--a
                     Giraffe  gtg--a
                   Pronghorn  gtg--a
               JavaMouseDeer  gtg---
             LesserMouseDeer  gtg---
                  ZebuCattle  gtg--a
                        Gaur  gtg--a
                    Steenbok  -tg--a
          PrzewalskisGazelle  gtg--a
               RoyalAntelope  gtg--a
                 KirksDikDik  atg--a
                      Herola  gtg--a
              MaxwellsDuiker  gtg--a
               HarveysDuiker  gtg--a
                       Oribi  gtg--a
             ThomsonsGazelle  gtg--a
                     Gerenuk  atg--a
                       Saiga  gtg--a
                   Springbok  atg--a
               BohorReedbuck  gtg--a
            DefassaWaterbuck  gtg--a
                      Lechwe  gtg--a
                     Gemsbok  gtg--a
          ScimitarHornedOryx  gtg--a
                RoanAntelope  gtg--a
               SableAntelope  gtg--a
              BlueWildebeest  gtg--a
                        Topi  gtg--a
         GreaterHorseshoeBat  gtt---
     WesternEuropeanHedgehog  ttttaa
                  HouseMouse  gtt---
            ChineseTreeShrew  gtt--a
                      Alpaca  gtg--a
           WildBactrianCamel  gtg--a
                ArabianCamel  gtg--a
                  MinkeWhale  gtg--a
                 KillerWhale  gtg--a
                  SpermWhale  gtg--a
              ChacoanPeccary  gtg--g

Alignment block 20 of 179 in window, 6279709 - 6279781, 73 bps 
B D             ARS_UCD_addY  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
                      Rabbit  aaaa--------------ctc--------------a-cagggaattttataagtgcactt-gtaaaccaa
                       Horse  aaaa--------------ctt--------------a-catgagatttcataattgcgtttggttgcctaa
             ChinesePangolin  aaaa--------------ctt--------------accatgaaatttcataattgcatttggttgcctga
                       Human  aaaa--------------ctt--------------a-cattagattttagaattgtatttagttgtgtaa
                    Aardvark  aaaa--------------tgg--------------a-catgaaattttataattgcatttggttgtcaga
                   BlueWhale  aaaacttgaaattttttaact--------------a-catgaaatttcataactgcatttggttgtctga
     CommonBottlenoseDolphin  aaaacttgaaattttttaact--------------a-catgaaatttcataactgcatttggttgtctga
                 BelugaWhale  aaaacttgaaattttttaact--------------a-catgaaatttcataactgcatttggttgtctga
                         Pig  aaaa-------------------------------------aaa------------ggttggttgtctga
              FloridaManatee  aaac--------------ttt--------------a-cgtgaaattttataattgcatttggttgtctga
                       Gayal  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
               AmericanBison  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
                  LesserKudu  aaaa--------------ttt--------------a-catgaaatttcctgattgcatttggttgcctga
                 CommonEland  aaaa--------------ttt--------------a-catgaaatttcctgattgcatttggttgcctga
                     WildYak  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
                 DomesticYak  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
                 GreaterKudu  aaaa--------------ttc--------------a-catgaaatttcctgattgcatttggttgcctga
                    Bushbuck  aaaa--------------ttt--------------a-catgaaatttcctgattgcatttggttgcctga
                       Bongo  aaaa--------------ttt--------------a-catgaaatttcctgattgcatttggttgcctga
                      Impala  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                        Suni  aaaa--------------ttt--------------g-catgaaatttcctaattgcatctggttgcctga
                Klipspringer  aaaa--------------ctt--------------a-catgaaatttcctaattgcatttggttgcctga
                WaterBuffalo  aaat--------------ttt--------------a-catgaaagttcctaattgcatttggttgcctga
              AfricanBuffalo  aaat--------------ttt--------------a-catgaaatttcctaattgcatttcgttgcctga
                   Sitatunga  aaaa--------------ttt--------------a-catgaaatttcctgattgcatttggttgcctga
                 NilgiriTahr  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
B D                     ARS1  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                    WildGoat  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                SiberianIbex  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
              AlpineMuskDeer  aaaa--------------ttc--------------a-catgaaagttcctaattgcatttggttgcctga
       ChineseForestMuskDeer  aaaa--------------ttc--------------a-catgaaagttcctaattgcatttggttgcctga
            SiberianMuskDeer  aaaa--------------ttc--------------a-catgaaagttcctaattgcatttggttgcctga
                BlackMuntjac  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                MountainGoat  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                       Sheep  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
             EuropeanMouflon  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
              AsiaticMouflon  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                   SnowSheep  aaaa--------------ttt--------------a-catgaaatttcctaatcgcatttggttgcctga
                BighornSheep  aaaa--------------ttt--------------a-catgaaatttcctaatcgcatttggttgcctga
                BarbarySheep  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                      Bharal  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
               IndianMuntjac  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
               ReevesMuntjac  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
              PereDavidsDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
             WhiteLippedDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                 YarkandDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                     RedDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                     HogDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
             WhiteTailedDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                    MuleDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                    Reindeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
              EasternRoeDeer  aaag--------------ttt--------------a-catggaatttcctaattgcatttggttgcctga
              WesternRoeDeer  aaag--------------ttt--------------a-catggaatttcctaattgcatttggttgcctga
                 EurasianElk  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
            ChineseWaterDeer  aaag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                       Okapi  aaaa--------------ttt--------------a-catgaaatttcctaattgcatgtggttgcctga
                     Giraffe  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                   Pronghorn  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttgcttgccgga
               JavaMouseDeer  aaac--------------ttt--------------a-catgaaatttcctaatagcatttggttgtctga
             LesserMouseDeer  aaac--------------ttt--------------a-catgaaatttcctaatagcatttggttgtctga
                  ZebuCattle  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
                        Gaur  aaaa--------------ttt--------------a-catcaaatttcctaattgcatttggttgcctga
                    Steenbok  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttg-ctga
          PrzewalskisGazelle  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttg-ctga
               RoyalAntelope  aaat--------------ttt--------------a-catgaaatttcctaattgtatttggttgcctga
                 KirksDikDik  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttg-ctga
                      Herola  aaaa--------------ttt--------------a-catgaaattccctaattgcatgtggttgcctga
              MaxwellsDuiker  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
               HarveysDuiker  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
                       Oribi  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttcgttg-ctga
             ThomsonsGazelle  aaaa--------------ttt--------------a-catgaaatttcctaattggatttggttg-ctga
                     Gerenuk  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttg-ctga
                       Saiga  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttg-ctga
                   Springbok  aaaa--------------ttt--------------a-catgaaatttcctaattgcatttggttg-ctga
               BohorReedbuck  aaaa--------------ttt--------------a-cataaaatttcctaattgcatttggttgcctga
            DefassaWaterbuck  aaaa--------------ttt--------------a-cataaaatttcctaattgcatttggttgcctga
                      Lechwe  aaaa--------------ttt--------------a-cataaaatttcctaattgcatttggttgcctga
                     Gemsbok  aaag--------------ttc--------------a-catgaaatttcctaattgcatttggttgcctga
          ScimitarHornedOryx  aaag--------------ttc--------------a-catgaaatttcctaattgcatttggttgcctga
                RoanAntelope  caag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
               SableAntelope  caag--------------ttt--------------a-catgaaatttcctaattgcatttggttgcctga
              BlueWildebeest  aaaa--------------ttt--------------a-catgaaattccctaattgcatgtggttgcctga
                        Topi  aaaa--------------ttt--------------a-catgaaattccctaattgcatgtggttgcctga
         GreaterHorseshoeBat  aaaa--------------cgt--------------a-catgaaatttcctaattgcatttggtgggtgga
     WesternEuropeanHedgehog  aaaa--------------act--------------a-ggtaaagatt--------tatttggttgtctaa
                  HouseMouse  aaag--------------cat------------------gagaaatttacaattacat----ttgtctaa
            ChineseTreeShrew  aaaa--------------cat--------------c-cgtaaaattttataattgcatttggttgtctaa
                      Alpaca  aaaa--------------c----------------a-catgaaattc-ataattgcagttagttatctga
           WildBactrianCamel  aaaa--------------c----------------a-catgaaattt-gtaactgcagttagttatctga
                ArabianCamel  aaaa--------------c----------------a-catgaaattt-gtaactgcagttagttatctga
                  MinkeWhale  aaaa--------------ctcgaaattttttaacta-catgaaatttcataactgcatttggttgtctga
                 KillerWhale  aaaa--------------cttgaaattttttaacta-catgaaatttcataactgcatttggttgtctga
                  SpermWhale  aaaa--------------cttgaaattttttaacta-catgaaatttcataactgcatttggttgtctga
              ChacoanPeccary  aaaa--------------aaggg-----------------------------------ttggttgtctga

                ARS_UCD_addY  aatatgcatttataataacag--g--------------t-t--------------------tt-------
                      Rabbit  aatatgcatttattacaataa--g--------------c-t-----------------------------
                       Horse  aataagcatttataataacaa--g--------------t-t--------------------tt-------
             ChinesePangolin  agtatggatttgc-ataacaa-gg--------------t-t--------------------tt-------
                       Human  aataagtttt------------------------------------------------------------
                    Aardvark  aatatatatttataatatttt--g--------------t-t--------------------ttc------
                   BlueWhale  aatatgcatttataataacag--g--------------t-t--------------------tt-------
     CommonBottlenoseDolphin  aatatgcatttataataacag--g--------------t-t--------------------tt-------
                 BelugaWhale  aatatgcatttataataacag--g--------------t-t--------------------tt-------
                         Pig  aataggcatttgtaataacag--g--------------t-t--------------------tt-------
              FloridaManatee  aatatgtatttacta-------------------------------------------------------
                       Gayal  aatatgcatttataataacag--g--------------t-t--------------------tt-------
               AmericanBison  aatatgcatttataataacag--g--------------------------------------t-------
                  LesserKudu  aaggtgcatttataataacag--g--------------t-t--------------------tt-------
                 CommonEland  aaggtgcatttataataacagttt--------------t-t--------------------tt-------
                     WildYak  aatatgcatttataataacag--g--------------t-t--------------------tt-------
                 DomesticYak  aatatgcatttataataacag--g--------------t-t--------------------tt-------
                 GreaterKudu  aaggtgcatttataataacag--g--------------g-t--------------------tt-------
                    Bushbuck  aaggtgcatttataataacag--g-------tttttgtt-t--------------------tt-------
                       Bongo  aaggtgcatttataataacag--g--------------t-t--------------------tt-------
                      Impala  aatatgcatttataataacag--g--------------t-t--------------------tt-------
                        Suni  aatatgcatttataataacag--g--------------g-------------------------------
                Klipspringer  aatatgcagttataataatag--g--------------g-------------------------------
                WaterBuffalo  aatatgcatttataataacag--g--------------g-t--------------------tt-------
              AfricanBuffalo  aatatgcatttataataacag--g--------------------------------------t-------
                   Sitatunga  aaggtgcatttataataacag--g--------------t-t--------------------tt-------
                 NilgiriTahr  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                        ARS1  aatatgcatttcaaaaaacag--g--------------g-t--------------------tt-------
                    WildGoat  aatatgcatttcaaaaaacag--g--------------g-t--------------------tt-------
                SiberianIbex  aatatgcattt---ataacag--g--------------g-t--------------------tt-------
              AlpineMuskDeer  aatatgcatttataataacag--g-----------tttt-t--------------------tt-------
       ChineseForestMuskDeer  aatatgcatttataataacag--g------------ttt-t--------------------tt-------
            SiberianMuskDeer  aatatgcatttataataacag--g-----------tttt-t--------------------ct-------
                BlackMuntjac  aatatgcatttataataacag--g--------gtttttt-t--------------------tt-------
                MountainGoat  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                       Sheep  aatatgcatttataataacag--g--------------g-t--------------------tt-------
             EuropeanMouflon  aatatgcatttataataacag--g--------------g-t--------------------tt-------
              AsiaticMouflon  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                   SnowSheep  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                BighornSheep  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                BarbarySheep  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                      Bharal  aatatgcatttataataacag--g--------------g----------------------tt-------
               IndianMuntjac  aatatgcatttataataacag--g-------------------------------------tt-------
               ReevesMuntjac  aatatgcatttgtaataacag--g-------------------------------------tt-------
              PereDavidsDeer  aatatgcatttataataacag--g--------------g-t--------------------tt-------
             WhiteLippedDeer  aatatgcatttataataacag--g--------------gtt--------------------tt-------
                 YarkandDeer  aatatgcatttataataacag--g--------------gtt--------------------tt-------
                     RedDeer  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                     HogDeer  aatatgcatttataataacag--g--------------t-t------------------tgtt-------
             WhiteTailedDeer  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                    MuleDeer  aatatgcatttataataacag--g--------------g-t----------------tttttt-------
                    Reindeer  aatatgcatttataataacag--g--------------g-------------------ttttt-------
              EasternRoeDeer  aatatgcatttataataacag--g--------------g-a-------------------ttt-------
              WesternRoeDeer  aatatgcatttataataacag--g--------------g-a--------------------tt-------
                 EurasianElk  aatatgcatttataataacag--g--------------g-t--------------------tt-------
            ChineseWaterDeer  aatatgcatttataataacag--g--------------g-a--------------------tt-------
                       Okapi  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                     Giraffe  aatatgcatttataataatag--g--------------g-t--------------------tt-------
                   Pronghorn  aatatgcatttaccataacag--g------------gtt-t--------------------tg-------
               JavaMouseDeer  aatatgcatttctaataacag--g----------------t--------------------tt-------
             LesserMouseDeer  aatatgcatttctaataacag--g----------------t--------------------tt-------
                  ZebuCattle  aatatgcatttaaaataacag--ggtgtttttttttttt-t--------------------tt-------
                        Gaur  aatatgcatttataataacag--g--------ttttttt-t--------------------tt-------
                    Steenbok  aatatgcatttataataacag--g--------------t-ttttatttatttatttatttatt-------
          PrzewalskisGazelle  aatacgcatttataataacag--g--------------g-t--------------------tt-------
               RoyalAntelope  aatatgcatttataataacgg--g--------------gtt--------------------tt-------
                 KirksDikDik  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                      Herola  aatatgcatttataataacag--g--------------g-t--------------------tt-------
              MaxwellsDuiker  aatatgcatttataataacag--g--------------g-t--------------------tt-------
               HarveysDuiker  agtctgtatttataataacag--g--------------g-t--------------------tt-------
                       Oribi  aatatgcatttataataacag--g--------------t-t--------------------tt-tttttt
             ThomsonsGazelle  aatgtgcatttataataacag--g--------------g-t--------------------tt-t-----
                     Gerenuk  aatatgcatttataataactg--g--------------t-t--------------------tt-ttt---
                       Saiga  aatatgcatttataataacag--g------------ttt-t--------------------tt-------
                   Springbok  aatatgcatttataataacag--g----------ttttt-t--------------------tt-------
               BohorReedbuck  aatatgcatttataataacag--a--------------g-t--------------------tt-------
            DefassaWaterbuck  aatatgcatttataataacag--a--------------g-t--------------------tt-------
                      Lechwe  aatatgcatttataataacag--a--------------g-t--------------------tt-------
                     Gemsbok  aatatgcatttataataacag--g--------------g-t--------------------tt-------
          ScimitarHornedOryx  aatatgcatttataataacag--g--------------g-g--------------------tt-------
                RoanAntelope  aatatgcatttataataacag--g--------------g-t--------------------tt-------
               SableAntelope  aatatgcatttataataacag--g--------------g-t--------------------tt-------
              BlueWildebeest  aatatgcatttataataacag--g--------------g-t--------------------tt-------
                        Topi  aatatgcatttataataacag--g--------------g-t--------------------tt-------
         GreaterHorseshoeBat  aatatgcatttatagtaataa--g--------------c-t-----------------------------
     WesternEuropeanHedgehog  aatgtacatttgtaataatgc--a--------------t-t-----------------------------
                  HouseMouse  aatgtgcactag----------------------------t-----------------------------
            ChineseTreeShrew  aacatgcatttataataaggg--t--------------ttt-----------------------------
                      Alpaca  aatacgcatttataacagcag--a--------------c-t-----------------------------
           WildBactrianCamel  aatatgcatttataacagcag--a--------------c-t-----------------------------
                ArabianCamel  aatatgcatttataacagcag--a--------------c-t-----------------------------
                  MinkeWhale  aatatgcatttataataacag--g--------------t-t-----------------------------
                 KillerWhale  aatatgcatttataataacag--g--------------t-t-----------------------------
                  SpermWhale  aatatgcatttataataacag--g--------------t-t-----------------------------
              ChacoanPeccary  aatatgcatttgtaataatag--c--------------t-t-----------------------------

                ARS_UCD_addY  tttttt
                      Rabbit  ------
                       Horse  ------
             ChinesePangolin  ------
                       Human  ------
                    Aardvark  ------
                   BlueWhale  ------
     CommonBottlenoseDolphin  ------
                 BelugaWhale  ------
                         Pig  ------
              FloridaManatee  ------
                       Gayal  tttttt
               AmericanBison  tttttt
                  LesserKudu  tttttt
                 CommonEland  tttttt
                     WildYak  tttttt
                 DomesticYak  tttttt
                 GreaterKudu  tttttt
                    Bushbuck  tttttt
                       Bongo  tttttt
                      Impala  tttttt
                        Suni  tttttt
                Klipspringer  -gtttt
                WaterBuffalo  tttttt
              AfricanBuffalo  tttttt
                   Sitatunga  tttttt
                 NilgiriTahr  ttt---
                        ARS1  ttt---
                    WildGoat  ttt---
                SiberianIbex  ttt---
              AlpineMuskDeer  ttt---
       ChineseForestMuskDeer  ttt---
            SiberianMuskDeer  ttt---
                BlackMuntjac  ttt---
                MountainGoat  ttt---
                       Sheep  ttt---
             EuropeanMouflon  ttt---
              AsiaticMouflon  ttt---
                   SnowSheep  ttt---
                BighornSheep  ttt---
                BarbarySheep  ttt---
                      Bharal  ttt---
               IndianMuntjac  tttttt
               ReevesMuntjac  tttttt
              PereDavidsDeer  tttttt
             WhiteLippedDeer  tttttt
                 YarkandDeer  tttttt
                     RedDeer  tttttt
                     HogDeer  tttttt
             WhiteTailedDeer  tttttt
                    MuleDeer  tttttt
                    Reindeer  tttttt
              EasternRoeDeer  tttttt
              WesternRoeDeer  tttttt
                 EurasianElk  tttttt
            ChineseWaterDeer  tttttt
                       Okapi  tttttt
                     Giraffe  tttttt
                   Pronghorn  ------
               JavaMouseDeer  ------
             LesserMouseDeer  ------
                  ZebuCattle  ------
                        Gaur  ------
                    Steenbok  ------
          PrzewalskisGazelle  ------
               RoyalAntelope  ------
                 KirksDikDik  ------
                      Herola  ------
              MaxwellsDuiker  ------
               HarveysDuiker  ------
                       Oribi  ------
             ThomsonsGazelle  ------
                     Gerenuk  ------
                       Saiga  ------
                   Springbok  ------
               BohorReedbuck  ------
            DefassaWaterbuck  ------
                      Lechwe  ------
                     Gemsbok  ------
          ScimitarHornedOryx  ------
                RoanAntelope  ------
               SableAntelope  ------
              BlueWildebeest  ------
                        Topi  ------
         GreaterHorseshoeBat  ------
     WesternEuropeanHedgehog  ------
                  HouseMouse  ------
            ChineseTreeShrew  ------
                      Alpaca  ------
           WildBactrianCamel  ------
                ArabianCamel  ------
                  MinkeWhale  ------
                 KillerWhale  ------
                  SpermWhale  ------
              ChacoanPeccary  ------

Alignment block 21 of 179 in window, 6279782 - 6279784, 3 bps 
B D             ARS_UCD_addY  ttt----
                      Rabbit  -tt----
                       Horse  -tt----
             ChinesePangolin  -tt----
                       Human  -tt----
                    Aardvark  ctt----
                   BlueWhale  -tt----
     CommonBottlenoseDolphin  -tt----
                 BelugaWhale  -tt----
                         Pig  -tt----
                       Gayal  --t----
               AmericanBison  --t----
                  LesserKudu  --t----
                 CommonEland  --t----
                     WildYak  --t----
                 DomesticYak  --t----
                 GreaterKudu  --t----
                    Bushbuck  --t----
                       Bongo  --t----
                      Impala  --t----
                        Suni  --t----
                Klipspringer  --t----
                WaterBuffalo  --ttt--
              AfricanBuffalo  --ttt--
                   Sitatunga  --ttt--
               IndianMuntjac  --t--tt
               ReevesMuntjac  --t--tt
              PereDavidsDeer  --t--tt
             WhiteLippedDeer  --t--tt
                 YarkandDeer  --t--tt
                     RedDeer  --t--tt
                     HogDeer  --t--tt
             WhiteTailedDeer  --t--tt
                    MuleDeer  --t--t-
                    Reindeer  --t--t-
              EasternRoeDeer  --t--t-
              WesternRoeDeer  --t--t-
                 EurasianElk  --t--tt
            ChineseWaterDeer  --t--t-
                   Pronghorn  --t--tt
               JavaMouseDeer  --t--tt
             LesserMouseDeer  --t--tt
                  ZebuCattle  --t--tt
                        Gaur  --t--tt
                    Steenbok  --t--at
          PrzewalskisGazelle  --t--tt
               RoyalAntelope  --t--tt
                 KirksDikDik  --t--tt
                      Herola  --t--tt
              MaxwellsDuiker  --t--tt
               HarveysDuiker  --t--tt
                       Oribi  --t--tt
             ThomsonsGazelle  --t--tt
                     Gerenuk  --t--tt
                       Saiga  --t--tt
                   Springbok  --t--tt
               BohorReedbuck  --t--tt
            DefassaWaterbuck  --t--tt
                      Lechwe  --t--tt
                     Gemsbok  --t--tt
          ScimitarHornedOryx  --t--tt
                RoanAntelope  --t--tt
               SableAntelope  --t--tt
              BlueWildebeest  --t--tt
                        Topi  --t--tt
         GreaterHorseshoeBat  --t--tc
     WesternEuropeanHedgehog  --t--tt
                  HouseMouse  --t--tc
            ChineseTreeShrew  --t--tt
                      Alpaca  --t--tt
           WildBactrianCamel  --t--tt
                ArabianCamel  --t--tt
                  MinkeWhale  --t--tt
                 KillerWhale  --t--tt
                  SpermWhale  --t--tt
              ChacoanPeccary  --t--tt

Alignment block 22 of 179 in window, 6279785 - 6279785, 1 bps 
B D             ARS_UCD_addY  t
                      Rabbit  t
                       Horse  t
             ChinesePangolin  t
                       Human  t
                    Aardvark  t
                   BlueWhale  c
     CommonBottlenoseDolphin  c
                 BelugaWhale  c
                         Pig  t
                       Gayal  t
               AmericanBison  t
                  LesserKudu  c
                 CommonEland  c
                 GreaterKudu  c
                    Bushbuck  c
                       Bongo  t
                      Impala  t
                        Suni  t
                Klipspringer  t
                WaterBuffalo  t
              AfricanBuffalo  t
                 NilgiriTahr  t
B D                     ARS1  t
                    WildGoat  t
                SiberianIbex  t
              AlpineMuskDeer  t
       ChineseForestMuskDeer  t
            SiberianMuskDeer  t
                BlackMuntjac  t
                MountainGoat  t
                       Sheep  t
             EuropeanMouflon  t
              AsiaticMouflon  t
                   SnowSheep  t
                BighornSheep  t
                BarbarySheep  t
                      Bharal  t
               IndianMuntjac  c
              PereDavidsDeer  c
             WhiteLippedDeer  t
                 YarkandDeer  t
                     RedDeer  t
                     HogDeer  c
             WhiteTailedDeer  t
                 EurasianElk  c
                   Pronghorn  t
               JavaMouseDeer  t
             LesserMouseDeer  t
                  ZebuCattle  t
                        Gaur  t
                    Steenbok  t
          PrzewalskisGazelle  t
               RoyalAntelope  t
                 KirksDikDik  t
                      Herola  t
              MaxwellsDuiker  t
               HarveysDuiker  t
                       Oribi  t
             ThomsonsGazelle  t
                     Gerenuk  t
                       Saiga  t
                   Springbok  t
               BohorReedbuck  c
            DefassaWaterbuck  t
                      Lechwe  t
                     Gemsbok  t
          ScimitarHornedOryx  t
                RoanAntelope  t
               SableAntelope  t
              BlueWildebeest  t
                        Topi  t
         GreaterHorseshoeBat  t
     WesternEuropeanHedgehog  c
                  HouseMouse  c
            ChineseTreeShrew  t
                      Alpaca  t
           WildBactrianCamel  t
                ArabianCamel  t
                  MinkeWhale  t
                 KillerWhale  t
                  SpermWhale  t
              ChacoanPeccary  t

Alignment block 23 of 179 in window, 6279786 - 6279788, 3 bps 
B D             ARS_UCD_addY  cat
                      Rabbit  cac
                       Horse  cac
             ChinesePangolin  cac
                       Human  cac
                    Aardvark  tac
                         Pig  cac
                       Gayal  cat
               AmericanBison  cat
                  LesserKudu  cac
                 CommonEland  cac
                     WildYak  cat
                 DomesticYak  cat
                 GreaterKudu  cac
                    Bushbuck  cac
                       Bongo  cac
                      Impala  cac
                        Suni  cac
                Klipspringer  cac
                WaterBuffalo  cat
              AfricanBuffalo  cat
                   Sitatunga  cac
                 NilgiriTahr  cac
B D                     ARS1  cac
                    WildGoat  cac
                SiberianIbex  cac
              AlpineMuskDeer  cac
       ChineseForestMuskDeer  cac
            SiberianMuskDeer  cac
                BlackMuntjac  cac
                MountainGoat  cac
                       Sheep  cac
             EuropeanMouflon  cac
              AsiaticMouflon  cac
                   SnowSheep  cac
                BighornSheep  cac
                BarbarySheep  cac
                      Bharal  cac
               IndianMuntjac  cac
               ReevesMuntjac  cac
              PereDavidsDeer  cac
             WhiteLippedDeer  cac
                 YarkandDeer  cac
                     RedDeer  cac
                     HogDeer  cac
             WhiteTailedDeer  cac
                    MuleDeer  cac
                    Reindeer  cac
              EasternRoeDeer  cac
              WesternRoeDeer  cac
                 EurasianElk  cac
            ChineseWaterDeer  cac
                       Okapi  cac
                     Giraffe  cac
                   Pronghorn  cac
               JavaMouseDeer  cac
             LesserMouseDeer  cac
                  ZebuCattle  cat
                        Gaur  cat
                    Steenbok  tac
          PrzewalskisGazelle  cac
               RoyalAntelope  cac
                 KirksDikDik  cag
                      Herola  cac
              MaxwellsDuiker  cac
               HarveysDuiker  cac
                       Oribi  cac
             ThomsonsGazelle  cac
                     Gerenuk  cac
                       Saiga  cac
                   Springbok  cac
               BohorReedbuck  cac
            DefassaWaterbuck  cac
                      Lechwe  cac
                     Gemsbok  cgc
          ScimitarHornedOryx  cgc
                RoanAntelope  cgc
               SableAntelope  cgc
              BlueWildebeest  cac
                        Topi  cac
         GreaterHorseshoeBat  cac
     WesternEuropeanHedgehog  cac
                  HouseMouse  ccc
            ChineseTreeShrew  ccc
                      Alpaca  gac
           WildBactrianCamel  gac
                ArabianCamel  gac
                  MinkeWhale  ca-
                 KillerWhale  ca-
                  SpermWhale  ca-
              ChacoanPeccary  tt-

Alignment block 24 of 179 in window, 6279789 - 6279910, 122 bps 
B D             ARS_UCD_addY  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatctgggcatttgct
                      Rabbit  tagt-aa---taa--agaaagg--aag----gaacttgct-agaattttaagcttctttgagca-ctgct
                       Horse  taat-aa---tag--ag-aagg--aag----aaatttg-t-agacgtttaggtc-atttgagcatttgct
             ChinesePangolin  taat-aa---cag--agaaagg--aag----aaatttg-t-agatgtttaagcctatccgaacatttgct
                       Human  taat-aa---cagaaaaaaaaa--aag----aaacttgct-ggatgtttaagcttacttgagca-ctgct
                    Aardvark  aaat-ga---tag--agaaagg--aag----acatttgtt-agctgtttaaacctttttgagca-ttgct
                   BlueWhale  --at-aa---taa--agagaac--ag--aagaaatttg-t-agatgttgaagactatttgggaatttgct
     CommonBottlenoseDolphin  --at-aa---taa--agagaac--tggaaagaaatttg-t-agatgttgaagcctatgtgggcatttgct
                 BelugaWhale  --at-aa---taa--agagaac--cggaaagaaatttg-t-agatgttgaagcctatgtgggcatttgct
                         Pig  taat-ga---taa--agaaggg--aagatgtaaatttg-c-agatattgagccccattggggcatttgct
              FloridaManatee  --at-aa---tag--ggaaagg--aag-----catttg-ctagatgtttagacctatttgggca-ttgct
                       Gayal  taat-aa---aag--agaaagg--aag----aaatct--t-agaggttgaagcctatttgggcatttgct
               AmericanBison  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatttgggcatttgct
                  LesserKudu  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcgtttgct
                 CommonEland  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                     WildYak  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatttgggcatttgct
                 DomesticYak  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatttgggcatttgct
                 GreaterKudu  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggtgtttgct
                    Bushbuck  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcgtttgct
                       Bongo  taat-aa---aag--agaaaag--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                      Impala  taat-aa---gag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                        Suni  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                Klipspringer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcttatttgggcatttgct
                WaterBuffalo  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatttgggcatttgct
              AfricanBuffalo  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatttgggcatttgct
                   Sitatunga  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
               MountainNyala  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcgtttgct
                 NilgiriTahr  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
B D                     ARS1  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                    WildGoat  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                SiberianIbex  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
              AlpineMuskDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
       ChineseForestMuskDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
            SiberianMuskDeer  taat-aa---aag--agaaagg--aaa----aaatctg-t-agatgttgaagcctatttgggcatttgct
                BlackMuntjac  taat-ta---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
                MountainGoat  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                       Sheep  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
             EuropeanMouflon  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
              AsiaticMouflon  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
                   SnowSheep  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
                BighornSheep  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
                BarbarySheep  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                      Bharal  taat-aa---aag--agaaagg--aag----aaatctc-t-agatgttgaagcctatttgggcatttgct
               IndianMuntjac  taat-ta---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
               ReevesMuntjac  taat-ta---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
              PereDavidsDeer  taat-------ag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
             WhiteLippedDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
                 YarkandDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
                     RedDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
                     HogDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
             WhiteTailedDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatggtgaagcctatttggacatttgct
                    MuleDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatggtgaagcctatttggacatttgct
                    Reindeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatggtgaagcctatttggacatttgct
              EasternRoeDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacattcgct
              WesternRoeDeer  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
                 EurasianElk  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttggacatttgct
            ChineseWaterDeer  taat-aa---aag--agaaagg--gag----aaatctg-t-agatgttaaagcctatttggacatttgct
                       Okapi  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                     Giraffe  taat-aa---aag--aaaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                   Pronghorn  taataaa---aaa--agaaagg--aag----aaatctg-t-caatgtggaagcctatttgggcatctgct
               JavaMouseDeer  taat-aa---aat--agagaga--aag----aaaattg-t-agatgttgaagcctatttgggcatttgct
             LesserMouseDeer  taat-aa---aat--agagaga--aag----aaaattg-t-agatgttgaagcctatttgggcatttgct
                  ZebuCattle  taat-aa---aag--agaaagg--aag----aaatcta-t-agaggttgaagcctatttgggcgtttgct
                        Gaur  taat-aa---aag--agaaagg--aag----aaatctg-t-agaggttgaagcctatttgggcatttgct
                    Steenbok  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
          PrzewalskisGazelle  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatt-----------t
               RoyalAntelope  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                 KirksDikDik  taat-aa---aag--agagagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                      Herola  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
              MaxwellsDuiker  taat-aa---aag--agaaagg--aag----aaatctg-t-ggatgtggaagcctatttgggcatttgct
               HarveysDuiker  taat-aa---aag--agaaagg--aag----aaatctg-t-ggatgttgaagtctatttgggcatttgct
                       Oribi  taat-aa---aaa--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
             ThomsonsGazelle  taa--aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                     Gerenuk  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                       Saiga  taat-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                   Springbok  taaa-aa---aag--agaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
               BohorReedbuck  taat-aa---aag--ggaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
            DefassaWaterbuck  taat-aa---aag--ggaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                      Lechwe  taat-aa---aag--ggaaagg--aag----aaatctg-t-agatgttgaagcctatttgggcatttgct
                     Gemsbok  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
          ScimitarHornedOryx  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
                RoanAntelope  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
               SableAntelope  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
              BlueWildebeest  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
                        Topi  taat-aa---aag--agaaagg--aag----aagtctg-t-agatgttgaagcctatttgggcatttgct
         GreaterHorseshoeBat  tcag-aa---tag--agaaagg--aag----aaatttg-t-acatgtttgagcctatgtgagcatttgct
     WesternEuropeanHedgehog  t--------------agtgata--aag----agcttta-t-gaat-tccaagcctagttgagagtcttct
                  HouseMouse  tgac-tc---aca--ctaaaga--gag----atctctgct-ggat------gtttatttgaaca-ctgtt
            ChineseTreeShrew  caaa-aa---aag--agaaagg--aag----aaatttgct-acacattcaagcttatttaagca-ctgct
                      Alpaca  taat-aa---cag--agaaagg--aag----aagtttg-t-agatgttgaaacctatttgggcatttgct
           WildBactrianCamel  taat-aa---cag--agaaagg--aag----aagtttg-t-agatgttgaaacctatttgggcatttgct
                ArabianCamel  taat-aa---cag--agaaagg--aag----aagtttg-t-agatgttgaaacctatttgggcatttgct
                  MinkeWhale  taat-aa----ag--agaacag--aag----aaatttg-t-agatgttgaagactgtttgggcatttgct
                 KillerWhale  taat-aa----ag--agaactggaaag----aaatttg-t-agatgttgaagcctatgtgggcatttgct
                  SpermWhale  taat-aa----ag--agaacgg-aaag----aaatttg-t-aggtgttgaagcctatttgggcatttgct
              ChacoanPeccary  tact-aataatag--agaaatg-aaga-tgtaaattta-c-aaatattgaaccctatttgggcatttgct

                ARS_UCD_addY  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatggtcttcacagag-
                      Rabbit  gaaca--cctccagcgatttctgttattccaaac--tccc-tcacagtgt-tttgtgtgcttcacagatt
                       Horse  gaac---accaaaatgacttctgttactcaaaactatttc-tcatagtgtttttatgttcttcacaaatt
             ChinesePangolin  ggac---cctaggataacttctgttattcaaaac--tttc-tcatagtatttttaggttcttcacaaatt
                       Human  gaaaa--cctcaagtgatttctgttatttgaaactctctc----agtaatttttttgttcttcac-agtt
                    Aardvark  gaaca--cctagagttacttctgcttttgaaaactatctt-ttacaccatttttatgtttttcacaaatt
                   BlueWhale  gaaca--cctagaatgacttctgttattcaaaactatttc-tcccagtgtttttatgttcttcacaaatt
     CommonBottlenoseDolphin  gaaca--cctagaatgacttctgttattcaaaactatttc-tcacagtgtctttatgttcttcacaaatt
                 BelugaWhale  gaaca--cctagaatgacttctgttattcaaaactatttc-tcacagtgtttttatgttcttcacaaatt
                         Pig  gcacc--cctagaatgacttctgttattcagaacgatttc-tcacagtgtttctatgttcttcacaaatt
              FloridaManatee  gaatg--cctagagtta---ctgtcattcaaaactctctc-tcacagtgtttttatgtttttcacaaatc
                       Gayal  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
               AmericanBison  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                  LesserKudu  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                 CommonEland  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcaaagag-
                     WildYak  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                 DomesticYak  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                 GreaterKudu  gaaca--cttagaatgacttctgttattcagaactatttc-tcatagggtttttatgttcttcacagag-
                    Bushbuck  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                       Bongo  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                      Impala  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                        Suni  gaaca--cttagaatgacc--------------ctatttc-tcatagggtttttatgttcttcacagag-
                Klipspringer  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                WaterBuffalo  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagagtttttatgttcttcacagag-
              AfricanBuffalo  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagagtttttatgttcttcaccgag-
                   Sitatunga  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
               MountainNyala  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                 NilgiriTahr  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                        ARS1  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                    WildGoat  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                SiberianIbex  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
              AlpineMuskDeer  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagac-
       ChineseForestMuskDeer  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagac-
            SiberianMuskDeer  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagac-
                BlackMuntjac  gaaca--cttagaatgacttctgctattcaaaactatttc-tcaaagggtttttatgttcttcacagag-
                MountainGoat  gaaca--cttagaatgacttctgttatttaaaactatttc-tcatagggtttctatgttcttcatagag-
                       Sheep  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
             EuropeanMouflon  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
              AsiaticMouflon  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                   SnowSheep  gaaca--cttagaatgatttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                BighornSheep  gaaca--cttagaatgatttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                BarbarySheep  gaaca--cttagaataacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                      Bharal  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
               IndianMuntjac  gaaca--cttagaatgacttctgctattcaaaactatttc-tcaaagggtttttatgttcttcacagag-
               ReevesMuntjac  gaaca--cttagaatgacttctgctattcaaaactatttc-tcaaagggtttttatgttcttcacagag-
              PereDavidsDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatagggtttttatgttctttacagag-
             WhiteLippedDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatagggtttttatgttctttacagag-
                 YarkandDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatagggtttttatgatctttacagag-
                     RedDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcataggatttttatgatctttacagag-
                     HogDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatagggtttttatgttctttacagag-
             WhiteTailedDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatggggtttttatgttcttcacagag-
                    MuleDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatggggtttttatrttcttcacagag-
                    Reindeer  gaaca--cttagattgacttctgctattcaaaactatttc-tcatggggtttttatgttcttcacagag-
              EasternRoeDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcacggggtttttatgttcttcacagag-
              WesternRoeDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcacggggtttttatgttcttcacagag-
                 EurasianElk  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatggggtttttatgttcttcacagag-
            ChineseWaterDeer  gaaca--cttagaatgacttctgctattcaaaactatttc-tcatggggtttttatgttcttcacagag-
                       Okapi  gaaca--cttagaatgacttctgttattcaaaactgtttc-tcatagggtttttatgttcttcacagag-
                     Giraffe  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                   Pronghorn  gaaca--cttagaatgaattctgttattcaaaactgtttc-tcatagggtttttatgttcttcacagag-
               JavaMouseDeer  gaaca--tttagaatgactgctgtcattcaaaactgtttc-tcataatgtttatatgttcttcacagag-
             LesserMouseDeer  gaaca--tttagaatgactgctgtcattcaaaactgtttc-tcataatgtttatatgttcttcacagag-
                  ZebuCattle  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                        Gaur  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                    Steenbok  gaaca--cttagaatgacttctgttattcaaaactatttc-tcataggatttttatgttcttcatagag-
          PrzewalskisGazelle  gaaca--cttagaatgacttctgttattcaaaactatttc-tcataggatttttatgttcttcatagag-
               RoyalAntelope  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcacagag-
                 KirksDikDik  gaaca--cttagaatgacttctgttattcaaaactgtttt-tcatatgatttttatgttcttcatagag-
                      Herola  gaaca--cttagaatgacttctgttattgaaaactatttc-tcatagggtttttatgttcttcatagaa-
              MaxwellsDuiker  gaaca--cttagaatgacttctgttattcaaaactatttc-ttatagggtttttatgttcttcatagag-
               HarveysDuiker  gaaca--cttagaatgacttctgttattcaaaactatttc-ttatagggtttttacgttcttcatagaa-
                       Oribi  gaaca--cttagaatgacttctattattcaaaactatttc-tcataggatttttatgttcttcatagag-
             ThomsonsGazelle  gaaca--cttagaatgacttctgttattcaaaactatttc-tcataggatttttatgttcttcatagag-
                     Gerenuk  gaaca--cttagaacgacttctgttattcaaaactatttc-tcataggatttttatgttcttcatagag-
                       Saiga  gaata--cttagaatgacttctgttattcaaaactatttc-tcataggatttttatgttcttcatagag-
                   Springbok  gaaca--cttagaatgacttctgttattcaaaactatgtc-tcataggatttttatgttcttcatagag-
               BohorReedbuck  gaaca--cttagaatgacttctgttattcaaaactatgtc-tcatagggtttttatgttcttcatagag-
            DefassaWaterbuck  gaaca--cttagaatgacttctgttattcaaaactatgtc-tcatagggtttttatgttcttcatagag-
                      Lechwe  gaaca--cttagaatgacttctgttattcaaaactatgtc-tcatagggtttttatgttcttcatagag-
                     Gemsbok  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
          ScimitarHornedOryx  aaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
                RoanAntelope  gaaca--cttagaatgacttctgttattcaaaactatttc-ttatagggtttttatgttcttcatagag-
               SableAntelope  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagag-
              BlueWildebeest  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagaa-
                        Topi  gaaca--cttagaatgacttctgttattcaaaactatttc-tcatagggtttttatgttcttcatagaa-
         GreaterHorseshoeBat  gaatacctacacaatgacttctgttattcgaaacgatttc-tcacagtgtttttatgttctccacaaat-
     WesternEuropeanHedgehog  gaaca-----------gagtctgtttgtcaagactatttcttcactgtgattttatgttctttacaaat-
                  HouseMouse  ccaca--gttagagtgctttctgttatttaaaactgtcag-tctcagagcttctatgctcttgacaagc-
            ChineseTreeShrew  gaaca--cctagagtgatttctgttatttaaaataatctc-tccaagtgcttgc-tgttctttccaaat-
                      Alpaca  gacaa--cctagaatgacttctgttattcaaaactatttc-tcacagtgtttttatgttcttcacaaat-
           WildBactrianCamel  gacaa--cctagaatgacttctgttattcaaaactatttc-tcacagtgtttttatgttcttcacaaat-
                ArabianCamel  gacaa--cctagaatgacttctgttattcaaaactatttc-tcacagtgtttttatgttcttcacaaat-
                  MinkeWhale  gaaca--cctagaatgacttctgttattcaaaactatttc-tcacagtgcttttatgttcttcacaaat-
                 KillerWhale  gaaca--cctagaatgacttctgttattcaaaactatttc-tcacagtgtctttatgttcttcacaaat-
                  SpermWhale  gaaca--cctagaatgacttctgttattcaaaactatttc-tcacagtgtttttatgttcttcacaaat-
              ChacoanPeccary  gaacc--cctagaatgacttatgttattcagaactatttc-tcacagtgtttctacattcttcacaaat-

                ARS_UCD_addY  ----
                      Rabbit  aaaa
                       Horse  aaca
             ChinesePangolin  aaaa
                       Human  aaaa
                    Aardvark  aaaa
                   BlueWhale  aaag
     CommonBottlenoseDolphin  agag
                 BelugaWhale  agag
                         Pig  aaaa
              FloridaManatee  aaaa
                       Gayal  ----
               AmericanBison  ----
                  LesserKudu  ----
                 CommonEland  ----
                     WildYak  ----
                 DomesticYak  ----
                 GreaterKudu  ----
                    Bushbuck  ----
                       Bongo  ----
                      Impala  ----
                        Suni  ----
                Klipspringer  ----
                WaterBuffalo  ----
              AfricanBuffalo  ----
                   Sitatunga  ----
               MountainNyala  ----
                 NilgiriTahr  ----
                        ARS1  ----
                    WildGoat  ----
                SiberianIbex  ----
              AlpineMuskDeer  ----
       ChineseForestMuskDeer  ----
            SiberianMuskDeer  ----
                BlackMuntjac  ----
                MountainGoat  ----
                       Sheep  ----
             EuropeanMouflon  ----
              AsiaticMouflon  ----
                   SnowSheep  ----
                BighornSheep  ----
                BarbarySheep  ----
                      Bharal  ----
               IndianMuntjac  ----
               ReevesMuntjac  ----
              PereDavidsDeer  ----
             WhiteLippedDeer  ----
                 YarkandDeer  ----
                     RedDeer  ----
                     HogDeer  ----
             WhiteTailedDeer  ----
                    MuleDeer  ----
                    Reindeer  ----
              EasternRoeDeer  ----
              WesternRoeDeer  ----
                 EurasianElk  ----
            ChineseWaterDeer  ----
                       Okapi  ----
                     Giraffe  ----
                   Pronghorn  ----
               JavaMouseDeer  ----
             LesserMouseDeer  ----
                  ZebuCattle  ----
                        Gaur  ----
                    Steenbok  ----
          PrzewalskisGazelle  ----
               RoyalAntelope  ----
                 KirksDikDik  ----
                      Herola  ----
              MaxwellsDuiker  ----
               HarveysDuiker  ----
                       Oribi  ----
             ThomsonsGazelle  ----
                     Gerenuk  ----
                       Saiga  ----
                   Springbok  ----
               BohorReedbuck  ----
            DefassaWaterbuck  ----
                      Lechwe  ----
                     Gemsbok  ----
          ScimitarHornedOryx  ----
                RoanAntelope  ----
               SableAntelope  ----
              BlueWildebeest  ----
                        Topi  ----
         GreaterHorseshoeBat  ----
     WesternEuropeanHedgehog  ----
                  HouseMouse  ----
            ChineseTreeShrew  ----
                      Alpaca  ----
           WildBactrianCamel  ----
                ArabianCamel  ----
                  MinkeWhale  ----
                 KillerWhale  ----
                  SpermWhale  ----
              ChacoanPeccary  ----

Alignment block 25 of 179 in window, 6279911 - 6279911, 1 bps 
B D             ARS_UCD_addY  t
                      Rabbit  t
                       Horse  t
             ChinesePangolin  t
                    Aardvark  t
                   BlueWhale  t
     CommonBottlenoseDolphin  t
                 BelugaWhale  t
                         Pig  t
              FloridaManatee  t
                       Gayal  t
               AmericanBison  t
                  LesserKudu  a
                 CommonEland  a
                     WildYak  t
                 DomesticYak  t
                 GreaterKudu  a
                    Bushbuck  a
                      Impala  t
                        Suni  t
                Klipspringer  t
              AfricanBuffalo  t
                   Sitatunga  a
               MountainNyala  a
                 NilgiriTahr  t
B D                     ARS1  t
                    WildGoat  t
                SiberianIbex  t
              AlpineMuskDeer  t
       ChineseForestMuskDeer  t
            SiberianMuskDeer  t
                BlackMuntjac  t
                MountainGoat  t
                       Sheep  t
             EuropeanMouflon  t
              AsiaticMouflon  t
                   SnowSheep  t
                BighornSheep  t
                BarbarySheep  t
                      Bharal  t
               IndianMuntjac  t
               ReevesMuntjac  c
              PereDavidsDeer  t
             WhiteLippedDeer  t
                 YarkandDeer  t
                     RedDeer  t
                     HogDeer  t
             WhiteTailedDeer  t
                    MuleDeer  t
                    Reindeer  t
              EasternRoeDeer  t
              WesternRoeDeer  t
                 EurasianElk  t
            ChineseWaterDeer  t
                       Okapi  t
                     Giraffe  t
                   Pronghorn  t
               JavaMouseDeer  t
             LesserMouseDeer  t
                  ZebuCattle  t
                        Gaur  t
                    Steenbok  t
          PrzewalskisGazelle  t
               RoyalAntelope  t
                 KirksDikDik  t
                      Herola  t
              MaxwellsDuiker  t
               HarveysDuiker  t
                       Oribi  t
             ThomsonsGazelle  t
                     Gerenuk  t
                       Saiga  t
                   Springbok  t
               BohorReedbuck  t
            DefassaWaterbuck  t
                      Lechwe  t
                     Gemsbok  t
          ScimitarHornedOryx  t
                RoanAntelope  t
               SableAntelope  t
              BlueWildebeest  t
                        Topi  t
         GreaterHorseshoeBat  t
     WesternEuropeanHedgehog  t
                  HouseMouse  t
            ChineseTreeShrew  t
                      Alpaca  t
           WildBactrianCamel  t
                ArabianCamel  t
                  MinkeWhale  t
                 KillerWhale  t
                  SpermWhale  t
              ChacoanPeccary  t

Alignment block 26 of 179 in window, 6279912 - 6280024, 113 bps 
B D             ARS_UCD_addY  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                      Rabbit  gtttcc-ttt-cggaggctatt---acactgaggagca----agaaa-at-a---ttt----taa---at
                       Horse  attaga-ttt-tgaaagttatt---cccctggagattag--gaa-aa-at-a--tttt----tta---aa
             ChinesePangolin  atttaa-ttt-tgaaagctatt---actctggaaagtct--gaacaa-at-a--tttt----caa---ac
                       Human  atttaa-ttt-tgagagctatt---acactgaagaatat--gcaaaa-a-------tt----aaa---ta
                    Aardvark  attttg-ttt-ttaaagctact---gccctgaagagtat--gaaaaa-at-a--tttt----caa---aa
                   BlueWhale  atctaa-ttt-tgaaagctattacaacactggaaaatat--gaaaaa-at-at-tttt----tat---aa
     CommonBottlenoseDolphin  atctaa-ttt-tgaaagctattacaacactggaaaatat--gaaaaa-at-at-tttt----tat---aa
                 BelugaWhale  atctaa-ttt-tgaaagctattacaacactggaaaatat--gaaaaa-at-at-tttt----tat---aa
                         Pig  gtctaa-ttt-tgaaagctatt---acactggaaagtat---aaaaa-at-at-tttt----aaa---aa
              FloridaManatee  atctta-ttt-tgaaacctact---acattgaagagtgt--gaaaaa-at-a--ttta----aaa---aa
                       Gayal  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
               AmericanBison  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                  LesserKudu  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                 CommonEland  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                     WildYak  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                 DomesticYak  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                 GreaterKudu  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                    Bushbuck  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                       Bongo  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                      Impala  atctaa-ttt-tgaaagctatt---ccagtggaaaggat--aaaaaa-at-gt-tctt----gat---aa
                        Suni  atctaa-ttt-tgaaagctatt---acagtggaaaggataaaaaaaa-at-gt-tctt----aat---aa
                Klipspringer  atctaa-ttt-tgaaagttatt---tcagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                WaterBuffalo  ---taa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
              AfricanBuffalo  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                   Sitatunga  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
               MountainNyala  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                 NilgiriTahr  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
B D                     ARS1  a----a-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                    WildGoat  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                SiberianIbex  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
              AlpineMuskDeer  atctaa-ttt-tgaaagctatt---atagtggaaaggat----aaaa-at-at-tctt----aat---aa
       ChineseForestMuskDeer  atctaa-ttt-tgaaagctatt---atagtggaaaggat----aaaa-at-at-tctt----aat---aa
            SiberianMuskDeer  atctaa-ttt-tgaaagctatt---atagtggaaaggat----aaaa-at-at-tctt----aat---aa
                BlackMuntjac  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tctt----aat---aa
                MountainGoat  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                       Sheep  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
             EuropeanMouflon  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
              AsiaticMouflon  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                   SnowSheep  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                BighornSheep  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                BarbarySheep  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                      Bharal  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
               IndianMuntjac  atctaa-ttt-tgaaagttatt---acagtggaaaggat---aaaaa-at-at-tcttaataaat---aa
               ReevesMuntjac  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tcttaataaat---aa
              PereDavidsDeer  atctaa-ttt-tgaaagctatt---gcagtggaaaggat---aagaa-at-at-tctt----aat---aa
             WhiteLippedDeer  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aagaa-at-at-tctt----aat---aa
                 YarkandDeer  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aagaa-at-at-tctt----aat---aa
                     RedDeer  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aagaa-at-at-tctt----aat---aa
                     HogDeer  atctaa-ttt-tgaaagctatt---atagtggaaaggat---aagaa-at-at-tctt----aat---aa
             WhiteTailedDeer  atctaa-ttt-tgaaagccatt---acagtgaaaaggat---aaaaa-at-at-tctt----aat---aa
                    MuleDeer  atctaa-ttt-tgaaagccatt---acagtgaaaaggat---aaaaa-at-at-tctt----aat---aa
                    Reindeer  atctaa-ttt-tgaaagccatt---acagtgaaaaggat---aaaaa-at-at-tctt----aat---aa
              EasternRoeDeer  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tctt----aat---aa
              WesternRoeDeer  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tctt----aat---aa
                 EurasianElk  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tctt----aat---a-
            ChineseWaterDeer  atctaa-ttt-tgaaagctatt---acggtggaaaggat---aaaaa-at-gt-tctt----aat---at
                       Okapi  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-at-tctt----aat---ga
                     Giraffe  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-ataat-tctt----aat---ga
                   Pronghorn  atctaa-ttt-tgaaagctatt---gcagtggaaaggat--aaaaa--at-at-tctg----aat---aa
               JavaMouseDeer  atctaatttt-tgcaagctatt---actgtggaaaatat--aaaaa--at-atatttt----tat---ga
             LesserMouseDeer  atctaa-ttt-tgcaagctatt---actgtggaaaatat--aaaaaatat-at-tttt-----at---ga
                  ZebuCattle  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                        Gaur  atctaa-ttt-tgaaagctatt---agagtggaaaggat--aaaaga-at-at-tctt----aat---aa
                    Steenbok  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tctt----aat---aa
          PrzewalskisGazelle  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-at-cctt----aat---aa
               RoyalAntelope  atctag-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---ag
                 KirksDikDik  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tatt----aat---aa
                      Herola  atctaa-ttt-tgaaagctatt---acagtgaaaaggat--aaaaaa-at-gt-tctt----aat---aa
              MaxwellsDuiker  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
               HarveysDuiker  atctga-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                       Oribi  atctaa-ttt-tgaaagctatt---acagtggaaaggat---aaaaa-at-at-tctt----aat---aa
             ThomsonsGazelle  atctaa-ttt-tgaaagctatt---acagtggaaatgat--aaaaaa-at-at-tctt----aat---aa
                     Gerenuk  atctaa-ttt-tgaaagctatt---acagtggaaatgat--aaaaaa-at-at-tctt----aat---aa
                       Saiga  atctaa-ttt-tgaaagctatt---acagtggaaatgac-aaaaaaa-at-at-tctt----aat---aa
                   Springbok  atctaa-ttt-tgaaagctatt---acagtggaaatgat--aaaaaa-at-at-tctt----aat---aa
               BohorReedbuck  atctaa-tttatgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
            DefassaWaterbuck  atctaa-tttatgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                      Lechwe  atctaa-tttatgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                     Gemsbok  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
          ScimitarHornedOryx  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
                RoanAntelope  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
               SableAntelope  atctaa-ttt-tgaaagctatt---acagtggaaaggat--aaaaaa-at-gt-tctt----aat---aa
              BlueWildebeest  atctaa-ttt-tgaaagctatt---acagtgaaaaggat--aaaaaa-a--gt-tctt----aat---aa
                        Topi  atctaa-ttt-tgaaagctatt---acagtgaaaaggat--aaaaaa-at-gt-tctt----aat---aa
         GreaterHorseshoeBat  actcat-ttt-tgaaagctatt---acactggagagcat--gaagaa-at-at-tttt----aaa---aa
     WesternEuropeanHedgehog  atttaa-tct-tgaaatct-tt---ac-------agtag--ggaaaa-at-aa-ttgt----tta---aa
                  HouseMouse  a-ttaa-ttg-tgaaagctact---gcactggaaagtta--aagaag-tt-a------------a---at
            ChineseTreeShrew  atttaa-ttt-tgaaagctatt---gcactaaagaatac--aaaaca-at-a------------------
                      Alpaca  atctaa-ttt-tgaaagctatt---acactggaaagtat--aaaaa---t-at-tttt----aaa---aa
           WildBactrianCamel  atctaa-ttt-tgaaagctatt---acactggaaagtat--aaaaa---t-at-tttt----aaa---aa
                ArabianCamel  atctaa-ttt-tgaaagctatt---acactggaaagtat--aaaaa---t-at-tttt----aaa---aa
                  MinkeWhale  atctaa-ttt-tgaaagctattacaacactggaaaatat--gaaaaa-at-at-tttt----tat---aa
                 KillerWhale  atctaa-ttt-tgaaagctattacaacactggaaaatat--gaaaaa-at-at-tttt----tat---aa
                  SpermWhale  atctaa-ttt-tgaaagctattacaacactggaaaatat--gaaaa-----at-tttt----aaaaataa
              ChacoanPeccary  atctaa-ttt-tgaaatctact---atactggaaagtat--gaaaaa-at-at-tttt----aaa---aa

                ARS_UCD_addY  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcatagtgaaaaatcatgagc
                      Rabbit  actttatgta-ttagtaa---gagcaatgacgaaataaac-----------------cgtgact
                       Horse  atttaatgta-ttagtaa---gaaaaatgatgaagtaaacatagcataatgat-aatcatgagc
             ChinesePangolin  atttagtgta-tcagtaa---gagcactaatgaagtaaacatagcataatgat-aatcatgagc
                       Human  tcttaatgtg-ttagtaa---gaacaataatgaagtaaacatagcataataat-catcatgaac
                    Aardvark  attgaatgta-ttaataatacaagcaatgttgaagtaagcat------atgat-aatcatgagc
                   BlueWhale  atttaatgta-ttactaa---gagcaatgatgaagtaaacatagc---ataat-aatcatgagc
     CommonBottlenoseDolphin  atttaatgta-ttactaa---gagcaatgatgaagtaaacatagcataataat-aatcatgagc
                 BelugaWhale  atttaatgta-ttactaa---gagcaatgatgaagtaaacatagcataataat-aatcatgagc
                         Pig  atttaatgtt-ttggtaa---gagcaatgatgaagtaaacatagcataatggt-aattatgagc
              FloridaManatee  atttaatgta-ttagtaa---aagcaatgatgaagtaagcat------atgat-aatcgtgcac
                       Gayal  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
               AmericanBison  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                  LesserKudu  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                 CommonEland  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                     WildYak  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                 DomesticYak  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                 GreaterKudu  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                    Bushbuck  acttaatgta-tt----a---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                       Bongo  acttaatgta-ttagtaa---gagcaataaggaggtaaacacagcataatgaaaaattgtgagc
                      Impala  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                        Suni  acttaatgta-ttagtaa---cagcaataaggaagtaaacatagcataatgataaatcatgcgc
                Klipspringer  acttaatgta-ttagtaa---gagcaacaaagaagtaaacacagcataatgataaatcatgagc
                WaterBuffalo  ac--aatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
              AfricanBuffalo  actaaacgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                   Sitatunga  actttatgta-ttagtaa---gagcaataaggaggtaaacacagcataatgaaaaatcgtgagc
               MountainNyala  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcgtgagc
                 NilgiriTahr  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                        ARS1  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                    WildGoat  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                SiberianIbex  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
              AlpineMuskDeer  actcagtgta-tt----a---gagcaataaggaaataaaca--gcataatgataaatcatgagc
       ChineseForestMuskDeer  actcaatgta-tt----a---gagcaataaggaaataaaca--gcataatgataaatcatgagc
            SiberianMuskDeer  actcaatgta-tt----a---gagcaataaggaaataaaca--gcataatgataaatcatgagc
                BlackMuntjac  acttaatgta-ttagtaa---gagcaataaggaagtaaacattgcataatgataaatcatgagc
                MountainGoat  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcatgatgataaatcatgagc
                       Sheep  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
             EuropeanMouflon  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
              AsiaticMouflon  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                   SnowSheep  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                BighornSheep  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                BarbarySheep  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                      Bharal  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
               IndianMuntjac  acttaatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
               ReevesMuntjac  acttaatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
              PereDavidsDeer  acttaatgta-tt----a---gagcaataaggaagtaaacactgcataatgataaatcatgagc
             WhiteLippedDeer  acttaatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
                 YarkandDeer  acttaatgta-ttagtaa---gagcaataaggaagtaaatactgcataatgataaatcatgagc
                     RedDeer  acttaatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
                     HogDeer  acttaatgta-ctagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
             WhiteTailedDeer  ac--aatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
                    MuleDeer  ac--aatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
                    Reindeer  ac--aatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
              EasternRoeDeer  ac--aatgta-tt----a---gagcaataaggaagtaaacactgcataatgataaatcatgagc
              WesternRoeDeer  ac--aatgta-tt----a---gagcaataaggaagtaaacactgcataatgataaatcatgagc
                 EurasianElk  ac--aatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
            ChineseWaterDeer  ac--aatgta-ttagtaa---gagcaataaggaagtaaacactgcataatgataaatcatgagc
                       Okapi  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaaccatgagc
                     Giraffe  acttaatgta-ttagtta---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                   Pronghorn  acttcaggta-ttagtaa---gagcaa-aaggaaataaacacagcataatgataaatcataagc
               JavaMouseDeer  acttaatgta-ttagtaa---gggcaatgaggatttaaacacagcataatgat-aatcatgagc
             LesserMouseDeer  acttaatgta-ttagtaa---gggcaatgaggatttaaacacagcataatg-ataatcatgagc
                  ZebuCattle  acttaatgta-ttagtaa---gagctataaggaagtaaacacagcataatgaaaaatcatgagc
                        Gaur  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgaaaaatcatgagc
                    Steenbok  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
          PrzewalskisGazelle  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
               RoyalAntelope  acttaatata-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                 KirksDikDik  a-ttaatgta-tt----a---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                      Herola  acttaatgta-ttagtaa---gagcaataagaaagtaaacacagcataatgataaatcatgagc
              MaxwellsDuiker  acttaatgta-ttagtaa---gagcaataaggaagtaa--actgcataatgataaatcatgagc
               HarveysDuiker  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                       Oribi  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
             ThomsonsGazelle  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                     Gerenuk  acttaatgta-ttagtaa---gagcaataagggagtaaacacagcataatgataaatcatgagc
                       Saiga  ac--aatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                   Springbok  acttaatgta-ttagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
               BohorReedbuck  acttaatgta-ttagtaa---gagcaataaagaagtaaacacagcatgatgataaatcatgaaa
            DefassaWaterbuck  acttaatgta-ttagtaa---gagcaataaagaagtaaacacagcatgatgataaatcatgagc
                      Lechwe  acttaatgta-ttagtaa---gagcaataaagaagtaaacacagcatgatgataaatcatgagc
                     Gemsbok  acttaatgta-gtagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
          ScimitarHornedOryx  acttaatgta-gtagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
                RoanAntelope  acttaatgta-gtagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
               SableAntelope  acttaatgta-gtagtaa---gagcaataaggaagtaaacacagcataatgataaatcatgagc
              BlueWildebeest  acttaatgta-ttagtaa---gagcaataagaaagtaaacatagcataatgataaatcatgagc
                        Topi  acttaatgta-ttagtaa---gagcaataagaaagtaaacacagcataatgataaatcatgagc
         GreaterHorseshoeBat  tcgtaatgta-ttaataa---gagcaaagatgaagcaaacatagcataatgat-caccaggagc
     WesternEuropeanHedgehog  -cttaatgta-ttac-------agtcatgataaagtaaatatcacatcatgat-agctaccagt
                  HouseMouse  attaaatgca-ttatcat---gagccacgatgaagcaggcatagcaaaataat-actcaggacc
            ChineseTreeShrew  ttttaatgtattttttaa---cagcactgatgaagtaa--atggcataatgat-aaccacaagc
                      Alpaca  atttaatgta-ttagtaa---gagcaatgatgaagtaaacatagcataacaga-aatcatgagc
           WildBactrianCamel  atttaatgta-ttagtaa---gagcaatgatgaagtaaacatagcataataga-aatcatgagc
                ArabianCamel  atttaatgta-ttagtaa---gagcaatgatgaagtaaacatagcataataga-aatcatgagc
                  MinkeWhale  atttagtgta-ttactaa---gagcaatgatgaagtaaacatagcatgataat-aatcatgagc
                 KillerWhale  atttaatgta-ttactaa---gagcaatgatgaagtaaacatagcataataat-aatcatgagc
                  SpermWhale  atttaatgta-ttactaa---gagcaatgatgaagtaaacatagcataataat-aatcatgagc
              ChacoanPeccary  atttaatgta-ttgttaa---gagaaatgatgaagtaaatatagcataatggt-aattatgagc

Alignment block 27 of 179 in window, 6280025 - 6280063, 39 bps 
B D             ARS_UCD_addY  ta------atcagcagaaaatt-c-taagaaataaacattttaatta----------------
                      Rabbit  tc------aaattcagaaaatg-tctaggaaataaacacttcagttgggcaagttacggctcc
                       Horse  ta------attatcataaaatg-cctaataaataaacattttaatcaaagaggttatagctca
             ChinesePangolin  aa------attatcaaaaaata-cctaagaaataaacattttaatcaagtaggttataactca
                       Human  ta------aatattagaaaatg-cctaagaaataaacattttaattgggtaggttatggctca
                    Aardvark  tc------atgctcagaaaatg-cctaaggaataaatattttactagagtaaattacggctca
                   BlueWhale  ta------attatcagaaaatg-c-taagaaataaacattttaattgagtaggctatggctca
     CommonBottlenoseDolphin  ta------attatcagaaaatg-c-taagaaataaacattttaattgagtaggctatggctca
                 BelugaWhale  ta------attataagaaaatg-c-taagaaataaacattttaattgagtaggctatggctca
                         Pig  ta------attatcagaaaatg-c-caagaaataaacatttt-atcaagtaggttatggctca
              FloridaManatee  ta------attatcagacaatg-cttaccatataaagattttactacaatatgttagggctca
                       Gayal  ta------atcagcagaaaatt-c-taagaaataaacattttaattg----------------
               AmericanBison  ta------atcagcagaaaatt-c-taagaaataaacattttaattg----------------
                  LesserKudu  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
                 CommonEland  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
                     WildYak  ta------atcagcagaaaatt-c-taagaaataaacattttaattg----------------
                 DomesticYak  ta------atcagcagaaaatt-c-taagaaataaacattttaattg----------------
                 GreaterKudu  ta------atcagcagagaatg-c-taagaaataaacattttaattg----------------
                    Bushbuck  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
                       Bongo  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
                      Impala  ca------atgagcagaaaatg-c-taagaaataaacatttcaattg----------------
                        Suni  ca------aggagcagaaaatg-c-taagaaataaacattttaattg----------------
                Klipspringer  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                WaterBuffalo  ta------atcagcagaaaatg-c-taagaaataaacactttaattg----------------
              AfricanBuffalo  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
                   Sitatunga  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
               MountainNyala  ta------atcagcagaaaatg-c-taagaaataaacattttaattg----------------
                 NilgiriTahr  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
B D                     ARS1  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                    WildGoat  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                SiberianIbex  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
              AlpineMuskDeer  ta------attagcagaaaatg-c-taagaaataagcattttaattg----------------
       ChineseForestMuskDeer  ta------attagcagaaaatg-c-taagaaataagcattttaattg----------------
            SiberianMuskDeer  ta------attagcagaaaatg-c-taagaaataagcattttaattg----------------
                BlackMuntjac  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                MountainGoat  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                       Sheep  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
             EuropeanMouflon  ca------atgagcagaaaatg-c-taagaaataaacgttttaattg----------------
              AsiaticMouflon  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                   SnowSheep  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                BighornSheep  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                BarbarySheep  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                      Bharal  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
               IndianMuntjac  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
               ReevesMuntjac  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
              PereDavidsDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
             WhiteLippedDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                 YarkandDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                     RedDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                     HogDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
             WhiteTailedDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                    MuleDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                    Reindeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
              EasternRoeDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
              WesternRoeDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                 EurasianElk  ta------attagcagaaaatg-c-tacgaaataaacactttaattg----------------
            ChineseWaterDeer  ta------attagcagaaaatg-c-taagaaataaacactttaattg----------------
                       Okapi  ta------attagcagaaaatg-c-taagaaataagcattttaattg----------------
                     Giraffe  ta------attagcagaaaatg-c-taagaaataagcattttaattg----------------
                   Pronghorn  ta------attagcagaaaatg-c-taataaataaacatgttaattg----------------
               JavaMouseDeer  ta------attatcagaaaatg-c-taagaaataaacattttaattg----------------
             LesserMouseDeer  ta------attatcagaaaatg-c-taagaaataaacattttaattg----------------
                  ZebuCattle  ta------atcagcagaaaatt-c-taagaaataaacattttaattg----------------
                        Gaur  ta------atcagcagaaaatt-c-taagaaataaacattttaattg----------------
                    Steenbok  ca------atgtgcagaaaatg-c-taagaaataaacattttaattg----------------
          PrzewalskisGazelle  ca------atgagcagaaaatg-c-taagaaataaacattttaactg----------------
               RoyalAntelope  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                 KirksDikDik  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                      Herola  ca------atgagcagaaaatg-t-taagaaataaacattttaattg----------------
              MaxwellsDuiker  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
               HarveysDuiker  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                       Oribi  ca------atgagcagaaaatg-c-taagaaataaacattttgattg----------------
                   Springbok  ca------atgagcagaaaatg-c-taagaaataaacattttaactg----------------
               BohorReedbuck  ca------atgagcagaaaatg-c-taagaaataaacatcttaattg----------------
            DefassaWaterbuck  ca------atgagcagaaaatg-c-taagaaataaacatcttaattg----------------
                      Lechwe  ca------atgagcagaaaatg-c-taagaaataaacatcttaattg----------------
                     Gemsbok  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
          ScimitarHornedOryx  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
                RoanAntelope  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
               SableAntelope  ca------atgagcagaaaatg-c-taagaaataaacattttaattg----------------
              BlueWildebeest  cc------atgagcagaaaatg-t-taagaaataaacattttaattg----------------
                        Topi  ca------atgagcagaaaatg-t-taagaaataaacattttaattg----------------
         GreaterHorseshoeBat  tg------atgatcagaaaatgcc-taagaaatagacattttaatca----------------
     WesternEuropeanHedgehog  ga------attgtctgaaagtagc-taagaaataaacattttaacca----------------
                  HouseMouse  g-------agtatcagaaaacact-caggaaatgagca-ttaa--ct----------------
            ChineseTreeShrew  taaacatcaaaattagaaaatgcc-tatgaaataaaca-ttcaatcg----------------
                      Alpaca  ta------gtgattagaaaatg-c-caagaaataaacattttaatca----------------
           WildBactrianCamel  ta------atgattagaaaatg-c-caagaaataaacattttaatca----------------
                ArabianCamel  ta------atgattagaaaatg-c-caagaaataaacattttaatca----------------
                  MinkeWhale  ta------attatcagaaaatg-c-taagaaataaacattttaattg----------------
                 KillerWhale  ta------attatcagaaaatg-c-taagaaataaacattttaattg----------------
                  SpermWhale  ta------attatcagaaaatg-c-taagaaataaacattttaattg----------------
              ChacoanPeccary  ta------attatcagaaaatg-c-caagaaataaacatttt-atca----------------

Alignment block 28 of 179 in window, 6280064 - 6280091, 28 bps 
B D             ARS_UCD_addY  caaagttccacttataccctgaccatgg
                      Rabbit  tgaagtcct-ctcgtaccttgaccatgg
                       Horse  gag--tcctgcttacaccttgaccatag
             ChinesePangolin  caa---------agtaccttaaccatgg
                       Human  caaagtcctccttgtaccttgaccatag
                    Aardvark  cgaagcctcacttataccttgaccatgg
                   BlueWhale  caaagtcccacttataccttgaccatgg
     CommonBottlenoseDolphin  caaagtcccacttataccttgaccatgg
                 BelugaWhale  caaagtcccacttataccttgaccgtgg
                         Pig  caaagtcctgcttataccttgaccatgg
              FloridaManatee  caaagtcttacttgtaccttgaccatgg
                       Gayal  caaagttccacttataccctgaccatgg
               AmericanBison  caaagttccacttataccctgaccatgg
                  LesserKudu  caaagttccacttataccctgaccatgg
                 CommonEland  caaagttccacttataccctgaccatgg
                     WildYak  caaagttccacttataccctgaccatgg
                 DomesticYak  caaagttccacttataccctgaccatgg
                 GreaterKudu  caaagttccacttataccctgaccatgg
                    Bushbuck  caaagttccagttataccctgaccatgg
                       Bongo  caaagttccacttataccctgaccatgg
                      Impala  caaagttccacttataccctgaccatgg
                        Suni  caaagtttcacttataccctgaccatgg
                Klipspringer  aaaagttccgcttataccctgaccatgg
                WaterBuffalo  caaagttccacttataccctgaccatgg
              AfricanBuffalo  caaagttccacttataccctgaccatgg
                   Sitatunga  caaagttccacttataccctgaccatgg
               MountainNyala  caaagttccacttataccctgaccatgg
                 NilgiriTahr  caaagtcccacttataccctgaccatgg
B D                     ARS1  caaagtcccacttataccctgaccatgg
                    WildGoat  caaagtcccacttataccctgaccatgg
                SiberianIbex  caaagtcccacttataccctgaccatgg
              AlpineMuskDeer  caaagttccacttataccctggccatgg
       ChineseForestMuskDeer  caaagttccacttataccctggccatgg
            SiberianMuskDeer  caaagttccacttataccctggccatgg
                BlackMuntjac  caaagttccccttataccctgaccatgg
                MountainGoat  caaagtcctacttataccctgaccatgg
                       Sheep  caaagtcccacttataccctgaccatgg
             EuropeanMouflon  caaagtcccacttataccctgaccatgg
              AsiaticMouflon  caaagtcccacttataccctgaccatgg
                   SnowSheep  caaagtcccacttataccctgaccatgg
                BighornSheep  caaagtcccacttataccctgaccatgg
                BarbarySheep  caaagtcccacttataccctgaccatgg
                      Bharal  caaagtcccacttataccctgaccatgg
               IndianMuntjac  caaagttccccttataccctgaccatgg
               ReevesMuntjac  caaagttccccttataccctgaccatgg
              PereDavidsDeer  caaagttccacttataccctgaccatgg
             WhiteLippedDeer  caaagttccacttataccctgaccatgg
                 YarkandDeer  caaagttccacttataccctgaccatgg
                     RedDeer  caaagttccacttataccctgaccatgg
                     HogDeer  caaagttccacttataccctgaccatgg
             WhiteTailedDeer  caaagttccacttataccctgaccatgg
                    MuleDeer  caaagttycacttataccctgaccatgg
                    Reindeer  cgaagttccacttataccctgaccatgg
              EasternRoeDeer  caaacttccacttataccctgaccatgg
              WesternRoeDeer  caaacttccacttataccctgaccatgg
                 EurasianElk  caaagttccacttataccctgaccatgg
            ChineseWaterDeer  caaacttccacttataccctgaccatgg
                       Okapi  caaagttccacttataccctgaccatgg
                     Giraffe  caaagttccacttacaccctgaccatgg
                   Pronghorn  caaagttccacttataccctgaccatgg
               JavaMouseDeer  caagttcccacttaaaccttgaccatgg
             LesserMouseDeer  caagttcccacttaaaccttgaccatgg
                  ZebuCattle  caaagttccacttataccctgaccatgg
                        Gaur  caaagttccacttataccctgaccatgg
                    Steenbok  caaagttccacttataccctgaccatgg
          PrzewalskisGazelle  caaagttccacttgtaccctgaccatgg
               RoyalAntelope  caaagttccacttataccctgaccatgg
                 KirksDikDik  caaagttccacttataccctgaccatgg
                      Herola  caaagttccacttataccctgaccatgg
              MaxwellsDuiker  caaagttccacttataccctgaccatgg
               HarveysDuiker  caaagttccacttataccctgaccatgg
                       Oribi  caaagttccacttgtaccctgaccatgg
             ThomsonsGazelle  caaagttccacttgtaccctgaccatgg
                     Gerenuk  caaagttccacttgtaccctgaccatgg
                       Saiga  caaagttccacttgtaccctgaccatgg
                   Springbok  caaagttccacttgtaccctgaccatgg
               BohorReedbuck  caaagttccacttataccctgaccatgg
            DefassaWaterbuck  caaagttccacttataccctgaccatgg
                      Lechwe  caaagttccacttataccctgaccatgg
                     Gemsbok  caaagttccacttataccctgaccatgg
          ScimitarHornedOryx  caaagttccacttataccctgaccatgg
                RoanAntelope  caaagttccacttataccctgaccatgg
               SableAntelope  caaagttccacttataccctgaccatgg
              BlueWildebeest  caaagttccacttataccctgaccatgg
                        Topi  caaagttccacttataccctgaccatgg
         GreaterHorseshoeBat  caaagtgtcacttaagccttgaccatgg
     WesternEuropeanHedgehog  caaagtccgactaatctattgactatgg
                  HouseMouse  tgaaatgct-cctgtgccccttca----
            ChineseTreeShrew  tgaagtcctatctgtactctgacaaggg
                      Alpaca  caaagccctacttataccttggccatgg
           WildBactrianCamel  caaagtcctacttataccttggccatgg
                ArabianCamel  caaagtcctacttataccttggccatgg
                  MinkeWhale  caaagtcccacttataccttgaccatgg
                 KillerWhale  caaagtcccacttataccttgaccatgg
                  SpermWhale  caaagtcccacttataccttgaccatgg
              ChacoanPeccary  caaagtcctgcttataccttgaccatgg

Alignment block 29 of 179 in window, 6280092 - 6280186, 95 bps 
B D             ARS_UCD_addY  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                      Rabbit  t--gctattgtt--ggca----gtactgagtgtgtgta-tttcca-agcaggcata-ctgcttaataacc
                       Horse  t--actattgtt--gaga----gcacccggggtgcaca-tttcca-ggcaggcaca-ttgcttaataatc
             ChinesePangolin  c--actattgtt--gaga----gtacccagtctgcatg-tttcca-ggcaggcaca-ttgcttaataacc
                       Human  t--actattatt--gaga----gtacccagtttgtgta-cttcca-agcaggcaca-gtgcttaataacc
                    Aardvark  t--gctgttgtt--aata----gtacccagtcttcaaa-ttttca-gggaggcaca-ctgcttaataacc
                   BlueWhale  t--actattgtt--aaga----gtacccgacctgcata-tttcca-ggcaggcaca-t-gcttaataacc
     CommonBottlenoseDolphin  t--actattgtt--gaaa----gtacccgatctgcata-tttcca-ggcaggcaca-t-gcttaataact
                 BelugaWhale  t--actattgtt--gaaa----gtacccgatctgcata-tttcca-ggcaggcaca-t-gcttaataacc
                         Pig  t--actattgtt--gaga----gtaccctgtctgaata-tttcca-ggcaggcaca-t-gcttaataagc
              FloridaManatee  t--actattatt--gaaa----gtactccttctgcaaa-tttcca-gggaggtacc-cagcttaataacc
                       Gayal  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
               AmericanBison  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                  LesserKudu  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gattattaacc
                 CommonEland  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gattattaacc
                     WildYak  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                 DomesticYak  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                 GreaterKudu  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gattattaacc
                    Bushbuck  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gattattaacc
                       Bongo  t--actattgtt--gaga----gtacctggtctgcaca-tatctt-gg-aggcaca-t-gattattaacc
                      Impala  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-agacaca-t-gcttaataacc
                        Suni  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-tggcac-----cttaataacc
                Klipspringer  t--actgttgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                WaterBuffalo  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              AfricanBuffalo  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                   Sitatunga  t--actattgtt--gaga----gtacctggtctgcaca-tatctt-gg-aggcaca-t-gattattaacc
               MountainNyala  t--actattgtt--gaga----gtacctggtctgcaca-tatctt-gg-aggcaca-t-gattattaacc
                 NilgiriTahr  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
B D                     ARS1  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                    WildGoat  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                SiberianIbex  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              AlpineMuskDeer  t--actgttgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gtttaataacc
       ChineseForestMuskDeer  t--actgttgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gtttaataacc
            SiberianMuskDeer  t--actgttgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                BlackMuntjac  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                MountainGoat  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                       Sheep  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
             EuropeanMouflon  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              AsiaticMouflon  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                   SnowSheep  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                BighornSheep  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                BarbarySheep  t--actattgtt--gaga----gtacctggtctgcaca-tatctg-gg-aggcaca-t-gcttaataacc
                      Bharal  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
               IndianMuntjac  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
               ReevesMuntjac  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              PereDavidsDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-acttaataacc
             WhiteLippedDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                 YarkandDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                     RedDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                     HogDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
             WhiteTailedDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                    MuleDeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                    Reindeer  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              EasternRoeDeer  t--actattgtt--gagt----gtacctggtctgcaca-tatcca-gg-aggcaca-t-gcttaataacc
              WesternRoeDeer  t--actattgtt--gagt----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                 EurasianElk  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
            ChineseWaterDeer  t--actattgtt--gagt----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                       Okapi  t--actattgtt--gaga----gtacctggtctgcacc-tatcta-gg-aggcaca-t-gcttaataacc
                     Giraffe  t--actattgtt--gaga----gtacctggtctgcacc-tatcta-gg-aggcaca-t-gcttaataacc
                   Pronghorn  t--actattgtt--gaga----gtacctggtctgcacg-tatcta-gc-aggcaca-t-gcttaataacc
               JavaMouseDeer  t--actattgct--gaga----gtacctagcctgtata-tttccaggc-aggcaca-t-gcttaataatc
                  ZebuCattle  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                        Gaur  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                    Steenbok  t--actattgtt--gaga----gtacctggtctgcaca-tttcta-gg-aggcaca-t-gcttaataacc
          PrzewalskisGazelle  t--gctattgtt--gaga----gtgcctggtctgcacg-tatcta-gg-aggcaca-t-gcttaataacc
               RoyalAntelope  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                 KirksDikDik  t--actattgtt--gaca----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                      Herola  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              MaxwellsDuiker  t--actattgtt----ga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
               HarveysDuiker  t--actattgtt----ga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                       Oribi  t--actattgtt--gaga----gtgcctggtctgcaca-taccta-gg-aggcaca-t-gcttaataacc
             ThomsonsGazelle  t--actattgtt--gaga----gtgcctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                     Gerenuk  t--actattgtt--gaga----gtgcctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                       Saiga  t--actattgtt--gaga----gtgcctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                   Springbok  t--actattgtt--gaga----gtgcctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
               BohorReedbuck  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaacaacc
            DefassaWaterbuck  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaacaacc
                      Lechwe  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaacaacc
                     Gemsbok  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
          ScimitarHornedOryx  t--actattgtt--gaga----gtacctggtctgcata-tatcta-gg-aggcaca-t-gcttaataacc
                RoanAntelope  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
               SableAntelope  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
              BlueWildebeest  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
                        Topi  t--actattgtt--gaga----gtacctggtctgcaca-tatcta-gg-aggcaca-t-gcttaataacc
         GreaterHorseshoeBat  t--actgttgtt--gtgg----gtccccagtctgcata-tttcca-ggcaggaacatc-gcttactaagc
     WesternEuropeanHedgehog  ttagttactact--ataggaaagtacacagtctgcata-taagcc-agcagtcacact-gcctaatag--
                  HouseMouse  t--agcaccgcactgaga----gcgtcctggctgtgag-cgtcca-ggcaggaacagt-gatcggtaa--
            ChineseTreeShrew  t--attattgtg--gaga----gtacctagtctgtctg-tttcca-agcaggcacatt-acttaataa--
                      Alpaca  t--gctattgtt--gaga----atacccggtctgcacattttcca-ggcaggcacact-gcttaatatcc
           WildBactrianCamel  t--gctattgtt--gaga----atacccggtctgcaca-tttcca-ggcaggcacact-gcttaataacc
                ArabianCamel  t--gctattgtt--gaga----atacccggtctgcaga-tttcca-ggcaggcacact-gcttaataacc
                  MinkeWhale  t--actattgtt--aaga----gtacccgatctgcata-tttcca-ggcaggcaca-t-gcttaataacc
                 KillerWhale  t--actattgtt--gaaa----gtacccgatctgcata-tttcca-ggcaggcaca-t-gcttaataacc
                  SpermWhale  t--actattgtt--gaga----gtacccgatctgcata-tttcca-ggcaggcaca-t-gcttaataacc
              ChacoanPeccary  t--actattgtt--gaga----ctaccctgtctgcata-tttcca-ggcaggcaca-t-gcttaataagc

                ARS_UCD_addY  ttctaa---aatattatt----------------gtattcctcataggagg------g----agaac
                      Rabbit  ttcgcg---aa---tatt----------------tcattcttcataat-gg------a----acgac
                       Horse  tcctaa---aatacaatt----------------ttattcttcttgggagg------g----aggac
             ChinesePangolin  ttctaa---aatattatttcagtcttgatgggacttagtcttcatgggagg------a----aggaa
                       Human  ttctaa---aa---tatt----------------ttattcttcctgagagg------g----agggc
                    Aardvark  ttctaa---aatattatt----------------tcattttttatgggagg------g----acaat
                   BlueWhale  tcctaa---agtattatt----------------ttactcttcataggagg------g----aggac
     CommonBottlenoseDolphin  tcctaa---agtattatt----------------ttactcttcataggagg------g----aggac
                 BelugaWhale  tcctaa---agtattatt----------------ttactcttcataggagg------g----aggac
                         Pig  t-ctac---aatattatt----------------ttctttttcataggagg------gagaaagaac
              FloridaManatee  ttctaa---aatattatt----------------ttattctttatggaagg------g----atgac
                       Gayal  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
               AmericanBison  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                  LesserKudu  ttctaa---agtattatt----------------ttattcctcatagaagg------g----agaac
                 CommonEland  ttctaa---aatattatt----------------ttattcctcatagaagg------g----agaac
                     WildYak  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                 DomesticYak  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                 GreaterKudu  ttctaa---aatattatt----------------ttattcctcatagaagg------g----agaac
                    Bushbuck  ttctaa---aatattatt----------------ttattcctcatagaagg------g----agaac
                       Bongo  ttctaa---aatattatt----------------ttattcctcatagaagg------g----agaac
                      Impala  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                        Suni  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                Klipspringer  ttctaaaataatattatt----------------ttattccttataggagg------g----agaac
                WaterBuffalo  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
              AfricanBuffalo  ttctaa---agtattatt----------------ttattcctcataggagg------g----agaac
                   Sitatunga  ttctaa---aatattatt----------------ttattcctcatagaagg------g----agaac
               MountainNyala  ttctaa---aatattatt----------------ttattcctcatagaagg------g----agaac
                 NilgiriTahr  ttctaa---aatattatt----------------tgattcctcataggagg------g----agaac
                        ARS1  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                    WildGoat  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                SiberianIbex  ttctaa---aatattatt----------------ttattcctcataggagg------a----agaac
              AlpineMuskDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
       ChineseForestMuskDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
            SiberianMuskDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
                BlackMuntjac  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
                MountainGoat  ttctaa---aatataatt----------------ttattcctcataggagg------g----agaac
                       Sheep  ttctaa---aatattatt----------------tgattcctcataggagg------g----agaac
             EuropeanMouflon  ttctaa---aatattatt----------------tgattcctcataggagg------g----agaac
              AsiaticMouflon  ttctaa---aatattatt----------------tgattcctcataggagg------g----agaac
                   SnowSheep  ttctaa---aatattatt----------------tgattcctcataggagg------g----agaac
                BighornSheep  ttctaa---aatattatt----------------tgattcctcataggagg------g----agaac
                BarbarySheep  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                      Bharal  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
               IndianMuntjac  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
               ReevesMuntjac  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
              PereDavidsDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
             WhiteLippedDeer  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                 YarkandDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
                     RedDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
                     HogDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
             WhiteTailedDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
                    MuleDeer  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
                    Reindeer  ttctaa---actattatt----------------ttattccttataggagg------g----agaac
              EasternRoeDeer  ttctaa---aatattatt----------------ttattccttatagaagg------g----agaac
              WesternRoeDeer  ttctaa---aatattatt----------------ttattccttatagaagg------g----agaac
                 EurasianElk  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
            ChineseWaterDeer  ttctaa---aatattatt----------------ttattccttatagaagg------g----agaac
                       Okapi  ttctaa---aatattatt----------------ttatttcttataggagg------g----agaac
                     Giraffe  ttctaa---aatattgtt----------------ttattccttataggatg------g----agaac
                   Pronghorn  ttctaa---aatattatt----------------ttattccttataggagg------g----agaac
               JavaMouseDeer  ttctaa---aagattatt----------------ttattcttcatgggagg------g----aggac
                  ZebuCattle  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                        Gaur  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                    Steenbok  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
          PrzewalskisGazelle  ttctaa---catattatt----------------ttattcctcatacgagg------g----agagc
               RoyalAntelope  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                 KirksDikDik  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                      Herola  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
              MaxwellsDuiker  ttctaa---aacattatt----------------ttattcctcata-gagg------g----agaac
               HarveysDuiker  ttctaa---aacattatt----------------ttattcctcata-gagg------g----agaac
                       Oribi  tgctaa---aatattatt----------------ttattcctcataggagg------g----agaac
             ThomsonsGazelle  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaaa
                     Gerenuk  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                       Saiga  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                   Springbok  ttctaa---aatattatt----------------ttattcctcacaggagg------g----agaac
               BohorReedbuck  ttctaa---aatatt-tt----------------ttattcctcataggagg------g----agaac
            DefassaWaterbuck  ttctaa---aatatt-tt----------------ttattcctcataggagg------g----agaac
                      Lechwe  ttctaa---aatatt-tt----------------ttattcctcataggagg------g----agaac
                     Gemsbok  ttctaa---aatattatt----------------ctattcctcataggagg------g----ataac
          ScimitarHornedOryx  ttctaa---aatattatt----------------ctattcctcataggagg------g----ataac
                RoanAntelope  ttctaa---aatattatt----------------ctattcctcataggagg------g----ataac
               SableAntelope  ttctaa---aatattatt----------------ctattcctcataggagg------g----ataac
              BlueWildebeest  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaac
                        Topi  ttctaa---aatattatt----------------ttattcctcataggagg------g----agaat
         GreaterHorseshoeBat  ttctga---aatattatt----------------ttattcttcatgggagg------g----aggac
     WesternEuropeanHedgehog  -ccaga---aagatcatt----------------ttattcttcatgagagg------t----tcgaa
                  HouseMouse  -ccctc---taaaagatt----------------taattctttatgagagggagggtg----aggac
            ChineseTreeShrew  -ccttg---caaaatatg----------------ttattcttaatgaaagg------a----aggac
                      Alpaca  ttctaa---aatatgatt----------------ttattattcatggaagg------g----aggac
           WildBactrianCamel  ttctaa---aatatgatt----------------ttattattcatggaagg------g----aggac
                ArabianCamel  ttctaa---aatatgatt----------------ttattattcatggaagg------g----aggac
                  MinkeWhale  tcctga---agtattatt----------------ttactcttcataggagg------g----aggac
                 KillerWhale  tcctaa---agtattatt----------------ttactcttcataggagg------g----aggac
                  SpermWhale  tcctaa---agtattatt----------------ttactcttcataggagg------g----aggac
              ChacoanPeccary  t-ctaa---aatattatt----------------ttctttttcataggagg------g----agaac

Alignment block 30 of 179 in window, 6280187 - 6280200, 14 bps 
B D             ARS_UCD_addY  ta-ttacctatatgt
                      Rabbit  ta-ttacctgt----
                       Horse  ta-ctacctgt----
             ChinesePangolin  ta-ttacctgt----
                       Human  tt-ttacctgt----
                    Aardvark  ttattacctgt----
                   BlueWhale  ta-ttacctgt----
     CommonBottlenoseDolphin  ta-ttacctgt----
                 BelugaWhale  ta-ttacctgt----
                         Pig  ta-ttacctgt----
              FloridaManatee  ta-ttacctgc----
                       Gayal  ta-ttacctatatgt
               AmericanBison  ta-ttacctatatgt
                  LesserKudu  ta-ttgcctatatgt
                 CommonEland  ta-ttgcctatatgt
                     WildYak  ta-ttacctatatgt
                 DomesticYak  ta-ttacctatatgt
                 GreaterKudu  ta-ttgcctatatgt
                    Bushbuck  ta-ttgcctatatgt
                       Bongo  ta-ttgcctgtatgt
                      Impala  ta-ttacctgtatgt
                        Suni  ta-ttatgtgtatgt
                Klipspringer  ta-ttacctgtatgc
                WaterBuffalo  ta-ttacctatatgt
              AfricanBuffalo  ta-ttacctgtatgt
                   Sitatunga  ta-ttgcctgtatgt
                 NilgiriTahr  ta-ttacctgtatgt
B D                     ARS1  ta-ttacctgtatgt
                    WildGoat  ta-ttacctgtatgt
                SiberianIbex  ta-ttacctgtatgt
              AlpineMuskDeer  ta-ttacctgtatgt
       ChineseForestMuskDeer  ta-ttacctgtatgt
            SiberianMuskDeer  ta-ttacctgtatgt
                BlackMuntjac  ta-tcacctgtatgt
                MountainGoat  ta-ttacctgtatgt
                       Sheep  ta-ttacctgtatgt
             EuropeanMouflon  ta-ttacctgtatgt
              AsiaticMouflon  ta-ttacctgtatgt
                   SnowSheep  ta-ttacctgtatgt
                BighornSheep  ta-ttacctgtatgt
                BarbarySheep  ta-ttacctgtatgt
                      Bharal  ta-ttacctgtatgt
               IndianMuntjac  ta-tcacctgtatgt
               ReevesMuntjac  ta-tcacctgtatgt
              PereDavidsDeer  ta-ttacctgtatgt
             WhiteLippedDeer  ta-ttacctgtatgt
                 YarkandDeer  ta-ttacctgtatgt
                     RedDeer  ta-ttacctgtatgt
                     HogDeer  ta-ttacctgtatgt
             WhiteTailedDeer  ta-ttacctgtatgt
                    MuleDeer  ta-ttacctgtatgt
                    Reindeer  ta-ttacctgtatgt
              EasternRoeDeer  ta-ttacctgtatgt
              WesternRoeDeer  ta-ttacctgtatgt
                 EurasianElk  ta-ttacct------
            ChineseWaterDeer  ta-ttacctgtatgt
                       Okapi  ta-ttacctgtatgt
                     Giraffe  ta-ttacctgtatgt
                   Pronghorn  ta-ttacctgtatgt
               JavaMouseDeer  tg-ttacctgtatgt
                  ZebuCattle  ta-ttacctatatgt
                        Gaur  ta-ttacctatatgt
                    Steenbok  ta-ttacctgtatgt
          PrzewalskisGazelle  ta-ttacctgtatgt
               RoyalAntelope  ta-ttacctgtatgt
                 KirksDikDik  ta-ttacctgtatgt
                      Herola  ta-ttacctgtatgt
              MaxwellsDuiker  ta-ttacttgtatgt
               HarveysDuiker  ta-ttacctgtatgt
                       Oribi  ta-ttacctgtatgt
             ThomsonsGazelle  ta-ttacctatatgt
                     Gerenuk  ta-ttacctgtatgt
                       Saiga  ta-ttacctgtatgt
                   Springbok  ta-ttacctttatgt
               BohorReedbuck  ta-ttaactgtatgt
            DefassaWaterbuck  ta-ttaactgtatgt
                      Lechwe  ta-ttaactgtatgt
                     Gemsbok  ta-ttacctgtatgt
          ScimitarHornedOryx  ta-ttacttgtatgt
                RoanAntelope  ta-ttacctgcatat
               SableAntelope  ta-ttacctgcatat
              BlueWildebeest  ta-ttacctgtatgt
                        Topi  ta-ttacctgtatgt
         GreaterHorseshoeBat  ta-ttacctat----
     WesternEuropeanHedgehog  ta-ttacttgt----
                  HouseMouse  cg-ttacctat----
            ChineseTreeShrew  ta-ttacctgt----
                      Alpaca  tg-ttacttgc----
           WildBactrianCamel  tg-ttacttgc----
                ArabianCamel  tg-ttacttgc----
                  MinkeWhale  ta-ttacctgt----
                 KillerWhale  ta-ttacctgt----
                  SpermWhale  ta-ttacctgt----
              ChacoanPeccary  ta-ttacctgt----

Alignment block 31 of 179 in window, 6280201 - 6280305, 105 bps 
B D             ARS_UCD_addY  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                      Rabbit  ag---tatcaacgttgctcctggaagaaaatgtatttcctacaattcctct---t---tcggtaggct--
                       Horse  ag---tatctatattgcttctgaaagataatatatttcata-tattctttt---t---gcagtcagtt--
             ChinesePangolin  aa---tatctatattgcttttgaaaaataatgtactttatactattccttt---t---gcagtcagtc--
                       Human  ag---tatctacactgcttctgacagataacatatttcatacaattccttt---t---gcagtcagct--
                    Aardvark  ag---tatctccattgtttctgacagataatatatttcataccactccttt---tcacatagccag----
                   BlueWhale  ag---tatctacattgcttctggaagataatatacgtcataccattcctgt---t---gcaggcagtt--
     CommonBottlenoseDolphin  ag---tatctacattgcttctggaagataatatacgtcataccattcctgt---t---gcaggcagtt--
                 BelugaWhale  ag---tatctacattgcttctggaagataatatacgtcataccattcctgt---t---gcaggcagtt--
                         Pig  ag---tatccacattgcttatgaaggacaatatatttcataccattcctat---t---acaatcagtt--
              FloridaManatee  ag---tatctactttgcttctgaaagataatatatttcatactattccttt---t---tcatgcagat--
                       Gayal  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
               AmericanBison  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                  LesserKudu  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                 CommonEland  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                     WildYak  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                 DomesticYak  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                 GreaterKudu  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                    Bushbuck  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                       Bongo  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                      Impala  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                        Suni  ag---tatctatgttgtttctgaaagataatatgtttcata-tgtttctgt---t---gtggtcagtt--
                Klipspringer  ag---tatctatgttgtttctgaaagataatatgtttcata-tctttctgt---g---gcaggcagtt--
                WaterBuffalo  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
              AfricanBuffalo  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                   Sitatunga  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                 NilgiriTahr  ag---tatctatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
B D                     ARS1  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                    WildGoat  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                SiberianIbex  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
              AlpineMuskDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctga---t---gcagtcagtt--
       ChineseForestMuskDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctga---t---gcagtcagtt--
            SiberianMuskDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctga---t---gcagtcagtt--
                BlackMuntjac  ac---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
                MountainGoat  ag---tatctttgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                       Sheep  ag---tatctatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
             EuropeanMouflon  ag---tatctatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
              AsiaticMouflon  ag---tatctatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                   SnowSheep  ag---tatctatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                BighornSheep  ag---tatccatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                BarbarySheep  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                      Bharal  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
               IndianMuntjac  ac---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
               ReevesMuntjac  ac---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
              PereDavidsDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
             WhiteLippedDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
                 YarkandDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
                     RedDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
                     HogDeer  ag---tatctatgttgtttctgaaagataatatgtttcataccatttctgt---t---gcaggcagtt--
             WhiteTailedDeer  ag---tatctgtgttgtttctgaaagatagtatgtttcataccatttctgt---t---gcaggcagtt--
                    MuleDeer  ag---tatctgtgttgtttctgaaagatagtatgtttcataccatttctgt---t---gcaggcagtt--
                    Reindeer  ag---tatctgtgttgtttctgaaagatagtatgtttcatgccatttctgt---t---gcaggcagtt--
              EasternRoeDeer  ag---tatctgtgttgtttctgaaagatagtatgtttcataccatttctgt---t---gcaggcaatt--
              WesternRoeDeer  ag---tatctgtgttgtttctgaaagatagtatgtttcataccatttctgt---t---gcaggcaatt--
                 EurasianElk  -g---tatctgtgttgtttctgaaagatagtatgtttcataccatttctgt---t---gcaggcagtt--
            ChineseWaterDeer  ag---tatctgtgttgtttctgaaagatagtatgtttcataccatttctgt---t---gcaggcaatt--
                       Okapi  ag---tatctatgttgtttctgaaagataatatgtttcacaccatttctgt---t---gcagtcagtt--
                     Giraffe  ag---tatctatgctgtttctgaaagataatatgtttcacaccatttctgt---t---gcagtcagtt--
                   Pronghorn  gg---tatctatgttgtttctgaaagataatctgcttcataccatttctgt---t---gcagtcagtt--
               JavaMouseDeer  agtattatctatgttgtttctgaaagataatatatttcacaccattttcgt---t---gcagtcagtt--
                  ZebuCattle  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcaatt--
                        Gaur  ag---tacctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                    Steenbok  ag---tatctatgttgtttctgaaagatgatatgtttcata-tatttctgt---t---gcaatcagtt--
          PrzewalskisGazelle  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
               RoyalAntelope  ag---tatctgtgttgtttctgaaagataatatgtttccta-tatttctgt---t---gcagtcagtt--
                 KirksDikDik  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                      Herola  ag---tatctatgttgtttctgaaagatgatatgtttcata-tatttctgt---t---gcagtcagtt--
              MaxwellsDuiker  ag---tatctatgttgtttctgaaagataatatgttttgta-tatttctgt---t---gcagtcagtt--
               HarveysDuiker  ag---tatctatgttgtttctgaaagataatatgttttgta-tatttctgt---t---gcagtcagtt--
                       Oribi  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
             ThomsonsGazelle  ag---tatctatgttgtttctggaagataatatgtttcata-tatttctgt---t---gcagtcagct--
               GrantsGazelle  ag---catctatgttgtttctggaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                     Gerenuk  ag---tatctatgttgtttctggaagataatatgtttcatc-tatttctgt---t---gcagtcagtt--
                       Saiga  ag---tatctatgttgtttctggaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                   Springbok  ag---tatctatattgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
               BohorReedbuck  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
            DefassaWaterbuck  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                      Lechwe  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                     Gemsbok  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
          ScimitarHornedOryx  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
                RoanAntelope  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
               SableAntelope  ag---tatctatgttgtttctgaaagataatatgtttcata-tatttctgt---t---gcagtcagtt--
              BlueWildebeest  ag---tatctatgttgtttctgaaagatgatatgtttcata-tatttctgt---t---gcagtcagtt--
                        Topi  ag---tatctatgttgtttctgaaagatgatatgtttcata-tatttctgt---t---gcagtcagtt--
         GreaterHorseshoeBat  ag---tatctacattgcttctgaaagagaatatatttcagaccattccctt---t---gcagtt------
     WesternEuropeanHedgehog  ag---tatctacatggtttctaaaagataatata-ttcatgccacaccttcacaa---tcaatg------
                  HouseMouse  aa---ctgccacattgcttctgggagataatacatttcaggcagttcctgt---t---------------
            ChineseTreeShrew  ag---tagcagcattgcttctgaaagatcatatatagcacacaatttcttt---t---gcaatggtctcg
                      Alpaca  ag---tagctacatttcttctaaaagataatatatttcatatctttcctgt---t---gcagtcagtt--
           WildBactrianCamel  ag---tagctacatttcttctgaaagataatatatttcatatctttcctgt---t---gcagtcagtt--
                ArabianCamel  ag---tagctacatttcttctgaaagataatatatttcatatctttcctgt---t---gcagtcagtt--
                  MinkeWhale  ag---tatctaccttgcttctggaagataatatacgtcataccattcctgt---t---gcaggcagtt--
                 KillerWhale  ag---tatctacattgcttctggaagataatatacgtcataccattcctgt---t---gcaggcagtt--
                  SpermWhale  ag---tatctacattgcttctggaagataatatatgtcataccattcctgt---t---gcaggcagtt--
              ChacoanPeccary  ag---tatccacattgcttctgaaagacaatatatttcataccattcctat---t---gcaatcagtt--

                ARS_UCD_addY  --caaaccta-----ta----ctcaaggaaagggagac-aggcatc-tcaacagagaagg
                      Rabbit  --cgaaagaa-----tactttcacccggaaagggaaac-agacacc-ttgacagagaagg
                       Horse  --cataacta-----ca----ctcaaggaaagggagac-agacacc-ttcacagagaagg
             ChinesePangolin  --caaaacta-----ta----ctcaaggagagggagat-gggctcc-ttaacagagaagg
                       Human  --caaaagaa-----tactttctccaggaaagagaaac-aggcacc-ttgacagagaagg
                    Aardvark  ---aaaagaa-----tactttctcaaggaaaaggagac-aggcacc-ttaacagagaagg
                   BlueWhale  --caaaacta-----ta----ctcaaggaaagggggac-aggcacc-ttaacagagaagg
     CommonBottlenoseDolphin  --caaaacta-----ta----ctcaaggaaagtgggac-aggcacc-ttaacagagaagg
                 BelugaWhale  --caaaacta-----ta----ctcaaggaaagcgggac-aggcacc-ttaacagagaagg
                         Pig  --caaaagta-----ta----cacaaggaaagggagac-aggcacc-ttaacagagaagg
              FloridaManatee  --caaaaagaatacttt----ctcaaggaaaaggagac-aggcacc-ttaacagagaagg
                       Gayal  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
               AmericanBison  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                  LesserKudu  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                 CommonEland  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                     WildYak  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                 DomesticYak  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                 GreaterKudu  --caaaccta-----ca----ctcaagaaaagggagac-aggcacc-tcaacagagaagg
                    Bushbuck  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                       Bongo  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                      Impala  --caaagcta-----ta----ctcaaggaaagggagac-aggcacc-tcaacaggggaag
                        Suni  --caaaccta-----ta----ttcaaggaaagggaggc-aggtatc-tcaacagaggagg
                Klipspringer  --caaaccta-----ta----ctcaaggcaagggagac-aggcacc-tcaacagggaagg
                WaterBuffalo  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
              AfricanBuffalo  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                   Sitatunga  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                 NilgiriTahr  --caaacata-----ta----ctcaaggaaagggagat-aggcacc-tcaacagagaaag
                        ARS1  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                    WildGoat  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                SiberianIbex  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
              AlpineMuskDeer  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-ttaacagagaagg
       ChineseForestMuskDeer  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-ttaacagagaagg
            SiberianMuskDeer  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-ttaacagagaagg
                BlackMuntjac  --aaaaccta-----ta----ctcaaggaaagggagac-aggcacc-ctaacagagaagg
                MountainGoat  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                       Sheep  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
             EuropeanMouflon  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
              AsiaticMouflon  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                   SnowSheep  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                BighornSheep  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                BarbarySheep  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
                      Bharal  --caaacata-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaaag
               IndianMuntjac  --aaaaccta-----ta----ctcaaggaaagggagac-aggcacc-ctaacagagaagg
               ReevesMuntjac  --aaaaccta-----ta----ctcaaggaaagggagac-aggcacc-ctaacagagaagg
              PereDavidsDeer  --aaaaccta-----ta----ctcaaggaaagggagac-aggcacc-ctaacagagaagg
             WhiteLippedDeer  --aaaaccta-----ta----ctcaaggaaagggagac-gggcacc-ctaacagagaagg
                 YarkandDeer  --aaaaccta-----ta----ctcaaggaaagggagac-gggcacc-ctaacagagaagg
                     RedDeer  --aaaaccta-----ta----ctcaaggaaagggagac-gggcacc-ctaacagagaagg
                     HogDeer  --aaaaccta-----ta----ctcaaggaaagggagac-gggcacc-ctaacagagaagg
             WhiteTailedDeer  --aaaaccta-----ta----ctcaaggaaagggagaaggggcacc-ctaacagagaagg
                    MuleDeer  --aaaaccta-----ta----ctcaaggaaagggagaaggggcacc-ctaacagagaagg
                    Reindeer  --aaaaccta-----ta----ctcaaggaaagggagaaggggcacc-ctaacagagaagg
              EasternRoeDeer  --aaaaccta-----ta----cccaaggaaagggagaaggggcacc-ctaacagagaagg
              WesternRoeDeer  --aaaaccta-----ta----cccaaggaaagggagaaggggcacc-ctaacagagaagg
                 EurasianElk  --aaaattta-----ta----ctcaaggaaagggagaaggggcacc-ctaacagagaagg
            ChineseWaterDeer  --aaaaccta-----ta----ctcaaggaatgggagaaggggcacc-ctaacagagaagg
                       Okapi  --caaaccta-----ta----ctcaaggaaagggaggc-aggcacc-ttaagagagaagg
                     Giraffe  --caaaccta-----ta----ctcaaggaaagggaggc-aggcacc-ttaagagagaagg
                   Pronghorn  ---aaaccta-----ta----ctcagggaaacggaggc-aggcatc-ttaacagagaagg
               JavaMouseDeer  --caaaactc-----ta----ctca-ggaaagggagac-aggcacctttagcagagaagg
                  ZebuCattle  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                        Gaur  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                    Steenbok  --caaaccta-----ta----ctcaagggaagggagac-aggcacc-tcaacagagaagg
          PrzewalskisGazelle  --c-aaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
               RoyalAntelope  --caaaccta-----ta----ctc-aggaaagggagac-aggcacc-tcaacagagaagg
                 KirksDikDik  --caaaccta-----ta----ttcaaggaaagggagac-aggcacc-tccacagagaagg
                      Herola  --caaaccta-----ta----ctcaaggaaagggagat-aggcacc-tcaacagagaagg
              MaxwellsDuiker  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
               HarveysDuiker  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                       Oribi  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
             ThomsonsGazelle  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
               GrantsGazelle  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                     Gerenuk  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                       Saiga  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                   Springbok  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
               BohorReedbuck  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
            DefassaWaterbuck  --caaacctc-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                      Lechwe  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagagaagg
                     Gemsbok  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagggaagg
          ScimitarHornedOryx  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagggaagg
                RoanAntelope  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagggaagg
               SableAntelope  --caaaccta-----ta----ctcaaggaaagggagac-aggcacc-tcaacagggaagg
              BlueWildebeest  --caaaccta-----ta----ctcaaggaaagggagat-aggcacc-tcaacagagaagg
                        Topi  --caaaccta-----ta----ctcaaggaaagggagat-aggcacc-tcaacagagaagg
         GreaterHorseshoeBat  --taaaatta-----ta----gtcaagaaaagggagac-agggacc-ttaagagagaagg
     WesternEuropeanHedgehog  --caaaagct-----ta----ctcaagaaaagggagac-aggcacg-ttaacagagaagg
                  HouseMouse  ------tgag-----tt----ctccgaaaagcaa-gtc-aggtagc-cttagagagcagg
            ChineseTreeShrew  aaagaatact-----tt----ctccaggaaacggtgac-aggcacc-ttggaggagaagg
                      Alpaca  --gaaaacta-----ta----ctcaaggaaagggagac-aggcacc-ttaacagagaagg
           WildBactrianCamel  --gaaaacta-----ta----ctcaaggaaagggagac-aggcacc-ttaacagagaagg
                ArabianCamel  --gaaaacta-----ta----ctcaaggaaagggagac-aggcacc-ttaacagagaagg
                  MinkeWhale  --caaaacta-----ta----ctcaaggaaagggggac-aggcacc-ttaacagagaagg
                 KillerWhale  --caaaacta-----ta----ctcaaggaaagtgggac-aggcacc-ttaacagagaagg
                  SpermWhale  --caaaacta-----ta----ctcaaggaaagggggac-aggcacc-ttagcagagaagg
              ChacoanPeccary  --caaaacta-----ta----cacaaggaaagggagac-tggcacc-ttaacagagaagg

Alignment block 32 of 179 in window, 6280306 - 6280366, 61 bps 
B D             ARS_UCD_addY  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acaggcct
                      Rabbit  c--acggcaagaatgattttgagg-cca------tgtg----tctgtgatcttgctttaac-acagttct
                       Horse  c--atgacacggaaga-ttctgtg-cca------tgtg----tctgcgatcctgcttta-c-ccagtgct
             ChinesePangolin  c--atgacaaggaggg-ttttgtg-ccatgtgtctgtg----tctgtgatcttgcttta-c-atagtgct
                       Human  c--atggcaagaaaaa-ttttgtg-tta--------------cctgttatcttgctttaat-acaatgct
                    Aardvark  c--aggacaagaaaga-ttttgtg-cca--------------tgtgcctgcatgt-----t-gcagtgct
                   BlueWhale  c--atgacaagaaagagttttgtg-cca------tatg----tctgtgatcttgcttta-t-agagtgct
     CommonBottlenoseDolphin  c--atgacaagaaagagttttgtg-cca------tatg----tctgtgatcttgcttta-t-agagtggt
                 BelugaWhale  c--atgacaagaaagagttttgtg-cca------tatg----tctgtgatcttgcttta-t-agagtggt
                         Pig  c--atgacaagaaagatttttgtg-cca------tgtg----tctgtgattttgcttta-t-acagtgct
              FloridaManatee  c--ataagaagaaaga-ttttgtg-cca------tgtg----tctg------tgcttta-t-acagtgct
                       Gayal  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
               AmericanBison  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                  LesserKudu  c--atgaccagaaagagttttgtg-cca------tgtg----tctgtgatcttgcttta-t-acagggct
                 CommonEland  c--atgaccagaaagagttttgtg-cca------tgtg----tctgtgatcttgcttta-t-acagggct
                     WildYak  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                 DomesticYak  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                 GreaterKudu  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                    Bushbuck  c--atgaccagaaagagttttgtg-cca------tgtg----tctgtgatcttgcttta-t-acagggct
                       Bongo  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                      Impala  c--atgaccagaaagatctttgtg-ccg------tgtg----tctgcgatctggcttta-t-a-------
                        Suni  catatgaccagaaagacttttgtg-cca------tgtg----tctgtgatctggcttta-c-a-------
                Klipspringer  c--atgagcagaaagagttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
                WaterBuffalo  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
              AfricanBuffalo  c--atgaccagaaagagttttgtg-tca------tgtg----tctgcgatcttgcttta-t-acagggct
                   Sitatunga  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
               MountainNyala  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                 NilgiriTahr  c--atgaccaggaagatttttgtg-ccg------tgtg----tctgcgatctggcttta-t-g-------
B D                     ARS1  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
                    WildGoat  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
                SiberianIbex  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
              AlpineMuskDeer  t--atgacaagaaagatttttgtg-cca------tgtg----tctgtgatcttgcttta-t-acagggct
       ChineseForestMuskDeer  t--atgacaagaaagatttttgtg-cca------tgtg----tctgtgatcttgcttta-t-acagggct
            SiberianMuskDeer  t--atgacaagaaagatttttgtg-cca------tgtg----tctgtgatcttgcttta-t-acagggct
                BlackMuntjac  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
                MountainGoat  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
                       Sheep  c--atgaccaggaagatttttgtg-ccg------tgtg----tctgcgaactggcttta-t-g-------
             EuropeanMouflon  c--atgaccaggaagatttttgtg-ccg------tgtg----tctgcgaactggcttta-t-g-------
              AsiaticMouflon  c--atgaccaggaagatttttgtg-ccg------tgtg----tctgcgaactggcttta-t-g-------
                   SnowSheep  c--atgaccaggaagatttttgtg-ccg------tgtg----tctgcgaactggcttta-t-g-------
                BighornSheep  c--atgaccaggaagatttttgtg-ccg------tgtg----tctgcgaactggcttta-t-g-------
                BarbarySheep  c--atgaccagggaga-ttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
                      Bharal  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-g-------
               IndianMuntjac  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
               ReevesMuntjac  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
              PereDavidsDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
             WhiteLippedDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
                 YarkandDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
                     RedDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatgttgcttta-t-acagtgct
                     HogDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
             WhiteTailedDeer  c--atgacaagaaagatttttgtg-ccg------tgtgtctctctctgatcttgcttta-t-acagtgct
                    MuleDeer  c--atgacaagaaagatttttgtg-ccg------tgtgtctctctctgatcttgcttta-t-acagtgct
                    Reindeer  c--atgacaagaaagatttttgtg-cca------tgtgtctctctctgatcttgcttta-t-acagtgct
              EasternRoeDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
              WesternRoeDeer  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
                 EurasianElk  c--atgacaagaaagatttttgtg-cca------tgtg----tctctgatcttgcttta-t-acagtgct
            ChineseWaterDeer  c--atgaaaagaaagatttttgta-cca------tgtg----tctctgatcttgcttta-t-acagtgct
                       Okapi  c--atgacaagaaagatttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagtgct
                     Giraffe  c--atgacaagaaagatttttgtg-cca------cgtg----tctgcaatcttgcttta-t-acagtgct
                   Pronghorn  c--atgacaagaaagatttttatg-cca------tgtg----tctgtgatcttgcttta-t-acagtgct
               JavaMouseDeer  c--atgacaag-aagatttctgtgccca------tgtg----gctgtgatctttctgta-t-gcagtgct
                  ZebuCattle  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                        Gaur  c--atgaccagaaagagttttgtg-cca------tgtg----tctgcgatcttgcttta-t-acagggct
                    Steenbok  c--aggagcagaaagatttttgtg-cca------tgtg----tctgtgatctggcttta-t-ac------
          PrzewalskisGazelle  c--atgaacagaaagatttttgtg-cca------tgtg----tctgagatctggcttta-t-ac------
               RoyalAntelope  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatttggcttta-t-ac------
                 KirksDikDik  c--atgagcagaaagatttttgtg-cca------tgtg----tctgtgatctggcttta-t-ac------
                      Herola  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
              MaxwellsDuiker  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-ac------
               HarveysDuiker  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-ac------
                       Oribi  c--atgagcagaaagatttttgtg-cca------tgtg----tctgtgatctggcttta-t-ac------
             ThomsonsGazelle  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-ac------
               GrantsGazelle  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-ac------
                     Gerenuk  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcaatctggcttta-t-ac------
                       Saiga  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-ac------
                   Springbok  c--atgagcagaaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-ac------
               BohorReedbuck  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
            DefassaWaterbuck  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
                      Lechwe  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
                     Gemsbok  c--atgaccaggaagatttttgtg-cca------tatg----tctgcgatctggcttta-t-gc------
          ScimitarHornedOryx  c--atgaccaggaagatttttgtg-cca------tatg----tctgcgatctggcttta-t-gc------
                RoanAntelope  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
               SableAntelope  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
              BlueWildebeest  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
                        Topi  c--atgaccaggaagatttttgtg-cca------tgtg----tctgcgatctggcttta-t-gc------
         GreaterHorseshoeBat  c--atgacaagaaagattt-tgtg-cca------tgag----tctgtgatcttgcttta-c-acagtgct
     WesternEuropeanHedgehog  c--aagac----aagatct-tgtg-cca------agcg----tctgaaatcttgtttaa-a-acagggct
                  HouseMouse  c--agaacacgaaagatttctgtg-cca------tgtg----tctgagatcttgcttta-ataccatgct
            ChineseTreeShrew  c--atggcaagaaagattg-tata-cca------tgtg----tctgcaatcttgcttta-atacaatgct
                      Alpaca  c--atgacaagaaagatttttgtg-cca------tgtg----tctgtgatcttgcttta-t---------
           WildBactrianCamel  c--atgacaagaaagatttttgtg-cca------tgtg----tctgtgatcttgcttta-t---------
                ArabianCamel  c--atgacaagaaagatttttgtg-cca------tgtg----tctgtgatcttgcttta-t---------
                  MinkeWhale  c--atgacaagaaagagttttgtg-ccg------tatg----tctgtgatcttgcgtta-t-agagtgct
                 KillerWhale  c--atgacaagaaagagttttgtg-cca------tatg----tctgtgatcttgcttta-t-agagtggt
                  SpermWhale  c--atgacaagaaagagttttgtg-cca------tatg----tctgcgatcttgcttta-t-agagtggt
              ChacoanPeccary  c--atgacaagaaagatttttgtg-cca------cgtg----tctgtgatcttgcttta-t-acagtgct

                ARS_UCD_addY  ctaccc
                      Rabbit  ttgtaa
                       Horse  ttatct
             ChinesePangolin  ttatac
                       Human  ttatat
                    Aardvark  ttctac
                   BlueWhale  ttaccc
     CommonBottlenoseDolphin  ttaccc
                 BelugaWhale  ttaccc
                         Pig  ttaccc
              FloridaManatee  ttatgc
                       Gayal  ctaccc
               AmericanBison  ctaccc
                  LesserKudu  ctaccc
                 CommonEland  ctaccc
                     WildYak  ctaccc
                 DomesticYak  ctaccc
                 GreaterKudu  ctaccc
                    Bushbuck  ctaccc
                       Bongo  ctaccc
                      Impala  ctaccc
                        Suni  ctaccc
                Klipspringer  ctaccc
                WaterBuffalo  ctaccc
              AfricanBuffalo  ctaccc
                   Sitatunga  ctaccc
               MountainNyala  ctacct
                 NilgiriTahr  ctaccc
                        ARS1  ctaccc
                    WildGoat  ctaccc
                SiberianIbex  ctaccc
              AlpineMuskDeer  ctaccc
       ChineseForestMuskDeer  ctaccc
            SiberianMuskDeer  ctaccc
                BlackMuntjac  ctaccc
                MountainGoat  ctaccc
                       Sheep  ctaccc
             EuropeanMouflon  ctaccc
              AsiaticMouflon  ctaccc
                   SnowSheep  ctaccc
                BighornSheep  ctaccc
                BarbarySheep  ctaccc
                      Bharal  ctaccc
               IndianMuntjac  ctaccc
               ReevesMuntjac  ctaccc
              PereDavidsDeer  ctaccc
             WhiteLippedDeer  ctaccc
                 YarkandDeer  ctaccc
                     RedDeer  ctaccc
                     HogDeer  ctaccc
             WhiteTailedDeer  ctaccc
                    MuleDeer  ctaccc
                    Reindeer  ctaccc
              EasternRoeDeer  ctaccc
              WesternRoeDeer  ctaccc
                 EurasianElk  ctactc
            ChineseWaterDeer  ctacct
                       Okapi  ctaccc
                     Giraffe  ctaccc
                   Pronghorn  ctatcc
               JavaMouseDeer  tcaccc
                  ZebuCattle  ctaccc
                        Gaur  ctaccc
                    Steenbok  -taccc
          PrzewalskisGazelle  -taccc
               RoyalAntelope  -taccc
                 KirksDikDik  -taccc
                      Herola  -taccc
              MaxwellsDuiker  -taccc
               HarveysDuiker  -taccc
                       Oribi  -taccc
             ThomsonsGazelle  -taccc
               GrantsGazelle  -taccc
                     Gerenuk  -taccc
                       Saiga  -taccc
                   Springbok  -taccc
               BohorReedbuck  -taccc
            DefassaWaterbuck  -taccc
                      Lechwe  -taccc
                     Gemsbok  -taccc
          ScimitarHornedOryx  -taccc
                RoanAntelope  -taccc
               SableAntelope  -taccc
              BlueWildebeest  -taccc
                        Topi  -taccc
         GreaterHorseshoeBat  ttatac
     WesternEuropeanHedgehog  tcatac
                  HouseMouse  ttaaac
            ChineseTreeShrew  ttctac
                      Alpaca  ----cc
           WildBactrianCamel  ----cc
                ArabianCamel  ----cc
                  MinkeWhale  ttaccc
                 KillerWhale  ttaccc
                  SpermWhale  ttaccc
              ChacoanPeccary  ttatcc

Alignment block 33 of 179 in window, 6280367 - 6280373, 7 bps 
B D             ARS_UCD_addY  actttaa
                      Rabbit  gctttaa
                       Horse  actttaa
             ChinesePangolin  acttgga
                       Human  actttaa
                    Aardvark  actttaa
                   BlueWhale  actttaa
     CommonBottlenoseDolphin  actttaa
                 BelugaWhale  actttaa
                         Pig  actttaa
              FloridaManatee  attttaa
                       Gayal  actttaa
               AmericanBison  actttaa
                  LesserKudu  actttaa
                 CommonEland  actttaa
                     WildYak  actttaa
                 DomesticYak  actttaa
                 GreaterKudu  actttaa
                    Bushbuck  actttaa
                       Bongo  actttaa
                      Impala  actttag
                        Suni  actttag
                Klipspringer  actttag
                WaterBuffalo  actttaa
              AfricanBuffalo  actttaa
                   Sitatunga  actttaa
               MountainNyala  actttaa
                 NilgiriTahr  actttag
B D                     ARS1  actttag
                    WildGoat  actttag
                SiberianIbex  actttag
              AlpineMuskDeer  actttaa
       ChineseForestMuskDeer  actttaa
            SiberianMuskDeer  actttaa
                BlackMuntjac  actttaa
                MountainGoat  actttag
                       Sheep  actttag
             EuropeanMouflon  actttag
              AsiaticMouflon  actttag
                   SnowSheep  actttag
                BighornSheep  actttag
                BarbarySheep  actttag
                      Bharal  actttag
               IndianMuntjac  actttaa
               ReevesMuntjac  actttaa
              PereDavidsDeer  actttaa
             WhiteLippedDeer  actttaa
                 YarkandDeer  actttaa
                     RedDeer  actttaa
                     HogDeer  actttaa
             WhiteTailedDeer  actttaa
                    MuleDeer  actttaa
                    Reindeer  attttaa
              EasternRoeDeer  actttaa
              WesternRoeDeer  actttaa
                 EurasianElk  actttaa
            ChineseWaterDeer  gctttaa
                       Okapi  actttaa
                     Giraffe  acttaaa
                   Pronghorn  actttaa
               JavaMouseDeer  actttaa
             LesserMouseDeer  actttaa
                  ZebuCattle  actttaa
                        Gaur  actttaa
                    Steenbok  actttag
          PrzewalskisGazelle  actttag
               RoyalAntelope  actttag
                 KirksDikDik  actttag
                      Herola  actttag
              MaxwellsDuiker  actttag
               HarveysDuiker  actttag
                       Oribi  gctttag
             ThomsonsGazelle  gctttag
               GrantsGazelle  gctttag
                     Gerenuk  gctttag
                       Saiga  gctttag
                   Springbok  gctttag
               BohorReedbuck  actttag
            DefassaWaterbuck  actttag
                      Lechwe  actttag
                     Gemsbok  actttag
          ScimitarHornedOryx  actttag
                RoanAntelope  actttag
               SableAntelope  actttag
              BlueWildebeest  actttag
                        Topi  actttag
         GreaterHorseshoeBat  actttaa
     WesternEuropeanHedgehog  actttaa
                  HouseMouse  acttaaa
            ChineseTreeShrew  acattga
                      Alpaca  actttaa
           WildBactrianCamel  actttaa
                ArabianCamel  actttaa
                  MinkeWhale  actttaa
                 KillerWhale  actttaa
                  SpermWhale  actttaa
              ChacoanPeccary  actttaa

Alignment block 34 of 179 in window, 6280374 - 6280642, 269 bps 
B D             ARS_UCD_addY  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                      Rabbit  ac--tg--gactcaaaacagtttcatagtattg-t-ttccctt---------at----------------
                       Horse  ac--ag--ga--cacaacagtttcaaaatattg-t-tctcctt---------at----------------
             ChinesePangolin  ac--tg--gatttgaaatagtttcaaaatattg-t-tttcctt---------at----------------
                       Human  ac--aa--gactccaaacagttttaaaatatta-t-ttccctt---------at----------------
                    Aardvark  accaaa--ggctcaaaacagtttcaaaatactg-t-tttcctt---------at----------------
                   BlueWhale  ac--tg--gactcaaaacagtttcaaaatattg-t-ttttctt---------at----------------
     CommonBottlenoseDolphin  ac--tg--gactcaaaacagtttcaaaatactg-t-ttttctt---------at----------------
                 BelugaWhale  ac--tg--gactcaaaacagtttcaaaatactg-t-ttttctt---------at----------------
                         Pig  ac--ta--gactcaaaacagtttcaaaatatta-t-tcttctt---------at----------------
              FloridaManatee  ac--tgaaggctcaaaacagtttcaaaatactg-c-tttcctt---------at----------------
                       Gayal  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
               AmericanBison  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                  LesserKudu  ac--tg--gactcaaaacagtttcaaaataatg-ctttttttt---------at----------------
                 CommonEland  ac--tg--gactcaaaacagtttcaaaatactg-ctttttttt---------at----------------
                     WildYak  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                 DomesticYak  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                 GreaterKudu  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                    Bushbuck  ac--tg--gactcaaaacagtttcaaaatactg-ctttttttt---------at----------------
                       Bongo  ac--tg--gactcaaaacagtttcaaaatactg-cgttttctt---------at----------------
                      Impala  ac--tg--gactcaaaacagtttcaaaagactg--gttttctt---------at----------------
                        Suni  ac--tg--gactcaaaacagtttcagaagactg--gttttctt---------at----------------
                Klipspringer  ac--tg--gactcagaacagtctcaaaatactg--gttttctt---------at----------------
                WaterBuffalo  ac--tg--gactcaaaatagtttcaaaatactg-ctttttctt---------at----------------
              AfricanBuffalo  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                   Sitatunga  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
               MountainNyala  ac--tg--gactcaaaacagtttcaaaatactg-ctttttctt---------at----------------
                 NilgiriTahr  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
B D                     ARS1  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                    WildGoat  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                SiberianIbex  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
              AlpineMuskDeer  ac--tg--gactcaaaacagtttgaaaatactg-gtttttctt---------at----------------
       ChineseForestMuskDeer  ac--tg--gactcaaaacagtttgaaaatactg-gtttttctt---------at----------------
            SiberianMuskDeer  ac--tg--gactcaaaacagtttgaaaatactg-gtttttctt---------at----------------
                BlackMuntjac  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
                MountainGoat  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                       Sheep  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
             EuropeanMouflon  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
              AsiaticMouflon  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                   SnowSheep  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                BighornSheep  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                BarbarySheep  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                      Bharal  ac--tg--gactcagaacagtttctaaatactg-g-ttttctt---------at----------------
               IndianMuntjac  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
               ReevesMuntjac  ac--tg--gactcaaaacagtttcaaagtactg-gtttttctt---------ac----------------
              PereDavidsDeer  ac--tg--gactcaaaacagtttcaaaagactg-gtttttctt---------ac----------------
             WhiteLippedDeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
                 YarkandDeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
                     RedDeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
                     HogDeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
             WhiteTailedDeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
                    MuleDeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
                    Reindeer  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
              EasternRoeDeer  ac--tg--gactcaaaacagtttcaaaatattg-gtttttctt---------actaggttataactaggt
              WesternRoeDeer  ac--tg--gactcaaaacagtttcaaaatattg-gtttttctt---------actaggttataactaggt
                 EurasianElk  ac--tg--gactcaaaacagtttcaaaatactg-gtttttctt---------ac----------------
            ChineseWaterDeer  ac--tg--gactcaaaacagtttcaaaatattg-gtttttctt---------ac----------------
                       Okapi  ac--tg--ggctcaaaacagtttcaaaatactg-ggttttctt---------at----------------
                     Giraffe  ac--tg--ggctcaaaacagtttcaagatactg-gattttctt---------at----------------
                   Pronghorn  ac--tg--gactcaaaacagtttcaaaatactggt-ttttctt---------at----------------
               JavaMouseDeer  ac--tg--gactc-aaacagtttcaaaatact-gt-ttttctt---------at----------------
             LesserMouseDeer  ac--tg--gactc-aaacagtttcaaaatactg-t-ttttctt---------at----------------
                  ZebuCattle  ac--tg--gactcaaaacagtttcaaaatactgct-ttttctt---------at----------------
                        Gaur  ac--tg--gactcaaaacagtttcaaaatactgct-ttttctt---------at----------------
                    Steenbok  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
          PrzewalskisGazelle  ac--tg--gactcagaaccgtttcaaaatactg-g-ttttctt---------at----------------
               RoyalAntelope  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                 KirksDikDik  ac--tg--gactcagaacagtgtcaaagtactg-g-ttttctt---------at----------------
                      Herola  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
              MaxwellsDuiker  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
               HarveysDuiker  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                       Oribi  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
             ThomsonsGazelle  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
               GrantsGazelle  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                     Gerenuk  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                       Saiga  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                   Springbok  at--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                CommonDuiker  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
               BohorReedbuck  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
            DefassaWaterbuck  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                      Lechwe  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                     Gemsbok  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
          ScimitarHornedOryx  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                RoanAntelope  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
               SableAntelope  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
              BlueWildebeest  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
                        Topi  ac--tg--gactcagaacagtttcaaaatactg-g-ttttctt---------at----------------
         GreaterHorseshoeBat  ac--tg--gacttgaagcagtttcaaaatactg-t-tttcct----------tc----------------
     WesternEuropeanHedgehog  ac--tg--gacatacaacagctttaaaatactg-c-tttcccctcttacagatt----------------
                  HouseMouse  ac--ca--gacatgacacagtttcaaacca------gcccttt---------cc----------------
            ChineseTreeShrew  ac--ca--aactagaaacagtttcaaaatactg-t-tttcttt---------at----------------
                      Alpaca  ac--tg--gacacaaaatagtttcaaagtattg-t-ctttctt---------at----------------
           WildBactrianCamel  ac--tg--gacacaaaacagtttcaaagtattg-t-ctttctt---------at----------------
                ArabianCamel  ac--tg--gacacaaaacagtttcaaagtattg-t-ctttctt---------at----------------
                  MinkeWhale  ac--tg--gactcaaaacagtttcaaaatattg-t-ttttctt---------at----------------
                 KillerWhale  ac--tg--gactcaaaacagtttcaaaatactg-t-ttttctt---------at----------------
                  SpermWhale  ac--tg--gactcaaaacagtttcaaaatattg-t-ttttctt---------at----------------
              ChacoanPeccary  ac--tg--gaatcaaaacagtttggaaatattg-t-tcttctt---------at----------------

                ARS_UCD_addY  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                      Rabbit  tcag-------taatcagattacagtgcaacaaataattttcctttaagaatttcctaccaaatagtgct
                       Horse  taag-------taatcaggttataatgcaccaaataattttcctttatgactctgctatcaaatagtcct
             ChinesePangolin  tgag-------caagcaggctataatgcaacaaataatttttcttgaagtctctgctatcagatagtcct
                       Human  taag-------taatcaggttacaatgcagcaaagaatttccatttaagactctgctatcaaataggtct
                    Aardvark  taag-------caatcaggttataatgcaataaataatttttctttaagacactgctatcatatagaact
                   BlueWhale  taag-------taattaggttataatgcaatgaataattttcctttaagactgtgctatcagataatcct
     CommonBottlenoseDolphin  taag-------taattaggttataatgcaacgaataattttcctttaagactgtgctatcagataatcct
                 BelugaWhale  taag-------taattaggttataatgcaacgaataattttcctttaagactgtgctatcagataatcct
                         Pig  taag-------taattaggctataatgcaacaaataatttttcttgaaaactatgctatcagataatcct
              FloridaManatee  taag-------cagtcaggttacaatgcaacaaatagttttcctttaagaccctgccatcaaatagtcct
                       Gayal  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
               AmericanBison  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                  LesserKudu  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                 CommonEland  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                     WildYak  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                 DomesticYak  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                 GreaterKudu  taag-------taactaggttataaggcaataaataaatttcctttaagactgtgctatcagataatcct
                    Bushbuck  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                       Bongo  taag-------taactaggttataaggcaataaataaatttcctttaagactatgctatcagataatcct
                      Impala  taag-------taactgggttataaggcaacaaataaatttcctttaagactatgctatcagataatcct
                        Suni  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                Klipspringer  taag-------taactaggttataaggcaaggaataaattttccttaagactgtgctctcagataatcct
                WaterBuffalo  taag-------taactaggttataaggcaacaaataagtttcctttaagactgtgctatcagataatcct
              AfricanBuffalo  taag-------taactaggttataaggcaacaaataagtttcctttaagactgtgctatcagataatcct
                   Sitatunga  taag-------taactaggttataaggcaataaataaatttcctttaagactatgctatcagattatcct
               MountainNyala  taag-------taactaggttataaggcaataaataaatttcctttaagactatgctatcagataatcct
                 NilgiriTahr  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                        ARS1  ttag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcca
                    WildGoat  ttag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcca
                SiberianIbex  ttag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcca
              AlpineMuskDeer  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
       ChineseForestMuskDeer  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
            SiberianMuskDeer  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                BlackMuntjac  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
                MountainGoat  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                       Sheep  taag-------taactaggttataaggcaacaaacaaatttcctttaagactgtgctatcagataatcct
             EuropeanMouflon  taag-------taactaggttataaggcaacaaacaaatttcctttaagactgtgctatcagataatcct
              AsiaticMouflon  taag-------taactaggttataaggcaacaaacaaatttcctttaagactgtgctatcagataatcct
                   SnowSheep  taag-------taactaggttataaggcaacaaacaaatttcctttaagactgtgctatcagataatcct
                BighornSheep  taag-------taactaggttataaggcaacaaacaaatttcctttaagactgtgctatcagataatcct
                BarbarySheep  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                      Bharal  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
               IndianMuntjac  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
               ReevesMuntjac  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
              PereDavidsDeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
             WhiteLippedDeer  taag-------taactaggttataaggcaacaaatagatttccttt-ggactgtgctatcggataatcct
                 YarkandDeer  taag-------taactaggttataaggcaacaaatagatttccttt-ggactgtgctatcggataatcct
                     RedDeer  taag-------taactaggttataaggcaacaaatagatttccttt-ggactgtgctatcggataatcct
                     HogDeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
             WhiteTailedDeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
                    MuleDeer  taac-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
                    Reindeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
              EasternRoeDeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
              WesternRoeDeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
                 EurasianElk  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
            ChineseWaterDeer  taag-------taactaggttataaggcaacaaatagatttcctttaggactgtgctatcagataatcct
                       Okapi  taag-------taactaggttataaggcaacaaatgaatttcctttaagactgtgctatcagataatcct
                     Giraffe  taag-------taactaggttataaggcaacaaatgaatttcctttaagactgtgctatcagataatcct
                   Pronghorn  taag-------taactaggttatcaggcaacaaataaatttcctttaagactgcgctctcagataatcct
               JavaMouseDeer  taag-------taattaggttataaggcaacagataattttcctttaagactgtgctatcagataatcct
             LesserMouseDeer  taag-------taattaggttataaggcaacagataattttcctttaagactgtgctatcagataatcct
                  ZebuCattle  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                        Gaur  taag-------taactagtttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                    Steenbok  taag-------taactaggttgtaaggcaacaaataaatttcctttaagactgtgctatcagataattct
          PrzewalskisGazelle  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataattct
               RoyalAntelope  gaag-------taactaggttataaggcaacaaataaattttttttaagactgtgctatcagataatcct
                 KirksDikDik  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataattct
                      Herola  taag-------taaataggttataaggcaacaaataaatttcctttaagactgtgctattagataatcct
              MaxwellsDuiker  taag-------taactagattataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
               HarveysDuiker  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                       Oribi  taag-------taactaggttacaaggcaacaaataaatttcctttaagactgtgctatcagataattct
             ThomsonsGazelle  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataattct
               GrantsGazelle  taag-------taactaggttataaggcaacaaataaatttcctttaagaccgtgctatcagataattct
                     Gerenuk  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataattct
                       Saiga  taaa-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataattct
                   Springbok  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataattct
                CommonDuiker  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
               BohorReedbuck  taag-------tgactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
            DefassaWaterbuck  taag-------tgactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                      Lechwe  taag-------tgactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                     Gemsbok  caag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctctcagataatcct
          ScimitarHornedOryx  caag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctctcagataatcct
                RoanAntelope  caag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctctcagataatcct
               SableAntelope  caagctgatcttatctaggttataaggcaacaaataaatttcctttaagactgtgctctcagataatcct
              BlueWildebeest  taag-------taactaggttataaggcaacaaataaatttcctttaagactgtgctatcagataatcct
                        Topi  taag-------taaataggttataaggcaacaaataaatttccttgaagactgtgctattagataatcct
         GreaterHorseshoeBat  taag-------taagcaa------------caaataattttcctttaagaccctg-tctcagatagtcct
     WesternEuropeanHedgehog  taaa-------ttataaagt----------cacacaa-tttcctttaagactctgctgtcaaatagtcct
                  HouseMouse  taag-------cggtcaggttacgatacagcagataattttcatttatgactcttggatcaaacagttca
            ChineseTreeShrew  taag-------taatcaggttacagtgtaacatataatttggatttaggactctgccatcaagtagttct
                      Alpaca  taag-------taattaggttataatgcaacaaataattttcctttaagactgtgctatca-atagtcct
           WildBactrianCamel  taag-------taattaggttataatgcaacaaataattttcctttaagactgtgctatcagatagtcct
                ArabianCamel  taag-------taattaggttataatgcaacaaataattttcctttaagactgtgctatcagatagtcct
                  MinkeWhale  taag-------taattaggttataatgcaacgaataattttcctttaagactgtgctatcagataatcct
                 KillerWhale  taag-------taattaggttataatgcaacgaataattttcctttaagactgtgctatcagataatcct
                  SpermWhale  taag-------taattaggttataatgcaacgaataattttcctgtacgactgtgctatcagataatcct
              ChacoanPeccary  taag-------taattaggctatgatgcaacaaataatttttcttgaagactgtgctatcagataatcct

                ARS_UCD_addY  ggaatagatttgccttacttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                      Rabbit  ggagtagattgaccttatttatcaatgattt---tt-gaaagcca-----aaagaa--tttgtt-catgc
                       Horse  ggagtagatttaccttatttataaacaatct---tg-gggaaccaaaataaaagaa--attgct-agtga
             ChinesePangolin  ggagtagatttgccttacttatagataatct---tg-gaaaaccaaaaggaaataa--attgc--agggc
                       Human  ggagcagatttacct--tttatagacaattt---tg-gaaaaccaaaataaaagaa--attgtt-agtgc
                    Aardvark  gtagaagattcaccttatttacagacaaatt---tg-gaaaattaaaagaaaagaa--attgct-aatgt
                   BlueWhale  ggagtagatttgccttatttataaacaatct---tg-gaaaaccaaaaggaaagaa--atttctaagtgc
     CommonBottlenoseDolphin  ggagtagatctgccttatttataaacaatct---tg-gaaaaccaaaaggaaagaa--atttctaagtgc
                 BelugaWhale  ggagtagatttgccttatttataaacaatct---tg-gaaaaccaaaaggaaagaa--atttctaagtgc
                         Pig  agagtagatttgccttatttataaacaatct---tg-gaaaaccaaaaggaaagct--gtttctaaatgc
              FloridaManatee  gtagtagatttgccttatttgcagacaaatt---ta-gaaaatcaaaaggaaagga--attgtt-agtgt
                       Gayal  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
               AmericanBison  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                  LesserKudu  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                 CommonEland  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                     WildYak  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                 DomesticYak  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                 GreaterKudu  ggaatagatttgccttatttataaacaatct---tgaggaaacaaaaaggcaagaa--attgctaagtgc
                    Bushbuck  ggaataaatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                       Bongo  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                      Impala  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                        Suni  ggaatagatctgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                Klipspringer  gggatagatctgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                WaterBuffalo  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              AfricanBuffalo  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                   Sitatunga  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
               MountainNyala  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                 NilgiriTahr  ggaatagatttgccttatttataaacaatct---tgagaaattaaaaaggcaagaa--attgctaagtgc
                        ARS1  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                    WildGoat  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                SiberianIbex  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              AlpineMuskDeer  ggaatagatttgcctcatttataaacaatct---tgagaaaacaaaatggcaagaa--attgctaagtgc
       ChineseForestMuskDeer  ggaatagatttgcctcatttataaacaatct---tgagaaaacaaaatggcaagaa--attgctaagtgc
            SiberianMuskDeer  ggaatagatttgcctcatttataaacaatct---tgagaaaacaaaatggcaagaa--attgctaagtgc
                BlackMuntjac  ggaatagatttgccttatttatacacaatct---tgagaaaacaaaaaggcaagga--attgctaagtgc
                MountainGoat  gggatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                       Sheep  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
             EuropeanMouflon  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              AsiaticMouflon  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                   SnowSheep  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                BighornSheep  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                BarbarySheep  ggaatagatttgcctcattgataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                      Bharal  ggaatagatctgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
               IndianMuntjac  ggaatagatttgccttatttatacacaatct---tgagaaaacaaaaaggcaagga--attgctaagtgc
               ReevesMuntjac  ggaatagatttgccttatttatacacaatct---tgagaaaacaaaaaggcaagga--attgctaagtgc
              PereDavidsDeer  gggatagatttgccttatttataaaccatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
             WhiteLippedDeer  gggatagatttgccttatttataaaccatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                 YarkandDeer  gggatagatttgccttatttataaaccatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                     RedDeer  gggatagatttgccttatttataaaccatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                     HogDeer  gggatagatttgccttatttataaaccatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
             WhiteTailedDeer  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                    MuleDeer  ggaatagatgtgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--atggctaagtgc
                    Reindeer  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              EasternRoeDeer  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              WesternRoeDeer  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                 EurasianElk  ggaatagacttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
            ChineseWaterDeer  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                       Okapi  ggaatagatctgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                     Giraffe  ggaatagatttgccttatttataaacgatct---tgagagaacaaaaaggcaagaa--attgctaagtgc
                   Pronghorn  ggaatagatttgccttatttgtaaacaatct---tgagaagacaaaaagacaagaa--attgctaagagc
               JavaMouseDeer  ggtatagatttgcctgatgtataaataatct---tgggaaaacaaaaaggcaagaa--actgctaagtgc
             LesserMouseDeer  ggtatagatttgcctgatttataaataatct---tgggaaaacaaaaaggcaagaa--actgctaagtgc
                  ZebuCattle  ggaatagatttgccttatttataaacaatct---tgagaaaacaaataggcaagaa--attgctaagtgc
                        Gaur  ggaatagatttgccttacttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                    Steenbok  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
          PrzewalskisGazelle  ggaagagatttgccttatgtataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
               RoyalAntelope  gggatagatttgccttatttataaacaatct---tgaggaaacaaaaaggcaagaa--attgctaagtgc
                 KirksDikDik  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
                      Herola  ggaatagagttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              MaxwellsDuiker  ggaatagatttgccttatttataaaccatct---tgagaaaacaaaaa-gcaagaa--attgctaagtgc
               HarveysDuiker  ggaatagatttgccttatttataaaccatct---tgagaaaacaaaaa-gcaagaa--attgctaagtac
                       Oribi  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
             ThomsonsGazelle  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
               GrantsGazelle  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
                     Gerenuk  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
                       Saiga  ggaatagatttgccttctttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
                   Springbok  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaatgcaagaa--attgctaagtgc
                CommonDuiker  ggaatagatttgccttatttataaaccatct---tgagaaaacaaaaa-gcaagaa--attgctaagtgc
               BohorReedbuck  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
            DefassaWaterbuck  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                      Lechwe  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                     Gemsbok  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
          ScimitarHornedOryx  ggaatagctttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                RoanAntelope  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
               SableAntelope  ggaatagatttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
              BlueWildebeest  ggaatagagttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
                        Topi  ggaatagagttgccttatttataaacaatct---tgagaaaacaaaaaggcaagaa--attgctaagtgc
         GreaterHorseshoeBat  ggagaagattttccttatttataaacaatct---tggaaaaaccaagagg-aaagaa-atttctaagtgc
     WesternEuropeanHedgehog  gtaattgcttcaccttactgatttataagctctacaagaacaccaaaatg-ca---------ctgagtgt
                  HouseMouse  ggaaaaagtctcccttatttacatg-gggtt---tggaaaagc---------------aattgttagtgc
            ChineseTreeShrew  ggagtagctttatcttatttgtagacaattt---tggaaaagcaaaggga-aagaagaaattgtaagtgc
                      Alpaca  ggagtagatctgccttatttataaacagtca---tggaaaaccaaaagga-aagaa--atttctaagtgt
           WildBactrianCamel  ggagtagatctgccttatttataaataatca---tggaaaaccaaaagga-aagaa--atttttaagtgt
                ArabianCamel  ggagtagatctgccttatttataaataatca---tggaaaaccaaaagga-aagaa--atttttaagtgt
                  MinkeWhale  ggagtaggtttgccttctttataaacaatct---tggaaaaccaaaagga-aagaa--atttctaagtgc
                 KillerWhale  ggagtagatctgccttatttataaacaatct---tggaaaaccaaaagga-aagaa--atttctaagtgc
                  SpermWhale  ggagtagatttgccttatttataaacaatct---tggaaaaccaaaagga-aagaa--atttctaagtgc
              ChacoanPeccary  agagtagatttgccttatttataaacaatct---tggaaaaccaaaagga-aagtg--gtttctaagtgt

                ARS_UCD_addY  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                      Rabbit  ttgtctttagaatgacagctcagacataaaggca---------aacttttgagacagcctgaatataaca
                       Horse  ttttgctcacaatgacagcctggctctaaagacagtattttctaacttttgagatagcctgaatataaca
             ChinesePangolin  ttctgtttgtaatgacagcctgaccctaaagataacattttctaacttttgagaaagccaaaatccaaca
                       Human  ttgtgcttac-atgacagcctggccctaaagacaatactttcgaacttttcagatagcctgaatataaca
                    Aardvark  ctctgcttgcaatgatagcatgggcctaaagacagaactttctaactactaaga-atctcgaatgtaaca
                   BlueWhale  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgagagagcctgaacgcaaca
     CommonBottlenoseDolphin  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagttttgagatagcctgaatgcaaca
                 BelugaWhale  ttctgcttacaatgacagcctggccctaaaggcagtgttttctaagttttgagatagcctgaatgcaaca
                         Pig  ttctgcttacaatgacagcatggccttaa---caatgttttctaagttttgagatagcctgaatgcaaca
              FloridaManatee  ctctgcttacaatgacagcctgattctaaaaacaatactttctaacttttgagctatcttgaata-aaca
                       Gayal  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
               AmericanBison  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                  LesserKudu  ttctgcttacaatgacagcctggctctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                 CommonEland  ttctgcttacaatgacagcctggctctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                     WildYak  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                 DomesticYak  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                 GreaterKudu  ttctgcttacaatgacagcctggctctaaagacaatgttttctaagttttgaaacagcttgaaaacaaca
                    Bushbuck  ttctgcttacaatgacagcctggctctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                       Bongo  ttctgcttacaatgacagcctggctctaaagacaatgttttctaaattttgaaacagcttgaatacaaca
                      Impala  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacggcttgaatataaca
                        Suni  ttctgcttaccatgacagcctgtccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                Klipspringer  ttctgcttacagtgagagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                WaterBuffalo  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
              AfricanBuffalo  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                   Sitatunga  ttctgcttacaatgacagcctggctctaaagacaatgttttctaaattttgaaacagcttgaatacaaca
               MountainNyala  ttctgcttacaatgacagcctggctctaaagacaatgttttctaaattttgaaacagcttgaatacaaca
                 NilgiriTahr  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                        ARS1  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                    WildGoat  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                SiberianIbex  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
              AlpineMuskDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttttaaacagcttgaacacaaca
       ChineseForestMuskDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttttaaacagcttgaacacaaca
            SiberianMuskDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttttaaacagcttgaacacaaca
                BlackMuntjac  ttctgcttccaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                MountainGoat  ttctgcttacaatgacagtctgaccctaaagacaatgttttctaggttttgaaacagcttgaatacaaca
                       Sheep  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
             EuropeanMouflon  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
              AsiaticMouflon  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                   SnowSheep  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                BighornSheep  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                BarbarySheep  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaaca
                      Bharal  ttctgcttacaatgacagtctgaccctaaagacagtgttttctaggttttgaaacagcttgaatacaacg
               IndianMuntjac  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagttttgaaatagcttgaatacaaca
               ReevesMuntjac  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagttttgaaatagcttgaatacaaca
              PereDavidsDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
             WhiteLippedDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                 YarkandDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                     RedDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                     HogDeer  ttctgcttacaatgacagcctggctctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
             WhiteTailedDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagtttgaatacaaca
                    MuleDeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttcaaatagtttgaatacaaca
                    Reindeer  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagtttgaatacaaca
              EasternRoeDeer  ttatgcttac-atgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
              WesternRoeDeer  ttatgcttac-atgacagcctggccctaaagacaatgttttgtaagttttgaaatagcttgaatacaaca
                 EurasianElk  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagttttgaaatagcttgaatacaaca
            ChineseWaterDeer  ttctgcttac-ttgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                       Okapi  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                     Giraffe  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
                   Pronghorn  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaatagcttgaatacaaca
               JavaMouseDeer  ttctacttacaatgacagcctggccctaaagacaatgttttttcggttttgaaatagtttgaatataaca
             LesserMouseDeer  ttctacttacaatgacagcctggccctaaagacaatgttttttcggttttgaaatagtttgaatataaca
                  ZebuCattle  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                        Gaur  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                    Steenbok  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttagaaacagcttgaatacaaca
          PrzewalskisGazelle  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagtttggaaacagcttgaatacaaca
               RoyalAntelope  ttctgcttacaatgacagcctggccctaaagacaatgttttct--gtttggaaacagcttgaatacaaca
                 KirksDikDik  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgcatacaaca
                      Herola  ttctgcttacaatgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
              MaxwellsDuiker  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
               HarveysDuiker  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                       Oribi  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
             ThomsonsGazelle  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
               GrantsGazelle  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                     Gerenuk  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                       Saiga  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                   Springbok  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaatacaaca
                CommonDuiker  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagtttggaaacagcttgaacacaaca
               BohorReedbuck  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
            DefassaWaterbuck  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                      Lechwe  ttctgcttacaatgacagcctggccctgaagacaatgttttctaagttttgaaacagcttgaatacaaca
                     Gemsbok  ttctgcttacaatgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
          ScimitarHornedOryx  ttctgcttacaatgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                RoanAntelope  ttctgcttacaatgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
               SableAntelope  ttctgcttacaatgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
              BlueWildebeest  ttctgcttacagtgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
                        Topi  ttctgcttacaatgacagtctggccctaaagacaatgttttctaagttttgaaacagcttgaatacaaca
         GreaterHorseshoeBat  ttctgcttacactgacagcctggcacgaaagacagtattttctaaattttgagatagtctgaatgtaaca
     WesternEuropeanHedgehog  tcctgcttaca-----agtctccccagaaagccctgaagttctagcttttcagatagcctgaatataact
                  HouseMouse  -tgaacttgcagtgagaggctggccccaaggccactgctttctgattttttagatagcttgagcatgacc
            ChineseTreeShrew  ttgtactttcagc------ctggccctcaagacaatgctttttaacttttgagaaggcctaaatataaca
                      Alpaca  ttctccttacaatgacagcctgcccctaaagacaatgttctctaacttttaagatagcctgaatgcgaca
           WildBactrianCamel  ttctccttacaatgacagcctgcccctaaagacaatgttctctaacttttgagatagcctgaatgcgaca
                ArabianCamel  ttctccttacaatgacagcctgcccctaaagacaatgttctctaacttttgagatagcctgaatgcgaca
                  MinkeWhale  ttctgcttacaatgacagcctggccctaaagacaatgttttctaagttttgagagagcctgaatgcaaca
                 KillerWhale  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagttttgagatagcctgaatgcaaca
                  SpermWhale  ttctgcttacaatgacagcctggccctaaagacagtgttttctaagttttgagatagcctgaatgcaaca
              ChacoanPeccary  ttctgcttacaatgacagcatggcctta---acaatgttttctaagttttgagatagcctgaatgcaaca

                ARS_UCD_addY  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                      Rabbit  tc-a---aac-ttctctcctaattact----tgc------------
                       Horse  ttca---aat-ttttgtgctaattact----tgc------------
             ChinesePangolin  ttta---aatgttttgtactaattacc----tac------------
                       Human  tcaa---aat-ttttgtgttaattatc----tgc------------
                    Aardvark  gcta---cac-ttttgtgataattacc----tgc------------
                   BlueWhale  ttta---gat-tttggtgctacttacc----tgc------------
     CommonBottlenoseDolphin  ttta---gat-tttggtgctacttacc----tgc------------
                 BelugaWhale  ttta---gat-tttggtgctacttacc----tgc------------
                         Pig  ttta---aat-tctggtgctaagtgcc----ttc------------
              FloridaManatee  gcta---tat-ttttgtgataattacc----tac------------
                       Gayal  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
               AmericanBison  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                  LesserKudu  tcta---agt-tttggtgctaattacc----tgct-a---g---gt
                 CommonEland  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                     WildYak  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                 DomesticYak  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                 GreaterKudu  tcta---agt-tttggtgctaattacc----tgct-a---g-tttt
                    Bushbuck  tcta---agt-tttggtgctaattacc----tgct-a---gttttt
                       Bongo  tcta---agt-ttcggtgctaattacc----tgct-a---g---tt
                      Impala  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                        Suni  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                Klipspringer  tcta---aat-tttggtgctaattacc----tgct-a---g----t
                WaterBuffalo  tcta---agt-tttggtgctaattacc----tgct-a---g---tg
              AfricanBuffalo  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                   Sitatunga  tcta---agt-ttcggtgctaattacc----tgct-a---g---tt
               MountainNyala  tcta---agt-ttcggtgctaattacc----tgct-a---g---tt
                 NilgiriTahr  tcga---aat-tttggtgccaattacc----tgct-a---g---tt
                        ARS1  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
                    WildGoat  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
                SiberianIbex  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
              AlpineMuskDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
       ChineseForestMuskDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
            SiberianMuskDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                BlackMuntjac  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                MountainGoat  ccta---aat-tttggtgccaattacc----cgct-a---g---tt
                       Sheep  tcga---aat-tttggtgccaattacc----tgct-a---g---tt
             EuropeanMouflon  tcga---aat-tttggtgccaattacc----tgct-a---g---tt
              AsiaticMouflon  tcga---aat-tttggtgccaattacc----tgct-a---g---tt
                   SnowSheep  tcga---aat-tttggtgccaattacc----tgct-a---g---tt
                BighornSheep  tcga---aat-tttggtgccaattacc----tgct-a---g---tt
                BarbarySheep  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
                      Bharal  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
               IndianMuntjac  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
               ReevesMuntjac  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
              PereDavidsDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
             WhiteLippedDeer  tcta---aat-tttggtgctaattacc----tgct-a---g-----
                 YarkandDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                     RedDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                     HogDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
             WhiteTailedDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                    MuleDeer  tcta---aat-tttggtgctaattacc----tgct-a---gtttt-
                    Reindeer  tcta---aat-tttggtgctaattacc----tgct-a---g--tt-
              EasternRoeDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---t-
              WesternRoeDeer  tcta---aat-tttggtgctaattacc----tgct-a---g-----
                 EurasianElk  tcta---aat-tttggtgctaattacc----tgct-a---g---t-
            ChineseWaterDeer  tcta---aat-tttggtgctaattacc----tgct-a---g---t-
                       Okapi  tctg---aat-tttggtgctaattacc----tgct-a---g-----
                     Giraffe  tctg---aat-tttggtgctaattacc----tgct-a---g---t-
                   Pronghorn  tcta---aat-tttggtgctaattacctgctagtt-tgttg---tt
               JavaMouseDeer  tcta---aat-tttggtgctaattacc----aggt-t-ttg---tt
             LesserMouseDeer  tcta---aat-tttggtgctaattacc----aggt-----t---tt
                  ZebuCattle  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                        Gaur  tcta---agt-tttggtgctaattacc----tgct-a---g---tt
                    Steenbok  tcta---aat-tttggtgataattacc----tgct-a---g---tt
          PrzewalskisGazelle  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
               RoyalAntelope  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                 KirksDikDik  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                      Herola  tcta---aat-tttggtgctaattacc-----act-a---g---tt
              MaxwellsDuiker  tcta---aat-tttggtgccaattacc----tgct-a---g--ttt
               HarveysDuiker  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
                       Oribi  tcta---aat-tttggtgctaattaac----tgct-a---g---tt
             ThomsonsGazelle  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
               GrantsGazelle  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                     Gerenuk  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                       Saiga  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                   Springbok  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                CommonDuiker  tcta---aat-tttggtgccaattacc----tgct-a---g---tt
               BohorReedbuck  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
            DefassaWaterbuck  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                      Lechwe  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                     Gemsbok  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
          ScimitarHornedOryx  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
                RoanAntelope  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
               SableAntelope  tcta---aat-tttggtgctaattacc----tgct-a---g---tt
              BlueWildebeest  tcta---aat-tttggtgctaattacc-----act-a---g---tt
                        Topi  tcta---aat-tttggtgctaattacc-----act-a---g---tt
         GreaterHorseshoeBat  ttta---cat-tttggtgctaattacc----tgctta---g-----
     WesternEuropeanHedgehog  tttaattttt-tttggctctaattacc----tgctta---a-----
                  HouseMouse  tctg---agg-tttt-tgctaattaag----tttt-----------
            ChineseTreeShrew  tctg---aat-ttttgtgctaattacc----tgctca---c-----
                      Alpaca  ttta---aat-tttggtgctaattagc----tgct-c---g-----
           WildBactrianCamel  ttta---aat-tttggtgctaattagc----tgct-a---g-----
                ArabianCamel  ttta---aat-tttggtattaattagc----tgct-a---g-----
                  MinkeWhale  ttta---gat-tttggggctacttacc----tgct-a---g-----
                 KillerWhale  ttta---gat-tttggtgctacttacc----tgct-a---g-----
                  SpermWhale  ttta---gat-tttggtgctacttacc----tgct-a---g-----
              ChacoanPeccary  ttta---aat-tctgctgctaactgcc----ttct-a---g-----

Alignment block 35 of 179 in window, 6280643 - 6280648, 6 bps 
B D             ARS_UCD_addY  ttttta
                      Rabbit  --ttag
                       Horse  --ttag
             ChinesePangolin  --ttaa
                       Human  --ttag
                    Aardvark  --ttag
                   BlueWhale  ---tag
     CommonBottlenoseDolphin  ---tag
                 BelugaWhale  ---tag
                         Pig  ---tag
              FloridaManatee  --ttag

Alignment block 36 of 179 in window, 6280649 - 6280654, 6 bps 
B D             ARS_UCD_addY  t-ttttt
                      Rabbit  t-tttgt
                       Horse  c-tttgt
             ChinesePangolin  t-tttgt
                       Human  t-tttgc
                    Aardvark  t-tctgt
                   BlueWhale  t-tttgt
     CommonBottlenoseDolphin  t-tttgt
                 BelugaWhale  t-tttgt
                         Pig  t-ttggt
              FloridaManatee  t-tctat
                       Gayal  t-ttttt
               AmericanBison  t-ttttt
                  LesserKudu  t-ttttt
                 CommonEland  t-ttttt
                     WildYak  t-ttttt
                 DomesticYak  t-ttttt
                 GreaterKudu  t-ttttt
                    Bushbuck  t-ttttt
                       Bongo  t-ttttt
                      Impala  t-ttttt
                        Suni  t-ttttt
                Klipspringer  t-ttttt
                WaterBuffalo  t-ttttt
              AfricanBuffalo  t-ttttt
                   Sitatunga  t-ttttt
                 NilgiriTahr  t-ttttt
B D                     ARS1  t-ttttt
                    WildGoat  t-ttttt
                SiberianIbex  t-ttttt
              AlpineMuskDeer  tattttt
       ChineseForestMuskDeer  tattttt
            SiberianMuskDeer  tattttt
                BlackMuntjac  t-ttccc
                MountainGoat  t-ttttt
                       Sheep  t-ttttt
             EuropeanMouflon  t-ttttt
              AsiaticMouflon  t-ttttt
                   SnowSheep  t-ttttt
                BighornSheep  t-ttttt
                BarbarySheep  t-ttttt
                      Bharal  t-ttttt
               IndianMuntjac  t-tttcc
               ReevesMuntjac  t-tttcc
             WhiteLippedDeer  --tttcc
                 YarkandDeer  c-ctccc
                     RedDeer  c-ctccc
             WhiteTailedDeer  t-ttttt
                    MuleDeer  t-ttttc
                    Reindeer  t-ttttc
              EasternRoeDeer  t-ttttc
              WesternRoeDeer  t-ttttc
                 EurasianElk  t-ttttt
            ChineseWaterDeer  t-ttttt
                       Okapi  t-ttttt
                     Giraffe  t-ttttt
                   Pronghorn  c-cttct
               JavaMouseDeer  t-ttttt
             LesserMouseDeer  t-ttttt
                  ZebuCattle  t-ttttt
                        Gaur  t-ttttt
                    Steenbok  t-ttttt
          PrzewalskisGazelle  t-ttttt
               RoyalAntelope  t-ttttt
                 KirksDikDik  t-ttttt
                      Herola  t-ttttt
              MaxwellsDuiker  t-ttttt
               HarveysDuiker  t-ttttt
                       Oribi  t-ttttt
             ThomsonsGazelle  t-ttttc
               GrantsGazelle  t-ttttt
                     Gerenuk  t-ttttt
                       Saiga  ----ttt
                   Springbok  t-ttttt
                CommonDuiker  t-ttttt
               BohorReedbuck  t-ttttt
            DefassaWaterbuck  t-ttttt
                      Lechwe  t-ttttt
                     Gemsbok  t-ttttt
          ScimitarHornedOryx  t-ttttt
                RoanAntelope  t-ttttt
               SableAntelope  t-ttttt
              BlueWildebeest  t-ttttt
                        Topi  t-ttttt
         GreaterHorseshoeBat  t-tttgt
     WesternEuropeanHedgehog  a-ctcat
                  HouseMouse  t-gttgt
            ChineseTreeShrew  t-tttgt
                      Alpaca  t-tttgt
           WildBactrianCamel  t-tttgt
                ArabianCamel  t-tttgt
                  MinkeWhale  t-tttgt
                 KillerWhale  t-tttgt
                  SpermWhale  t-tttgt
              ChacoanPeccary  t-tttgt

Alignment block 37 of 179 in window, 6280655 - 6280656, 2 bps 
B D             ARS_UCD_addY  tc
                      Rabbit  tt
                       Horse  tc
             ChinesePangolin  tt
                       Human  tc
                    Aardvark  gc
                   BlueWhale  tc
     CommonBottlenoseDolphin  tc
                 BelugaWhale  tc
                         Pig  tc
              FloridaManatee  ac
                       Gayal  tc
               AmericanBison  tc
                  LesserKudu  tc
                 CommonEland  tc
                     WildYak  tc
                 DomesticYak  tc
                 GreaterKudu  tc
                    Bushbuck  tc
                       Bongo  tc
                      Impala  tc
                        Suni  tt
                Klipspringer  tc
                WaterBuffalo  tc
              AfricanBuffalo  tc
                   Sitatunga  tc
                 NilgiriTahr  tc
B D                     ARS1  tc
                    WildGoat  tc
                SiberianIbex  tc
              AlpineMuskDeer  tc
       ChineseForestMuskDeer  tc
            SiberianMuskDeer  tc
                BlackMuntjac  cc
                MountainGoat  tc
                       Sheep  tc
             EuropeanMouflon  tc
              AsiaticMouflon  tc
                   SnowSheep  tc
                BighornSheep  tc
                BarbarySheep  tc
                      Bharal  tc
               IndianMuntjac  cc
               ReevesMuntjac  cc
             WhiteLippedDeer  ac
                 YarkandDeer  -c
                     RedDeer  -c
                     HogDeer  -t
             WhiteTailedDeer  -c
                    MuleDeer  -c
                    Reindeer  -c
                 EurasianElk  -c
                       Okapi  -c
                     Giraffe  -c
                   Pronghorn  tc
               JavaMouseDeer  tc
             LesserMouseDeer  tc
                  ZebuCattle  tc
                        Gaur  tc
                    Steenbok  tc
          PrzewalskisGazelle  tc
               RoyalAntelope  tc
                 KirksDikDik  tc
                      Herola  -c
              MaxwellsDuiker  cc
               HarveysDuiker  tc
                       Oribi  tc
             ThomsonsGazelle  tc
               GrantsGazelle  tc
                     Gerenuk  tc
                       Saiga  tt
                   Springbok  tc
                CommonDuiker  tc
               BohorReedbuck  tc
            DefassaWaterbuck  tc
                      Lechwe  tc
                     Gemsbok  tc
          ScimitarHornedOryx  tc
                RoanAntelope  tc
               SableAntelope  tc
              BlueWildebeest  tc
                        Topi  tc
         GreaterHorseshoeBat  tc
     WesternEuropeanHedgehog  tc
                  HouseMouse  tc
            ChineseTreeShrew  tc
                      Alpaca  tc
           WildBactrianCamel  tc
                ArabianCamel  tc
                  MinkeWhale  tc
                 KillerWhale  tc
                  SpermWhale  tc
              ChacoanPeccary  tc

Alignment block 38 of 179 in window, 6280657 - 6280731, 75 bps 
B D             ARS_UCD_addY  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                      Rabbit  ctt--------------------------t-aaaaggatattcctgagccaaaacctcccggaaatacta
                       Horse  ctt--------------------------t-aaaaggctattccaaagccaaaacataacagatgtacta
             ChinesePangolin  ctt--------------------------t-aaaagtctattccagagctaaaacataacagatgtacta
                       Human  ctt--------------------------t-aaaaggttattccaaagccaaaatgtaacagatgtactg
                    Aardvark  ttt--------------------------t-aaaagactgttccagagccaaagcataacagatgtgctg
                   BlueWhale  ctt--------------------------t-aaaaggctatcccagcacccaaacataacagatgtacta
     CommonBottlenoseDolphin  ctt--------------------------t-aaaaggctatcccagcacccaaacataacagatgtacta
                 BelugaWhale  ctt--------------------------t-aaaaggctatcccagcacccaaacataacagatgtacta
                         Pig  ctt--------------------------taaaaaagctatcccag-gccaaaacataacagatgtacta
              FloridaManatee  ttt--------------------------t-agaaaactatgccagagacaaagcacagtagatgtacta
                       Gayal  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
               AmericanBison  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                  LesserKudu  ctt--------------------------t-aaaaggctatcccagtgtcctaacataacagatgcacta
                 CommonEland  ctt--------------------------t-aaaaggctgtcccagtgtcctaacataacagatgcacta
                     WildYak  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                 DomesticYak  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                 GreaterKudu  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                    Bushbuck  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                       Bongo  ctt--------------------------t-aaaaggctgtcccagcgtcctaatataacagatgcacta
                      Impala  ctt--------------------------t-aaaaggctgtcccagggccctaacataacagatgcactg
                        Suni  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                Klipspringer  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                WaterBuffalo  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
              AfricanBuffalo  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                   Sitatunga  ctt--------------------------t-aaaaggctgtcccagcgtcctaatataacagatgcacta
                 NilgiriTahr  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
B D                     ARS1  ctt--------------------------t-aaaaggccgtcccagtgccctaacataacagatgcacta
                    WildGoat  ctt--------------------------t-aaaaggccgtcccagcgccctgacataacagatgcgcta
                SiberianIbex  ctt--------------------------t-aaaaggccgtcccagcgccctaacataacagatgcacta
              AlpineMuskDeer  ctt--------------------------t-aaaaggctgttccagcgccctaacataacagatgtacta
       ChineseForestMuskDeer  ctt--------------------------t-aaaaggctgttccagcgccctaacataacagatgtacta
            SiberianMuskDeer  ctt--------------------------t-aaaaggctgttccagcgccctaacataacagatgtacta
                BlackMuntjac  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
                MountainGoat  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                       Sheep  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
             EuropeanMouflon  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
              AsiaticMouflon  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                   SnowSheep  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                BighornSheep  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                BarbarySheep  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                      Bharal  ctt--------------------------t-aaaaggctgtcccagtgccctgacataacagatgcacta
               IndianMuntjac  ctt--------------------------t-gaaagcctgtcccagcgccctagcgtagcagatgcactg
               ReevesMuntjac  ctt--------------------------t-gaaagcctgtcccagcgccctagcgtagcagatgcactg
              PereDavidsDeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
             WhiteLippedDeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
                 YarkandDeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
                     RedDeer  ctt--------------------------t-gaaaggctgtcccagctccctagcatagcagatgcactg
                     HogDeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
             WhiteTailedDeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
                    MuleDeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
                    Reindeer  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
              EasternRoeDeer  -----------------------------------------cccagcgccctagcatagcagatgcactg
              WesternRoeDeer  -----------------------------------------cccagcgccctagcatagcagatgcactg
                 EurasianElk  ctt--------------------------t-gaaaggctgtcccagcgccctagcatagcagatgcactg
            ChineseWaterDeer  --------------------------------------tttcccagcgccctagcatagcagatgcactg
                       Okapi  ctt--------------------------t-aaaaggctatcccagcgccctaacataacagatgtacta
                     Giraffe  ctt--------------------------t-aaaaggctatcccagcgccctaacataacagatgtacta
                   Pronghorn  ctt--------------------------t-aaaaggctatcgcagagccctaacataacagatgtacta
               JavaMouseDeer  ctt--------------------------t-aagaggctaacccagtgcccaaacataacagatgtacta
             LesserMouseDeer  ctt--------------------------t-aagaggctaacccagtgcccaaacataacagatgtacta
                  ZebuCattle  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                        Gaur  ctt--------------------------t-aaaaggctgtcccagcgtcctaacataacagatgcacta
                    Steenbok  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
          PrzewalskisGazelle  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
               RoyalAntelope  ctt--------------------------t-aaaaggctgtcccagcgccctaacacaacagatgcacta
                 KirksDikDik  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
                      Herola  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
              MaxwellsDuiker  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
               HarveysDuiker  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                       Oribi  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
             ThomsonsGazelle  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
               GrantsGazelle  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
                     Gerenuk  ctt--------------------------t-aaaaggctgtcccagtgccctaacataacagatgcacta
                       Saiga  ttt--------------------------t-aaaaggctgtccccgtgccctaacataacagatgtactg
                   Springbok  ctt--------------------------t-aaaagcctgtcccagtgccc-aacataacagatgcacta
                CommonDuiker  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
               BohorReedbuck  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
            DefassaWaterbuck  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                      Lechwe  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
                     Gemsbok  ctg--------------------------t-aaaaggcagtcccagcgccctaacataacagatgcactc
          ScimitarHornedOryx  ctg--------------------------t-aaaaggcagtcccagcgccctaacataacagatgcactc
                RoanAntelope  ctg--------------------------t-aaaaggcagtcccagcgccctaacataacagatgcactc
               SableAntelope  ctg--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcactc
              BlueWildebeest  ctt--------------------------t-aaaaggctgtcccagcaccctaacataacagatgcacta
                        Topi  ctt--------------------------t-aaaaggctgtcccagcgccctaacataacagatgcacta
         GreaterHorseshoeBat  ctt--------------------------t-aaaaggctattccagcgtcaaaatgtaacagatgtacta
     WesternEuropeanHedgehog  cttagagagagagagaaagaaagaaagaaa-gaaaggcaatcccagagtcaaacag-aacagatgtgcta
                  HouseMouse  ctt--------------------------g-gaatagctcttccagagcccaagtgtcacagatgtatta
            ChineseTreeShrew  ctg--------------------------t-aaattgtgaatccagagccaaaacctaacagatgtacta
                      Alpaca  ctt--------------------------t-aaaaggctatcccagcgccaaagcacagcagatgtacta
           WildBactrianCamel  ctt--------------------------t-aaaaggctatcccagcgccaaagcacaacagatgtacta
                ArabianCamel  ctt--------------------------t-caaaggctatcccagcgccaaagcacaacagatgtacta
                  MinkeWhale  ctt--------------------------t-aaaaggctatcccagcacccaaacataacagatgtacta
                 KillerWhale  ctt--------------------------t-aaaaggctatcccagcacccaaacataacagatgtacta
                  SpermWhale  ctt--------------------------t-aaaaggctatcccagcacccaaacataacagatgtacta
              ChacoanPeccary  ctt--------------------------taaaaaagctatcccagtgccaaaacataacagatgtacta

                ARS_UCD_addY  tattttctgctaattcccgaggctcagttagt
                      Rabbit  tattttctactgtttcctaaggctcagtaagt
                       Horse  tattttctcttaattcccgaggctcagttagt
             ChinesePangolin  tattttc---taattcccaaggctcagttatt
                       Human  tgttttctactaattcctgaggctcagtaagt
                    Aardvark  tattttccactaattcccaagacccagtaagt
                   BlueWhale  tattttctactaattcctgaggctc----agt
     CommonBottlenoseDolphin  tattttctactaattcctgaggctc----agt
                 BelugaWhale  tattttctactaattcctgaggctc----agt
                         Pig  tattttctactaattcccgaggctcagttagt
              FloridaManatee  tattttctactaattcccgaggctcagtaagt
                       Gayal  tattttctgctaattcccgaggctcagttagt
               AmericanBison  tattttctgctaattcccgaggctcagttagt
                  LesserKudu  tattttctactaattcccgaggctcagttagt
                 CommonEland  tattttctactaattcccgaggctcagttagt
                     WildYak  tattttctgctaattcccgaggctcagttagt
                 DomesticYak  tattttctgctaattcccgaggctcagttagt
                 GreaterKudu  tattttctcctaattcccgaggctcagttagt
                    Bushbuck  tattttctactaattcccgaggctcagttagt
                       Bongo  tattttctactaattcccgaggctcagttagt
                      Impala  tattttct-ctaattcccgaggctcagttggt
                        Suni  tattttctactaattcccgaggctcagttggt
                Klipspringer  gattttctactaattcccgaggctcagttagt
                WaterBuffalo  tattttctgctaattcccgaggctcagttagt
              AfricanBuffalo  tattttctgctaattcccgaggctcagttagt
                   Sitatunga  tattttctactaattcccgaggctcagttagt
                 NilgiriTahr  tattttctactaattcccgaggctcagttagt
                        ARS1  tgttttctactaattcccgaggctcagttagt
                    WildGoat  tgttttctactaattcccgaggctcagttagt
                SiberianIbex  tgttctctactaattcccgaggct--gttagt
              AlpineMuskDeer  tattttctactaattcccaaggctcagttggt
       ChineseForestMuskDeer  tattttctactaattcccaaggctcagttggt
            SiberianMuskDeer  tattttctactaattcccaaggctcagttggt
                BlackMuntjac  tattttctactaattcccga-gctcagct-ct
                MountainGoat  tattttctactaattcccgaggctcagttagt
                       Sheep  tattttctactaattcccgaggctcagttagt
             EuropeanMouflon  tattttctactaattcccgaggctcagttagt
              AsiaticMouflon  tattttctactaattcccgaggctcagttagt
                   SnowSheep  tattttctactaattcccgaggctcagttagt
                BighornSheep  tattttctactaattcccgaggctcagttagt
                BarbarySheep  tattttctactaattcccgaggctcagttagt
                      Bharal  tattttctactaattcccgaggctcagttagt
               IndianMuntjac  tattttctactaattcccga-gctcagctc-t
               ReevesMuntjac  tattttctactaattcccga-gctcagctc-t
              PereDavidsDeer  tattttctactaattcccga-gctcagcccgt
             WhiteLippedDeer  tattttctactaattcccga-gctcagcccgt
                 YarkandDeer  tattttctactaattcccga-gctcagcccgt
                     RedDeer  tattttctactaattcccga-gctcagcccgt
                     HogDeer  tattttctactaattcccga-gctcagcccgt
             WhiteTailedDeer  tattttctactaattcccga-gctcagctc-t
                    MuleDeer  tatttgctactaattcccga-gctcagctc-t
                    Reindeer  tattttctactaattcccga-gctcagctc-t
              EasternRoeDeer  tattttctactaattcccga-gctcagctc-t
              WesternRoeDeer  tattttctactaattctcga-gctcagctc-t
                 EurasianElk  tattttctactaattcccga-gctcagctc-t
            ChineseWaterDeer  tattttctactaattcccga-gctcagctc-t
                       Okapi  tgttttctattaatttcggaggctcagctagt
                     Giraffe  tgttttctactaattcccgaggctcagctagt
                   Pronghorn  tattttctactaattcccgaggctcagttagt
               JavaMouseDeer  tattttctactaattcccgaggctcagttagt
             LesserMouseDeer  tattttctactaattcccgaggctcagttagt
                  ZebuCattle  tattttctgctaattcccgaggctcagttagt
                        Gaur  tattttctgctaattcccgaggctcagttagt
                    Steenbok  tattttctactaattcccgaggctcagttagc
          PrzewalskisGazelle  tattttctactaattcccgaggctcagttagt
               RoyalAntelope  tattttctactaattcccgaggctcagttagt
                 KirksDikDik  tattttctactaattcccgaggctcagttagt
                      Herola  tattttctactaattcccgaggctcagttagt
              MaxwellsDuiker  tattttctactaattccccaggctcagttagt
               HarveysDuiker  tattttctactaattcccgaggctcagttagt
                       Oribi  tattttctactaattcccgaggctcagttagt
             ThomsonsGazelle  tattttctactaattcccgaggctcagttagt
               GrantsGazelle  tattttctactaattcccgaggctcagttagt
                     Gerenuk  tattttctactaattcccgaggctcagttagt
                       Saiga  tattttctactaattcccgaggctcagtttgt
                   Springbok  tattttctactaattcccgaggctcagttagt
                CommonDuiker  tattttctactaattcccgaggctcagttagt
               BohorReedbuck  tattttctactaattcccgaggctcagttagt
            DefassaWaterbuck  tattttctactaattcccgaggctcagttagt
                      Lechwe  tattttctactaattcccgaggctcagttagt
                     Gemsbok  tattttctactaattcccgaggctcagttagt
          ScimitarHornedOryx  tattttctactaattcccgaggctcagttagt
                RoanAntelope  tattttctactaattcccgagggccagttagt
               SableAntelope  tattttctactaattcccgagggccagttagt
              BlueWildebeest  tattttctactaattcccgaggctcagttagt
                        Topi  tattttctactaattcccgaggctcagttagt
         GreaterHorseshoeBat  tattttctactaattcccgaggctcagttaac
     WesternEuropeanHedgehog  tattttcttacaattcacgggtctcagctagt
                  HouseMouse  tattgtttgcc-atttctgaggttggttaaat
            ChineseTreeShrew  tattttctactaatttccaaggctcggtaggt
                      Alpaca  tattttctactaattcccg----tt----agt
           WildBactrianCamel  tattttctactaattcccg----tt----agt
                ArabianCamel  tattttctactaattcccg----tt----agt
                  MinkeWhale  tattttctactaattcctgaggctc----agt
                 KillerWhale  tattttctactaattcctgaggctc----agt
                  SpermWhale  tattttctactaattcctgaggctc----agt
              ChacoanPeccary  tattttctactaattcccgaggctcagttagt

Alignment block 39 of 179 in window, 6280732 - 6280735, 4 bps 
B D             ARS_UCD_addY  tgct
                      Rabbit  tgct
                       Horse  tcct
             ChinesePangolin  tgct
                       Human  tgct
                    Aardvark  tact
                   BlueWhale  tgct
     CommonBottlenoseDolphin  tgct
                 BelugaWhale  tgct
                         Pig  tgct
              FloridaManatee  tact
                     Tuatara  tgca
                       Gayal  tgct
               AmericanBison  tgct
                  LesserKudu  tgcc
                 CommonEland  tgcc
                     WildYak  tgct
                 DomesticYak  tgct
                 GreaterKudu  tgcc
                    Bushbuck  tgcc
                       Bongo  tgcc
                      Impala  tgct
                        Suni  tgct
                Klipspringer  tgct
                WaterBuffalo  tgct
              AfricanBuffalo  tgct
                   Sitatunga  tgcc
                 NilgiriTahr  tgct
B D                     ARS1  tgct
                    WildGoat  tgct
                SiberianIbex  tgct
              AlpineMuskDeer  tgct
       ChineseForestMuskDeer  tgct
            SiberianMuskDeer  tgct
                BlackMuntjac  tgct
                MountainGoat  tgct
                       Sheep  tgct
             EuropeanMouflon  tgct
              AsiaticMouflon  tgct
                   SnowSheep  tgct
                BighornSheep  tgct
                BarbarySheep  tgct
                      Bharal  tgct
               IndianMuntjac  tgct
               ReevesMuntjac  tgct
              PereDavidsDeer  tgct
             WhiteLippedDeer  tgct
                 YarkandDeer  tgct
                     RedDeer  tgct
                     HogDeer  tgct
             WhiteTailedDeer  tgct
                    MuleDeer  tgct
                    Reindeer  tgct
              EasternRoeDeer  tgct
              WesternRoeDeer  tgct
                 EurasianElk  tgct
            ChineseWaterDeer  tgct
                       Okapi  tgct
                     Giraffe  tgct
                   Pronghorn  tgct
               JavaMouseDeer  tgct
             LesserMouseDeer  tgct
                  ZebuCattle  tgct
                        Gaur  tgct
                    Steenbok  tgct
          PrzewalskisGazelle  tgct
               RoyalAntelope  tgct
                 KirksDikDik  tgct
                      Herola  tgct
              MaxwellsDuiker  tgct
               HarveysDuiker  tgct
                       Oribi  tgct
             ThomsonsGazelle  tgct
               GrantsGazelle  tgct
                     Gerenuk  tgct
                       Saiga  tgct
                   Springbok  tgct
                CommonDuiker  tgct
               BohorReedbuck  tgct
            DefassaWaterbuck  tgct
                      Lechwe  tgct
                     Gemsbok  tgct
          ScimitarHornedOryx  tgct
                RoanAntelope  tgct
               SableAntelope  tgct
              BlueWildebeest  tgct
                        Topi  tgct
         GreaterHorseshoeBat  tgct
     WesternEuropeanHedgehog  tgcc
                  HouseMouse  cgct
            ChineseTreeShrew  ttct
                      Alpaca  tgct
           WildBactrianCamel  tgct
                ArabianCamel  tgct
                  MinkeWhale  tgct
                 KillerWhale  tgct
                  SpermWhale  tgct
              ChacoanPeccary  tgct

Alignment block 40 of 179 in window, 6280736 - 6280749, 14 bps 
B D             ARS_UCD_addY  cactgtgtcttgtc
                      Rabbit  cagtgcgtcttgtc
              GreenSeaTurtle  cactgtgttcagcc
                       Horse  cagtgtgtcttgtc
             ChinesePangolin  cagcatgtcttgtc
                       Human  cagtgtgtcttgtc
                    Aardvark  cagtgtgccttgtc
                   BlueWhale  ca--gtgtcttgtc
     CommonBottlenoseDolphin  ca--gtgtcttgtc
                 BelugaWhale  ca--gtgtcttgtc
                         Pig  cagtgtgtctcgtc
              FloridaManatee  cagtgtgtcttgtc
                     Tuatara  cagtatgaccagtc
                       Gayal  cactgtgtcttgtc
               AmericanBison  cactgtgtcttgtc
                  LesserKudu  cactgtgtcttgtc
                 CommonEland  cactgtgtcttgtc
                     WildYak  cactgtgtcttgtc
                 DomesticYak  cactgtgtcttgtc
                 GreaterKudu  cactgtgtcttgtc
                    Bushbuck  cactgtgtcttgtc
                       Bongo  cactgtgtcttgtc
                      Impala  cactgtgtcttgtc
                        Suni  cactgtgtcttgtc
                Klipspringer  cactgtgtcttgtc
                WaterBuffalo  cactgtgtcttgtc
              AfricanBuffalo  cactgtgtcttgtc
                   Sitatunga  cactgtgtcttgtc
               MountainNyala  cactgtgtcttgtc
                 NilgiriTahr  cactgtgtcttgtc
B D                     ARS1  cactgtgtcttgtc
                    WildGoat  cactgtgtcttgtc
                SiberianIbex  cactgtgtcttgtc
              AlpineMuskDeer  cagtgtgtcttgtc
       ChineseForestMuskDeer  cagtgtgtcttgtc
            SiberianMuskDeer  cagtgtgtcttgtc
                BlackMuntjac  cagtgtgtcttgcc
                MountainGoat  cactgtgtcttgtc
                       Sheep  cactgtgtcttgtc
             EuropeanMouflon  cactgtgtcttgtc
              AsiaticMouflon  cactgtgtcttgtc
                   SnowSheep  cactgtgtcttgtc
                BighornSheep  cactgtgtcttgtc
                BarbarySheep  cactgtgtcttgtc
                      Bharal  cactgtgtcttgtc
               IndianMuntjac  cagtgtgtcttgcc
               ReevesMuntjac  cagtgtgtcttgcc
              PereDavidsDeer  cagcgtgtcttgcc
             WhiteLippedDeer  cagcgtgtcttgcc
                 YarkandDeer  cagcgtgtcttgcc
                     RedDeer  cagcgtgtcttgcc
                     HogDeer  cagcgtgtcttgcc
             WhiteTailedDeer  cagcgtgtcttgcc
                    MuleDeer  cagcgtgtcttgcc
                    Reindeer  cagcgtgtcttgcc
              EasternRoeDeer  cagcgtgtcttgcc
              WesternRoeDeer  cagcgtgtcttgcc
                 EurasianElk  cagcgtgtcttgcc
            ChineseWaterDeer  cagcgtgtcttgcc
                       Okapi  cagtgagtcttgtc
                     Giraffe  cagtgagtcttgtc
                   Pronghorn  cagtgtgtcttgtc
               JavaMouseDeer  tagtgtgtcttgtc
             LesserMouseDeer  tagtgtgtcttgtc
                  ZebuCattle  cactgtgtcttgtc
                        Gaur  cactgtgtcttgtc
                    Steenbok  cactgtgtcttgtc
          PrzewalskisGazelle  cactgtgtcttgtc
               RoyalAntelope  cactgtgtcttgtc
                 KirksDikDik  cactgtgtcttgtc
                      Herola  cactgtgtcttgtc
              MaxwellsDuiker  cactgtgtcttgtc
               HarveysDuiker  cactgtgtcttgtc
                       Oribi  cactgtgtcttgtc
             ThomsonsGazelle  cactgtgtcttgtc
               GrantsGazelle  cactgtgtcttgtc
                     Gerenuk  cactgtgtcttgtc
                       Saiga  cactgtgtcttgtc
                   Springbok  cactgtgtcttgtc
                CommonDuiker  cactgtgtctcgtc
               BohorReedbuck  cactgtgtcttgtc
            DefassaWaterbuck  cactgtgtcttgtc
                      Lechwe  cactgtgtcttgtc
                     Gemsbok  cactgtgtcttgtc
          ScimitarHornedOryx  cactgtgtcttgtc
                RoanAntelope  cactgtgtcttgtc
               SableAntelope  cactgtgtcttgtc
              BlueWildebeest  cactgtgtcttgtc
                        Topi  cactgtgtcttgtc
         GreaterHorseshoeBat  cagtgtgtcttgtc
     WesternEuropeanHedgehog  ctggctgtcttgtc
                  HouseMouse  ccctgtgtcttgtc
            ChineseTreeShrew  tagtatg-cttgtc
                      Alpaca  ca--gtgtcttgtc
           WildBactrianCamel  ca--gtgtcttgtc
                ArabianCamel  ca--gtgtcttgtc
                  MinkeWhale  ca--gtgtcttgtc
                 KillerWhale  ca--gtgtcttgtc
                  SpermWhale  ca--gtgtcttgtc
              ChacoanPeccary  cagtgtgtctcgtc

Alignment block 41 of 179 in window, 6280750 - 6280784, 35 bps 
B D             ARS_UCD_addY  cccaggtaattcaggcctgggggaagggttccttc
                      Rabbit  cccaggtaattcaggcctgggggaagggttccttc
              GreenSeaTurtle  tgcaggtaatttttggctagaggaagtgtttccg-
                       Horse  cccaggtaattcaggcctgggggaagggttccttc
             ChinesePangolin  cccaggtaattcagcactgggggaagggttccttc
                       Human  cccaggtaattcaggcctgggggaagggttccttc
                    Aardvark  cccaggtaattcaggcctgggggaagggttccttc
                   BlueWhale  cccaggtaattcaggcctgggggaagggttccttc
     CommonBottlenoseDolphin  cccaggtaattcaggcctgggggaagggttccttc
                 BelugaWhale  cccaggtaattcaggcctgggggaagggttccttc
                         Pig  cccaggtaattcaggcctgggggaagggttccttc
              FloridaManatee  cccaggtaattcaggcctgggggaagggttccttc
                     Tuatara  gccaggtgattttgg-ctgggggaagggatccttc
                       Gayal  cccaggtaattcaggcctgggggaagggttccttc
               AmericanBison  cccaggtaattcaggcctgggggaagggttccttc
                  LesserKudu  cccaggtaattcaggcctgggggaagggttccttc
                 CommonEland  cccaggtaattcaggcctgggggaagggttccttc
                     WildYak  cccaggtaattcaggcctgggggaagggttccttc
                 DomesticYak  cccaggtaattcaggcctgggggaagggttccttc
                 GreaterKudu  cccaggtaattcaggcctgggggaagggttccttc
                    Bushbuck  cccaggtaattcaggcctgggggaagggttccttc
                       Bongo  cccaggtaattcaggcctgggggaagggttccttc
                      Impala  cccaggtaattcaggcctgggggaagggttccttc
                        Suni  cccaggtaattcaggcctgggggaagggttccttc
                Klipspringer  cccaggtaattcaggcctgggggaagggttccttc
                WaterBuffalo  cccaggtaattcaggcctgggggaagggttccttc
              AfricanBuffalo  cccaggtaattcaggcctgggggaagggttccttc
                   Sitatunga  cccaggtaattcaggcctgggggaagggttccttc
               MountainNyala  cccaggtaattcaggcctgggggaagggttccttc
                 NilgiriTahr  cccaggtaattcaggcctgggggaagggttccttc
B D                     ARS1  cccaggtaattcaggcctgggggaagggttccttc
                    WildGoat  cccaggtaattcaggcctgggggaagggttccttc
                SiberianIbex  cccaggtaattcaggcctgggggaagggttccttc
              AlpineMuskDeer  cccaggtaattcaggcctgggggaagggttccttc
       ChineseForestMuskDeer  cccaggtaattcaggcctgggggaagggttccttc
            SiberianMuskDeer  cccaggtaattcaggcctgggggaagggttccttc
                BlackMuntjac  cccaggtaattcaggcctgggggaggggttccttt
                MountainGoat  cccaggtaattcaggcctgggggaagggttccttc
                       Sheep  cccaggtaattcaggcctgggggaagggttccttc
             EuropeanMouflon  cccaggtaattcaggcctgggggaagggttccttc
              AsiaticMouflon  cccaggtaattcaggcctgggggaagggttccttc
                   SnowSheep  cccaggtaattcaggcctgggggaagggttccttc
                BighornSheep  cccaggtaattcaggcctgggggaagggttccttc
                BarbarySheep  cccaggtaattcaggcctgggggaagggttccttc
                      Bharal  cccaggtaattcaggcctgggggaagggttccttc
               IndianMuntjac  cccaggtaattcaggcctgggggaggggttccttt
               ReevesMuntjac  cccaggtaattcaggcctgggggaggggttccttt
              PereDavidsDeer  cccaggtaattcaggcctgggggaggggttccttt
             WhiteLippedDeer  cccaggtaattcaggcctgggggaggggttccttt
                 YarkandDeer  cccaggtaattcaggcctgggggaggggttccttt
                     RedDeer  cccaggtaattcaggcctgggggaggggttccttt
                     HogDeer  cccaggtaattcaggcctgggggaggggttccttt
             WhiteTailedDeer  cccaggtaattcaggcctgggggaggggttccttt
                    MuleDeer  cccaggtaattcaggcctgggggaggggttccttt
                    Reindeer  cccaggtaattcaggcctgggggaggggttccttt
              EasternRoeDeer  cccaggtaattcaggcctgggggaggggttccttt
              WesternRoeDeer  cccaggtaattcaggcctgggggaggggttccttt
                 EurasianElk  cccaggtaattcaggcctgggggaggggttccttt
            ChineseWaterDeer  cccaggtaattcaggcctgggggaggggttccttt
                       Okapi  cccaggtaattcaggcctgggggaagggttccttc
                     Giraffe  cccaggtaattcaggcctgggggaagggttccttc
                   Pronghorn  cccaggtaattcaggcctgggggaagggttccctc
               JavaMouseDeer  cccaggtaattcaggcctgggggaagggttccttc
             LesserMouseDeer  cccaggtaattcaggcctgggggaagggttccttc
                  ZebuCattle  cccaggtaattcaggcctgggggaagggttccttc
                        Gaur  cccaggtaattcaggcctgggggaagggttccttc
                    Steenbok  cccaggtaattcaggcctgggggaagggttccttc
          PrzewalskisGazelle  cccaggtaattcaggcctgggggaagggttccttc
               RoyalAntelope  cccaggtaattcaggcctgggggaagggttccttc
                 KirksDikDik  cccaggtaattcaggcctgggggaagggttccttc
                      Herola  cccaggtaattcaggcctgggggaagggttccttc
              MaxwellsDuiker  cccaggtaattcaggcctgggggaagggttccttc
               HarveysDuiker  cccaggtaattcaggcctgggggaagggttccttc
                       Oribi  cccaggtaattcaggcctgggggaagggttccttc
             ThomsonsGazelle  cccaggtaattcaggcctgggggaagggttccttc
               GrantsGazelle  cccaggtaattcaggcctgggggaagggttccttc
                     Gerenuk  cccaggtaattcaggcctgggggaagggttccttc
                       Saiga  cccaggtaattcaggcctgggggaagggttccttc
                   Springbok  cccaggtaattcaggcctgggggaagggttccttc
                CommonDuiker  cccaggtaattcaggcctgggggaagggttccttc
               BohorReedbuck  cccaggtaattcaggcctgggggaagggttccttc
            DefassaWaterbuck  cccaggtaattcaggcctgggggaagggttccttc
                      Lechwe  cccaggtaattcaggcctgggggaagggttccttc
                     Gemsbok  cccaggtaattcaggcctgggggaagggttccttc
          ScimitarHornedOryx  cccaggtaattcaggcctgggggaagggttccttc
                RoanAntelope  cccaggtaattcaggcctgggggaagggttccttc
               SableAntelope  cccaggtaattcaggcctgggggaagggttccttc
              BlueWildebeest  cccaggtaattcaggcctgggggaagggttccttc
                        Topi  cccaggtaattcaggcctgggggaagggttccttc
         GreaterHorseshoeBat  cccaggtaattcaggcctgggggaagggttccttc
     WesternEuropeanHedgehog  tccaggtaattcaggcctgggggaagggtttctt-
                  HouseMouse  tccaggtaattgaggcctgggggaagggttccttc
            ChineseTreeShrew  cccaggtaattcaggactgggggaagggttccttc
                      Alpaca  cccaggtaattcaggcctgggggaagggttccttc
           WildBactrianCamel  cccaggtaattcaggcctgggggaagggttccttc
                ArabianCamel  cccaggtaattcaggcctgggggaagggttccttc
                         Dog  cccaggtaacccaggcctgggggaagggttccttc
                  MinkeWhale  cccaggtaattcaggcctgggggaagggttccttc
                 KillerWhale  cccaggtaattcaggcctgggggaagggttccttc
                  SpermWhale  cccaggtaattcaggcctgggggaagggttccttc
              ChacoanPeccary  cccaggtaattcaggcctgggggaagggttccttc

Alignment block 42 of 179 in window, 6280785 - 6280924, 140 bps 
B D             ARS_UCD_addY  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                      Rabbit  ttccagactgatcggtacagctgctccgtcagcgtaactactcagattcccaaagaattctaagtggatg
              GreenSeaTurtle  tcccagactgactggtacagctgctcagttagtataagtattcagattcccagagaattctaaggaaatg
                       Horse  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
             ChinesePangolin  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                       Human  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggttg
                    Aardvark  tgccagactgactggtacagctgctcagtaagtggaactgctcagattcccaaagaattctaagtggatg
                   BlueWhale  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
     CommonBottlenoseDolphin  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 BelugaWhale  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccagagaattctaagtggatg
                         Pig  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              FloridaManatee  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                     Tuatara  -catagactgactggtgcagctggtcagctagtataactacacagattcccagagatttctaaagggatg
                       Gayal  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               AmericanBison  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                  LesserKudu  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 CommonEland  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                     WildYak  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 DomesticYak  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 GreaterKudu  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                    Bushbuck  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                       Bongo  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                      Impala  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                        Suni  ctccagactgattggtgcagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                Klipspringer  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                WaterBuffalo  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              AfricanBuffalo  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                   Sitatunga  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               MountainNyala  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 NilgiriTahr  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
B D                     ARS1  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                    WildGoat  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                SiberianIbex  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              AlpineMuskDeer  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
       ChineseForestMuskDeer  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
            SiberianMuskDeer  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                BlackMuntjac  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                MountainGoat  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                       Sheep  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
             EuropeanMouflon  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              AsiaticMouflon  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                   SnowSheep  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                BighornSheep  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                BarbarySheep  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                      Bharal  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               IndianMuntjac  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
               ReevesMuntjac  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
              PereDavidsDeer  ctccagactgattggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
             WhiteLippedDeer  ctccagactgattggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                 YarkandDeer  ctccagactgattggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                     RedDeer  ctccagactgattggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                     HogDeer  ctccagactgattggtacagctgct-cgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
             WhiteTailedDeer  ctccagactgatcggtacagctgctccgtaagtggaact-ctcagattcccaaagaattctaagtggatg
                    MuleDeer  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                    Reindeer  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaggaattctaagtggatg
              EasternRoeDeer  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
              WesternRoeDeer  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                 EurasianElk  ctccagactgattggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
            ChineseWaterDeer  ctccagactgatcggtacagctgctccgtaagtgtaact-ctcagattcccaaagaattctaagtggatg
                       Okapi  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                     Giraffe  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                   Pronghorn  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               JavaMouseDeer  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
             LesserMouseDeer  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                  ZebuCattle  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                        Gaur  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                    Steenbok  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
          PrzewalskisGazelle  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               RoyalAntelope  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 KirksDikDik  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                      Herola  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              MaxwellsDuiker  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               HarveysDuiker  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                       Oribi  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
             ThomsonsGazelle  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                     Gerenuk  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                       Saiga  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                   Springbok  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                CommonDuiker  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               BohorReedbuck  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
            DefassaWaterbuck  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                      Lechwe  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                     Gemsbok  cttcagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
          ScimitarHornedOryx  cttcagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                RoanAntelope  cttcagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
               SableAntelope  cttcagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              BlueWildebeest  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                        Topi  ctccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
         GreaterHorseshoeBat  taccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
     WesternEuropeanHedgehog  --ccagactgactggtgcagctgctcggtgagtgtaactgctcagatt-ccaaaggattctaagtggatg
                  HouseMouse  ctccagactgactggtacagctgctcagtgagtgtaactgctcagattcccaaagaattctaagtggacg
            ChineseTreeShrew  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                      Alpaca  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
           WildBactrianCamel  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                ArabianCamel  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                         Dog  ctccagactgatcggtacagctgctccgagagcctgacgactcagattcccagagaattctaagcagacg
                  MinkeWhale  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                 KillerWhale  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
                  SpermWhale  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg
              ChacoanPeccary  ttccagactgattggtacagctgctcagtaagtgtaactactcagattcccaaagaattctaagtggatg

                ARS_UCD_addY  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                      Rabbit  ttcctccacagtgtctcttgttctctcta--atcatcatca-ttttcaaatttcatc----------cac
              GreenSeaTurtle  ttcccctacagcctttttctatctcaata--ttccccatca-ttttttaatttcagc----------atg
                       Horse  ttcctccacggtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
             ChinesePangolin  ttcttccaccgtgtctcctgttctttctatcatcatcatca-tttaaaaattttatc----------tac
                       Human  ttcctccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatt----------cag
                    Aardvark  ttcctccaccgtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                   BlueWhale  ttcctccacagtgtctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
     CommonBottlenoseDolphin  ttcctccacagtttctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
                 BelugaWhale  ttcctccacagtttctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
                         Pig  ttcctccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              FloridaManatee  tccctccacggtgtcacttgttctctcta--atcgtcatca-ttttaaaatttcatc----------cac
                     Tuatara  ttactccacaatttctttccttatctgta--tgccccatca-tcttaaaatttcagt------------c
                       Gayal  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               AmericanBison  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                  LesserKudu  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                 CommonEland  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                     WildYak  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                 DomesticYak  ttcttccacagtgtctcttgttctctcta--atcatcatca-ctttaaaatttcatc----------cac
                 GreaterKudu  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                    Bushbuck  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                       Bongo  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                      Impala  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                        Suni  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                Klipspringer  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                WaterBuffalo  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              AfricanBuffalo  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                   Sitatunga  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               MountainNyala  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                 NilgiriTahr  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                        ARS1  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                    WildGoat  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                SiberianIbex  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              AlpineMuskDeer  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
       ChineseForestMuskDeer  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
            SiberianMuskDeer  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                BlackMuntjac  ttcttccgcagtgtctcttgttctctcta--atcatcatca-tttt-aaatttcatc----------cac
                MountainGoat  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                       Sheep  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
             EuropeanMouflon  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              AsiaticMouflon  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                   SnowSheep  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                BighornSheep  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                BarbarySheep  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                      Bharal  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               IndianMuntjac  ttcttccgcagtgtctcttgttctctcta--atcatcatca-tttt-aaatttcatc----------cac
               ReevesMuntjac  ttcttccgcagtgtctcttgttctctcta--atcatcatca-tttt-aaatttcatc----------cac
              PereDavidsDeer  ttcttccgcagtgtctcttgttctctcta--atcatcatcatttttaaaatttcatc----------tgc
             WhiteLippedDeer  ttcttccgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                 YarkandDeer  ttcttccgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                     RedDeer  ttcttccgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                     HogDeer  ttcttccgcagtgtctcttgttctctcta--atcatcatcg-ttttaaaatttcatc----------cac
             WhiteTailedDeer  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                    MuleDeer  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                    Reindeer  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              EasternRoeDeer  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              WesternRoeDeer  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                 EurasianElk  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
            ChineseWaterDeer  ttcttctgcagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                       Okapi  ttcctccacagtgtctcttgttctctgta--atcatcatca-ttttaaaatttcacc----------cac
                     Giraffe  ttcctccacagtgtctcttgttctctgta--atcatcatca-ttttaaaatttcacc----------cac
                   Pronghorn  ttcctc--cagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               JavaMouseDeer  ttcctccacagtgtctcttgttctctcta--atcatcatca-tttcaaaatctcatc----------cac
             LesserMouseDeer  ttcctccacagtgtctcttgttctctcta--atcatcatca-tttcaaaatctcatc----------cac
                  ZebuCattle  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                        Gaur  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                    Steenbok  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
          PrzewalskisGazelle  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               RoyalAntelope  ttcttccacagtgtctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
                 KirksDikDik  ttcttctacagtgtctcttgttctctgta--atcatcatca-ttttaaaatttcatc----------cac
                      Herola  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              MaxwellsDuiker  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               HarveysDuiker  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                       Oribi  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
             ThomsonsGazelle  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                     Gerenuk  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                       Saiga  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                   Springbok  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                CommonDuiker  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               BohorReedbuck  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
            DefassaWaterbuck  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                      Lechwe  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                     Gemsbok  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
          ScimitarHornedOryx  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                RoanAntelope  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
               SableAntelope  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
              BlueWildebeest  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                        Topi  ttcttccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
         GreaterHorseshoeBat  ttcctccacggtgtctcttgttctctcta--atcatcatca-ttttaaaatctcatc----------cac
     WesternEuropeanHedgehog  ttcctccacggtgtctctggctctctcta--atcatcatca-tttagaaatttcatt----------cac
                  HouseMouse  ttccggcacgctgtctcttag--tctcta--atcatcatca-cttgaaaatttcatg----------tgc
            ChineseTreeShrew  ttcctccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
                      Alpaca  ttcctccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac
           WildBactrianCamel  ttcctccacggtgtctcttgttctctcta--atcatcatca-ttttaaaatttcgtc----------cac
                ArabianCamel  ttcctccacggtgtctcttgttctctcta--atcatcatca-ttttaaaatttcgtc----------cac
                         Dog  gtcctccaccgagtc-ctggttctctcta--atcaccatca-ttttaagattccaccccccccccaaccc
                  MinkeWhale  ttcctccacagtgtctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
                 KillerWhale  ttcctccacagtttctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
                  SpermWhale  ttcctccacagtttctcttgttctctcta--atcatcatca-tcttaaaatttcatc----------cac
              ChacoanPeccary  ttcctccacagtgtctcttgttctctcta--atcatcatca-ttttaaaatttcatc----------cac

                ARS_UCD_addY  ttttcattcctta
                      Rabbit  tgctcattccttc
              GreenSeaTurtle  tgctcacccctta
                       Horse  agttcattccttc
             ChinesePangolin  cgttcattccatc
                       Human  cgttcattacttc
                    Aardvark  tgttcattctttc
                   BlueWhale  ttttcattccgta
     CommonBottlenoseDolphin  ttttcattcctta
                 BelugaWhale  ttttcattcctta
                         Pig  tcttcattccttt
              FloridaManatee  tgttcattctttc
                     Tuatara  tgttctctcctct
                       Gayal  ttttcattcctta
               AmericanBison  ttttcattcctta
                  LesserKudu  ttttcattcctta
                 CommonEland  ttttcattcctta
                     WildYak  ttttcattcctta
                 DomesticYak  ttttcattcctta
                 GreaterKudu  ttttcattcctta
                    Bushbuck  ttttcattcctta
                       Bongo  ttttcattcctta
                      Impala  ttttcattcctta
                        Suni  ttttcattcctta
                Klipspringer  ttttcattcctta
                WaterBuffalo  ttttcattcctta
              AfricanBuffalo  ttttcattcctta
                   Sitatunga  ttttcattcctta
               MountainNyala  ttttcattcctta
                 NilgiriTahr  ttttcattcctta
                        ARS1  ttttcgttcctta
                    WildGoat  ttttcgttcctta
                SiberianIbex  ttttcgttcctta
              AlpineMuskDeer  ttttcattcctta
       ChineseForestMuskDeer  ttttcattcctta
            SiberianMuskDeer  ttttcattcctta
                BlackMuntjac  ttttcattcctta
                MountainGoat  ttttcattcctta
                       Sheep  ttttcattcctta
             EuropeanMouflon  ttttcattcctta
              AsiaticMouflon  ttttcattcctta
                   SnowSheep  ttttcattcctta
                BighornSheep  ttttcattcctta
                BarbarySheep  ttttcattcctta
                      Bharal  ttttcattcctta
               IndianMuntjac  ttttcattcctta
               ReevesMuntjac  ttttcattcctta
              PereDavidsDeer  ttttcattcctta
             WhiteLippedDeer  ttttcattcctta
                 YarkandDeer  ttttcattcctta
                     RedDeer  ttttcattcctta
                     HogDeer  ttttcattcctta
             WhiteTailedDeer  ttttcattcctta
                    MuleDeer  ttttcattcctta
                    Reindeer  ttttcattcctta
              EasternRoeDeer  ttttcattcctta
              WesternRoeDeer  ttttcattcctta
                 EurasianElk  ttttcattcctta
            ChineseWaterDeer  ttttcattcctta
                       Okapi  ttttcattcctta
                     Giraffe  ttttcattcctta
                   Pronghorn  ttttcattcctta
               JavaMouseDeer  ttttcatccctta
             LesserMouseDeer  ttttcatccctta
                  ZebuCattle  ttttcattcctta
                        Gaur  ttttcattcctta
                    Steenbok  ttttcattcctta
          PrzewalskisGazelle  ttttcattcctta
               RoyalAntelope  ttttcattcctta
                 KirksDikDik  ttttcattcctta
                      Herola  ttttcattcctta
              MaxwellsDuiker  ttttcattcctta
               HarveysDuiker  ttttcattcctta
                       Oribi  ttttcattcctta
             ThomsonsGazelle  ttttcattcctta
                     Gerenuk  ttttcattcctta
                       Saiga  ttttcattcctta
                   Springbok  ttttcattcctta
                CommonDuiker  ttttcattcctta
               BohorReedbuck  ttttcattcctta
            DefassaWaterbuck  ttttcattcctta
                      Lechwe  ttttcattcctta
                     Gemsbok  ttttcattcccta
          ScimitarHornedOryx  ttttcattcccta
                RoanAntelope  ttttcattcctta
               SableAntelope  ttttcattcccta
              BlueWildebeest  ttttcattcctta
                        Topi  ttttcattcctta
         GreaterHorseshoeBat  tgttcattccttc
     WesternEuropeanHedgehog  tgctcattcttac
                  HouseMouse  tgttcattctttt
            ChineseTreeShrew  tgttcatttcttc
                      Alpaca  tgttcattccttc
           WildBactrianCamel  tgttcattccttc
                ArabianCamel  tgttcattccttc
                         Dog  cggtcgttcttta
                  MinkeWhale  ttttcattcctta
                 KillerWhale  ttttcattcctta
                  SpermWhale  ttttcattcctta
              ChacoanPeccary  cgttcattccttc

Alignment block 43 of 179 in window, 6280925 - 6280930, 6 bps 
B D             ARS_UCD_addY  atagaa
                      Rabbit  ccagaa
                       Horse  atagaa
             ChinesePangolin  acagaa
                       Human  atagaa
                    Aardvark  atagaa
                   BlueWhale  atagaa
     CommonBottlenoseDolphin  atagaa
                 BelugaWhale  atagaa
                         Pig  acagaa
              FloridaManatee  atagag
                     Tuatara  gagcag
                       Gayal  atagaa
               AmericanBison  atagaa
                  LesserKudu  atagaa
                 CommonEland  atagaa
                     WildYak  atagaa
                 DomesticYak  atagaa
                 GreaterKudu  atagaa
                    Bushbuck  atagaa
                       Bongo  atagaa
                      Impala  atagaa
                        Suni  atagaa
                Klipspringer  atagaa
                WaterBuffalo  atagaa
              AfricanBuffalo  atagaa
                   Sitatunga  atagaa
               MountainNyala  atagaa
                 NilgiriTahr  atagaa
B D                     ARS1  atagaa
                    WildGoat  atagaa
                SiberianIbex  atagaa
              AlpineMuskDeer  atagaa
       ChineseForestMuskDeer  atagaa
            SiberianMuskDeer  atagaa
                BlackMuntjac  atagaa
                MountainGoat  atagaa
                       Sheep  atagaa
             EuropeanMouflon  atagaa
              AsiaticMouflon  atagaa
                   SnowSheep  atagaa
                BighornSheep  atagaa
                BarbarySheep  atagaa
                      Bharal  atagaa
               IndianMuntjac  atagaa
               ReevesMuntjac  atagaa
              PereDavidsDeer  atagaa
             WhiteLippedDeer  atagaa
                 YarkandDeer  atagaa
                     RedDeer  atagaa
                     HogDeer  atagaa
             WhiteTailedDeer  atagaa
                    MuleDeer  atagaa
                    Reindeer  atagaa
              EasternRoeDeer  atagaa
              WesternRoeDeer  atagaa
                 EurasianElk  atagaa
            ChineseWaterDeer  atagaa
                       Okapi  atagaa
                     Giraffe  atagaa
                   Pronghorn  atagaa
               JavaMouseDeer  atagaa
             LesserMouseDeer  atagaa
                  ZebuCattle  atagaa
                        Gaur  atagaa
                    Steenbok  agagaa
          PrzewalskisGazelle  atagaa
               RoyalAntelope  atagaa
                 KirksDikDik  atagaa
                      Herola  atagaa
              MaxwellsDuiker  atagaa
               HarveysDuiker  atagaa
                       Oribi  accgaa
             ThomsonsGazelle  atagaa
                     Gerenuk  atagaa
                       Saiga  atagaa
                   Springbok  atagaa
                CommonDuiker  atagaa
               BohorReedbuck  ctcgaa
            DefassaWaterbuck  ctagaa
                      Lechwe  ctcgaa
                     Gemsbok  atagaa
          ScimitarHornedOryx  atagaa
                RoanAntelope  atagaa
               SableAntelope  atagaa
              BlueWildebeest  atagaa
                        Topi  atagaa
         GreaterHorseshoeBat  atagaa
     WesternEuropeanHedgehog  atggga
                  HouseMouse  acaaaa
            ChineseTreeShrew  atagaa
                      Alpaca  atagaa
           WildBactrianCamel  atagaa
                ArabianCamel  atagaa
                         Dog  gtgcac
                  MinkeWhale  atagaa
                 KillerWhale  atagaa
                  SpermWhale  atagaa
              ChacoanPeccary  atagaa

Alignment block 44 of 179 in window, 6280931 - 6280975, 45 bps 
B D             ARS_UCD_addY  ttttccttagtccacagttctctgg-aaagga------agtaggcttctcat
                      Rabbit  ttttccttagcctgcagttccttgg-aagggg------agcagattcttcac
                       Horse  ttttccttagttcacagttttctgg-aaaaga------agtagattcctcat
             ChinesePangolin  -tttcctaagtccacagttctctgg-aaagga--------tagattcttcat
                       Human  ccttcctttgtccatagttctctgg-aagggg------aatagattcctgat
                    Aardvark  ttttctttagtccacccttctctggaaaaaag------agtagattccttat
                   BlueWhale  ttttccttagtccacagttctctgg-agagga------agtaggttcctcct
     CommonBottlenoseDolphin  ttttccttagtccacagttctctgg-agagga------agtaggttcctcct
                 BelugaWhale  ttttccttagtccacagttctctgg-agagga------agtaggttcctcct
                         Pig  ttttctttagtctacagttttctag-aaagga------agtaggtttctcat
              FloridaManatee  ttttccttagtccacagttccttgg-aaaggc------agtagatttcttat
                       Gayal  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
               AmericanBison  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                  LesserKudu  ttttccttagtccacagttctctgg-aaaaga------agtaggctgctcat
                 CommonEland  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                     WildYak  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                 DomesticYak  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                 GreaterKudu  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                    Bushbuck  ttttccttagtccacagttctctgg-aaagga------agtcggctgctcat
                       Bongo  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                      Impala  ttttccttagtccacatttctccgg-aaagga------agtaggctgctcat
                        Suni  tttgccttagtccacagttctctgg-aaagga------agtaggctgctcat
                Klipspringer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                WaterBuffalo  ttttccttagtccacagctctctgg-aaagga------agtaggctgctcat
              AfricanBuffalo  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                   Sitatunga  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
               MountainNyala  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                 NilgiriTahr  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
B D                     ARS1  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                    WildGoat  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                SiberianIbex  ttttccttagtccacagttctccgg-aaagga------agtaggctgctcat
              AlpineMuskDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
       ChineseForestMuskDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
            SiberianMuskDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                BlackMuntjac  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                MountainGoat  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                       Sheep  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
             EuropeanMouflon  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
              AsiaticMouflon  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                   SnowSheep  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                BighornSheep  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                BarbarySheep  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                      Bharal  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
               IndianMuntjac  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
               ReevesMuntjac  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
              PereDavidsDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
             WhiteLippedDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                 YarkandDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                     RedDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                     HogDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
             WhiteTailedDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                    MuleDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                    Reindeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
              EasternRoeDeer  ttttccttagtccacagttctctgg-aaagga------agtaggcagctcat
              WesternRoeDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                 EurasianElk  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
            ChineseWaterDeer  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                       Okapi  ttttccttagtcctcagttctctgg-aaagga------agtaggcagctcat
                     Giraffe  ttttccttagtcctcagttctctgg-aaagga------agtaggcagctcat
                   Pronghorn  tttttcttagtccacagttctctgg-aaagga------agtaggctgctcat
               JavaMouseDeer  ttttccttagtccacagctctgtgg-agagga------agttggctgctcat
             LesserMouseDeer  ttttccttagtccacagctctgtgg-agagga------agttggctgctcat
                  ZebuCattle  ttttccttagtccacagttctctgg-aaagga------agtaggcttctcat
                        Gaur  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                    Steenbok  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
          PrzewalskisGazelle  ttttccttagtccactgtgctctgg-aaagga------agtaggctgctcat
               RoyalAntelope  ttttccttagtccacagtcctctgg-aaagga------agtaggctgctcat
                 KirksDikDik  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                      Herola  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
              MaxwellsDuiker  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
               HarveysDuiker  ttttccttagtccacggttctttgg-aaagga------agtaggctgctcat
                       Oribi  ttttccttagtccacagttctctgg-aaagaa------agcaggctgctcaa
             ThomsonsGazelle  tttcccttagtccacagttctctga-aaagga------agtaggctgttcat
                     Gerenuk  tttcccttagtccacagttctctgg-aaagga------agtaggctgttcat
                       Saiga  tttcccttagtccacagttctctgg-aaagga------agtaggctgttcat
                   Springbok  tttcccttagtccacagttctctgg-aaagga------agtaggctgttcat
                CommonDuiker  ttttccttagtccacagttctttgg-aaagga------agtaggctgctcat
               BohorReedbuck  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
            DefassaWaterbuck  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                      Lechwe  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                     Gemsbok  ttttccttagtcctcagttctctga-aaagga------agtaggctgctcat
          ScimitarHornedOryx  ttttccttagtcctcagttctctga-aaagga------agtaggctgctcat
                RoanAntelope  ttttccttagtccacagttctctga-aaagga------agtaggctgctcat
               SableAntelope  ttttccttagtccacagttctctga-aaagga------agtaggctgctcat
              BlueWildebeest  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
                        Topi  ttttccttagtccacagttctctgg-aaagga------agtaggctgctcat
         GreaterHorseshoeBat  ttttccttcgtccataattatctgg-aaaggg------agtggatccttcat
     WesternEuropeanHedgehog  atgttctcagtcgccagatctcttg--gaggg------tgtagagtccttag
                  HouseMouse  tatcccttagcccagagttctctgg-aagggg------agtagaatctacat
            ChineseTreeShrew  ----ctttagtccacagttctctgg-gaaggggagggcagtaggttcctcat
                      Alpaca  ttttccttagttcacagttctctgg-aaagga------agtaggttcctcat
           WildBactrianCamel  ttttccttagttcacagttctctgg-aaagga------agtaggttcctcat
                ArabianCamel  ttttccttagttcacagttctctgg-aaagga------agcaggttcctcat
                         Dog  ttcacgctaaccc-cggatccctgg-ggaggg------agcagagacctccg
                  MinkeWhale  ttttccttagtccacagttctctgg-agagga------agtaggatactcct
                 KillerWhale  ttttccttagtccacagttctctgg-agagga------agtaggttcctcct
                  SpermWhale  ttttccttagtccacaattctctgg-agagga------agtaggttcctcct
              ChacoanPeccary  ttttttttagtccacagttttctgg-aaagga------agtaggtttctcat

Alignment block 45 of 179 in window, 6280976 - 6281116, 141 bps 
B D             ARS_UCD_addY  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                      Rabbit  aatggttgaaagtacctatgtc----t-aaagaattctgaaaagccagactaattatt-ttccttga-ta
                       Horse  aacagctgaaaaa--acatata----t-caaaaattctgaaaggctagagtaattata-ttctttga-ta
             ChinesePangolin  agcagctaaaaaa-tatgtatc----t-aaaaaattctgaaatgccatattaattatc-ttatttgc-ta
                       Human  aacagctgaaaatacatacgtc----t-gaaaaattctgaaaagctagggtaattatt-ttctttga-ca
                    Aardvark  aataaatgaaaaggcatacatc----t-aaaaagttctgaaaagctggagtaattatt-tgattt-----
                   BlueWhale  aacagctgaaaaaacatacatc----t-aaggaaatctgaaaagctatagtaattatt-ttatttga-ta
     CommonBottlenoseDolphin  aacagctgaaaaaacatacatc----t-aagaaaatctgaaaagctatagtaattatt-ttatttga-ta
                 BelugaWhale  aacagctgaaaaaacatacatc----t-aagaaaatctgaaaagctatagtaattatt-ttatttga-ta
                         Pig  aacagctgaaaaaacat--att----g-aaaaaaatctgaaaagctatagtaattatt-tcatttga-ta
              FloridaManatee  aacaaatgaaaaaacatatatc----t-agaaagttctggaaagctagagtaattgtt-ttctttga-tt
                       Gayal  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
               AmericanBison  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                  LesserKudu  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                 CommonEland  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                     WildYak  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                 DomesticYak  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                 GreaterKudu  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                    Bushbuck  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                       Bongo  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgttaacacttga-ta
                      Impala  aacagctgaaaaaacatatacc----t-aaaagagtttgaaaagctgtaataattgtt-atacttga-ta
                        Suni  aacagctgaaaaaacatatacc----t-aaaagagtttgaaaagctgtaataattgtt-gtacttga-ta
                Klipspringer  aacagctgaaaaaacgtatacc----t-aaaagattttgaaaagctgtaataattgtt-atatttga-ta
                WaterBuffalo  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atagttga-ta
              AfricanBuffalo  aacagctgaaaaaacatatacc----t-taaagattctgaaaagctgtaataactgtt-atacttga-ta
                   Sitatunga  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-acacttga-ta
               MountainNyala  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-acacttga-ta
                 NilgiriTahr  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
B D                     ARS1  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                    WildGoat  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                SiberianIbex  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
              AlpineMuskDeer  aacagctgaaaaaacacatacc----t-aaaagattctgaaaagct---ataattctt-atacttca-ta
       ChineseForestMuskDeer  aacagctgaaaaaacacatacc----t-aaaagattctgaaaagct---ataattctt-atacttca-ta
            SiberianMuskDeer  aacagctgaaaaaacacatacc----t-aaaagattctgaaaagct---ataattctt-atacttca-ta
                BlackMuntjac  aacatctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                MountainGoat  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
                       Sheep  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
             EuropeanMouflon  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
              AsiaticMouflon  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
                   SnowSheep  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
                BighornSheep  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
                BarbarySheep  aacagctgaaaaaacatatacc----t-aaaagattttgacaagctgtaataattgtt-atacttga-ta
                      Bharal  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
               IndianMuntjac  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-gtacttga-ta
               ReevesMuntjac  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-gtacttga-ta
              PereDavidsDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
             WhiteLippedDeer  aacagctgaaaaaacatgtacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                 YarkandDeer  aacagctgaaaaaacatgtacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                     RedDeer  aacagctgaaaaaacatgtacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                     HogDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
             WhiteTailedDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                    MuleDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                    Reindeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
              EasternRoeDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataattgtt-atacttga-ta
              WesternRoeDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                 EurasianElk  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
            ChineseWaterDeer  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                       Okapi  aacagctgaaaaaccatgcacc----t-aaaagattctggaaagctataataattgtt-atacttga-ta
                     Giraffe  aacagctgaaaaaacatacacc----t-aaaagattctgaaaagctataataattgtt-atacttga-ta
                   Pronghorn  aacagctgaaaaaagatatacc----t-aaaagactctgaaaagctataataattgtt-atacttga-ta
               JavaMouseDeer  aacagctgaaaaaacatgtatg----t-aaaaaa-tctgaaaagctatagtaattatt-ttacttga-ta
             LesserMouseDeer  aacagctgaaaaaacatgtatg----t-aaaaaa-tctgaaaagctatagtaattatt-ttacttga-ta
                  ZebuCattle  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaataactgtt-atacttga-ta
                        Gaur  aacagctgaaaaaacatatacc----t-aaaagattctgaaaagctgtaagaactgtt-atacttga-ta
                    Steenbok  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgct-atatttga-ta
          PrzewalskisGazelle  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
               RoyalAntelope  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-ttacttga-ca
                 KirksDikDik  aacag-tgaaaaaacacatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                      Herola  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
              MaxwellsDuiker  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
               HarveysDuiker  aacagctgaaaaaacatatacc----t-aaaagatttggaaaagctgtaataattgtt-atacttga-ta
                       Oribi  aacagatgaaaaatcatatacc----t-aaaatattttgaaaagctgtaataattgtt-atacttga-ta
             ThomsonsGazelle  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaagaattgtt-atacttga-ta
               GrantsGazelle  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaagaattgtt-atacttga-ta
                     Gerenuk  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctataataattgtt-atacttga-ta
                       Saiga  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                   Springbok  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgcaataattgtt-atacttga-ta
                CommonDuiker  aacagctgaaaaaacatatacc----t-aaaagatttggaaaagctgtaataattgtt-atacttga-ta
               BohorReedbuck  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
            DefassaWaterbuck  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                      Lechwe  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                     Gemsbok  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
          ScimitarHornedOryx  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                RoanAntelope  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
               SableAntelope  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
              BlueWildebeest  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
                        Topi  aacagctgaaaaaacatatacc----t-aaaagattttgaaaagctgtaataattgtt-atacttga-ta
         GreaterHorseshoeBat  aacagctgaaaaaacatgtatc----a-aaaaaattctgaaaagctagagtaattatt-ttctttga-ta
     WesternEuropeanHedgehog  cacagctgaaaaaacactca-c----t-gaaaaattctgaaaagtta----aattctt-tccttggg-ta
                  HouseMouse  aacaggtgaaaatacagatgtcaaaaa-aaaaaattctgaaaagctagagcaactatt-ttctctga-tg
            ChineseTreeShrew  aacagttgaaaatacagatacc----t-accaaattctaaaaagctaga------att-ttctttga-ta
                      Alpaca  aacagctgaaaaaaaatagagc----c--aaaaattctaaacagctatagtagctatt-ttgtttga-ta
           WildBactrianCamel  aacagctgaaaaaaaatagagc----c--aaaaattctaaacagctatagtagctatt-ttgtttgattt
                ArabianCamel  aacagctgaaaaaaaatagagc----c--aaaaattctaaacagctatagtagctatt-ttgtttga-tt
                         Dog  aaaagctgaaaaaatacgtatc----tgaaaaaactctgcaaagctggaacaattatt-ttctttga-ta
                  MinkeWhale  aacagctgaaaaaacatacatc----t-aagaaaatctgaaaagctatagtaattatt-ttatttga-ta
                 KillerWhale  aacagctgaaaaaacatacatc----t-aagaaaatctgaaaagctatagtaattatt-ttatttga-ta
                  SpermWhale  aacagctgaaaaaacatacatc----t-aagaaaatctgaaaagctacagtaattat-----tttga-ta
              ChacoanPeccary  aacagctgagaaaacatatact----g-aaaaaaatctg-aaagctatagtaattat-----tttgt-ta

                ARS_UCD_addY  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                      Rabbit  --ttttctcg-----------gtattatgaatgaagttttaccta---gtatttcatt-----------t
                       Horse  --tttt-tct-----------gagttatgaatgaaattctacata---gtttttcactttaaaaga-c-t
             ChinesePangolin  --tttt-tct-----------gaattatgaatgagattctacata---gtttttcactttaaaaaa-c-t
                       Human  --tttt-ttt-----------gagtt----ataaagttccacacg---gtatttcattttaaaaga-c-t
                    Aardvark  --tttt-tct-----------gagttatgaatgaagtgtttcaaa---atacttaattttaaaata-a-t
                   BlueWhale  --gttt-tct-----------gagttatgaatgaaattctacatatt-ttttttcattttaaaaga-c-t
     CommonBottlenoseDolphin  --gttt-tct-----------gagttatgaatgaaattctacagatt-ttttttcattttaaaaga-c-t
                 BelugaWhale  --gttt-tct-----------gagttatgaatgaaattctacatatttttttttcattttaaaaga-c-t
                         Pig  --tttt-tct-----------gaattatgaatgaaattctaca-----gtttttcattttaaaaga-c-t
              FloridaManatee  --tttt-tct-----------gagttatgaatgaacttctacata---gaatttaattttaaaaga-c-t
                       Gayal  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               AmericanBison  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-t-t
                  LesserKudu  --tttt-gcc-------------attatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                 CommonEland  --tttt-gcc-------------attatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                     WildYak  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                 DomesticYak  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                 GreaterKudu  --tttt-gcc-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                    Bushbuck  --tttt-gcc-------------attatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                       Bongo  --tttt-gcc-------------attatgaatgaagtgctacata---tttttccattttaaaaga-c-t
                      Impala  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                        Suni  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaagaga-c-t
                Klipspringer  --tttt-gct-------------gttatgaatgaaatgctgcata---tttttctattttaaaaga-c-t
                WaterBuffalo  --tttt-gct-------------gttatgaatgaaatgctacata---tttttctattttaaaaga-c-t
              AfricanBuffalo  --attt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                   Sitatunga  --tttt-gcc-------------attatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               MountainNyala  --tttt-gcc-------------attatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                 NilgiriTahr  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaaa-c-t
                        ARS1  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaagg-c-t
                    WildGoat  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaagg-c-t
                SiberianIbex  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
              AlpineMuskDeer  --tttt-gct-------------gttatgaatgaaattctacata---tttttccactttaaaaga-c-t
       ChineseForestMuskDeer  --tttt-gct-------------gttatgaatgaaattctacata---tttttccactttaaaaga-c-t
            SiberianMuskDeer  --tttt-gct-------------gttatgaatgaaattctacata---tttttccactttaaaaga-c-t
                BlackMuntjac  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
                MountainGoat  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                       Sheep  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
             EuropeanMouflon  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
              AsiaticMouflon  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                   SnowSheep  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                BighornSheep  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                BarbarySheep  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                      Bharal  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               IndianMuntjac  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
               ReevesMuntjac  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
              PereDavidsDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttccattttaaaaga-c-t
             WhiteLippedDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                 YarkandDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                     RedDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                     HogDeer  --tttt-gct-------------gtcatgaatgaaatgctacaaa---tttttccattttaaaaga-c-t
             WhiteTailedDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
                    MuleDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
                    Reindeer  --tttt-gct-------------gccatgaatgaaatgctacata---tttttacattttaaaaga-c-t
              EasternRoeDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
              WesternRoeDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
                 EurasianElk  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
            ChineseWaterDeer  --tttt-gct-------------gtcatgaatgaaatgctacata---tttttacattttaaaaga-c-t
                       Okapi  --tttt-gct-------------gttatgaatgaaattctacata---tttttccattttaaaaga-c-t
                     Giraffe  --tttt-gct-------------gttatgaatgaaattctacata---tttttccattttaaaaga-c-t
                   Pronghorn  --tttt-gct-------------gttatgaatgaaattatacata---tttttccattttaaagga-c-t
               JavaMouseDeer  --tttt-tct-----------gagttatgaatgaaattctacata---ttttttcattttaaaaga-c-t
             LesserMouseDeer  --tttt-tct-----------gagttatgaatgaaattctacata---ttttttcattttaaaaga-c-t
                  ZebuCattle  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                        Gaur  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                    Steenbok  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
          PrzewalskisGazelle  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               RoyalAntelope  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                 KirksDikDik  --tttt-gct-------------gttataaatgaaatgttacata---tttttccattttaaaaga-c-t
                      Herola  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
              MaxwellsDuiker  --tttt-gct-------------gtgatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               HarveysDuiker  --tttt-gct-------------gtgatgaatgaaatgctacata---cttttccattttaaaaga-c-t
                       Oribi  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
             ThomsonsGazelle  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               GrantsGazelle  --tttt-gct-------------gttatgaatgaaacgctacata---tttttccattttaaaaga-c-t
                     Gerenuk  --tttt-gct-------------gttatgaatgaaatggtacata---tttttccattttaaaaga-c-t
                       Saiga  --tttt-gct-------------gttatgaatgaaatgctacatat--tttttccattttaaaaga-c-t
                   Springbok  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                CommonDuiker  --tttt-gct-------------gtgatgaatgaaatgctacata---cttttccattttaaaaga-c-t
               BohorReedbuck  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
            DefassaWaterbuck  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-ctt
                      Lechwe  --tttt-gct-------------gttatgaatgaaatgctacata---ttttaccattttaaaaga-c-t
                     Gemsbok  --tttt-gct-------------gttatgaatgaaatgccacata---tttttccattttaaaaga-c-t
          ScimitarHornedOryx  --tttt-gct-------------gttatgaatgaaatgccacata---tttttccattttaaaaga-c-t
                RoanAntelope  --tttt-gct-------------gatatgaatgaaatgctacata---tttttccattttaaaaga-c-t
               SableAntelope  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
              BlueWildebeest  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
                        Topi  --tttt-gct-------------gttatgaatgaaatgctacata---tttttccattttaaaaga-c-t
         GreaterHorseshoeBat  -ttttt-tct-----------gagttatgaatgaaattctac--a---gttttttattttaaaaga-c-t
     WesternEuropeanHedgehog  -ttttt-ttgggggaggggaagagttatgaatgaaattctac--c---attctctgtttccaaaga-c-t
                  HouseMouse  -tttct-tct-----------gaactatgaatgaagttccacata---atattttattttaaaaga-c-c
            ChineseTreeShrew  tttttt-tct-----------gtgttataaatgaaactatacata---gtatttcattttaaaaaagg-c
                      Alpaca  --tttt-ttt-----------gagttatgaatgaaattctacata---gtttttcacttaagaaga-c-t
           WildBactrianCamel  --tttt-ttt-----------gagttatgaatgaaattctacata---gtttttcacttaagaaga-c-t
                ArabianCamel  --tttt-ttt-----------gagttatgaatgaaattctacata---gtttttcacttaagaaga-c-t
                         Dog  --tttt-tct-----------gatttatgaatgaaattctgcatg---gtttttcactttaa--------
                  MinkeWhale  --gttt-tct-----------gagttatgaatgaaattctacatatt-ttttttcattttaaaaga-c-t
                 KillerWhale  --gttt-tct-----------gagttatgaatgaaattctacatatt-ttttttcattttaaaaga-c-t
                  SpermWhale  --gttt-tct-----------gagttatgaatgaaattctacatatt-ttttttcattttaaaaga-c-t
              ChacoanPeccary  ---ttt-ttt-----------gaattatgaatgaaattctaca-----atttttaattttaaaaga-c-t

                ARS_UCD_addY  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                      Rabbit  acatatgcatgcat--tatcccaa-ta--g--a---aaaa
                       Horse  aaatatatattcag--tattccaa-tg--gaaa---aaaa
             ChinesePangolin  aaaaatgcattcat--cattccaa-tg--g--a---aaaa
                       Human  gcataggcatacat--tatcttaattt--a--a---aaaa
                    Aardvark  gt----gcaca-----taattcacatg--g--g---aaac
                   BlueWhale  agttgtgcacacat--tattccaa-t----------aaac
     CommonBottlenoseDolphin  aaatgtgcacacat--tattccaa-t----------aaac
                 BelugaWhale  aaatgtgcacacat--tattccaa-t----------aaac
                         Pig  aaatatgcatgcac--tattccaa-ta--g--a---aaaa
              FloridaManatee  gcatatgtatacat--tattcaaa-ta--a--g---aaaa
                       Gayal  aaatatgcacacat--tattccaa-tta-a--a---aaa-
               AmericanBison  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                  LesserKudu  aaatatgcacacat--tattccaa-tt-----a---aaa-
                 CommonEland  aaatatgcacacat--tattccaa-tt-----a---aaa-
                     WildYak  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                 DomesticYak  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                 GreaterKudu  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                    Bushbuck  aaatatgcacacat--tattccaa-tt-----a---aaa-
                       Bongo  aaatatgcacacat--tattccaa-tt-----a---aaa-
                      Impala  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                        Suni  aaatatgcatacat--tattccaa-tt--t--a---aaa-
                Klipspringer  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                WaterBuffalo  aaatatgcacacat--tattccaa-tt--a--a---aaa-
              AfricanBuffalo  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                   Sitatunga  aaatatgcacacat--tattccaa-tt-----a---aaa-
               MountainNyala  aaatatgcacacat--tattccaa-tt-----a---aaa-
                 NilgiriTahr  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                        ARS1  aaatatgcacacag--tattccaa-tt-----a---aaa-
                    WildGoat  aaatatgcacacat--tattccaa-tt-----a---aaa-
                SiberianIbex  aaatatgcacacat--tattccaa-tt--a--a---aaa-
              AlpineMuskDeer  aaatatgcacacat--tattccaa-ta-----a---aaa-
       ChineseForestMuskDeer  aaatatgcacacat--tattccaa-ta-----a---aaa-
            SiberianMuskDeer  aaatatgcacacat--tattccaa-ta-----a---aaa-
                BlackMuntjac  aaatatgcacacat--tattccac-ta-----a---aaa-
                MountainGoat  aaatatgcacacat--tattccaa-tt--t--a---aaa-
                       Sheep  aaatatgcacacat--tattccaa-tt--t--a---aaa-
             EuropeanMouflon  aaatatgcacacat--tattccaa-tt--t--a---aaa-
              AsiaticMouflon  aaatatgcacacat--tattccaa-tt--t--a---aaa-
                   SnowSheep  aaatatgcacacat--tattccaa-tt--t--a---aaa-
                BighornSheep  aaatatgcacacat--tattccaa-tt--t--a---aaa-
                BarbarySheep  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                      Bharal  aaatatgcacacat--tattccaa-tt--a--a---aaa-
               IndianMuntjac  aaatatgcacacat--tattccac-t---a--a---aaa-
               ReevesMuntjac  aaatatgcacacat--tattccac-t---a--a---aaa-
              PereDavidsDeer  aaatatgcacatgt--tcttccac-t---a--a---aaa-
             WhiteLippedDeer  aaatatgcacacat--ttttccac-t---a--a---aaa-
                 YarkandDeer  aaatatgcacacat--tcttccac-t---a--a---aaa-
                     RedDeer  aaatatgcacacat--tcttccac-t---a--a---aaa-
                     HogDeer  aagtatgcacacat--tcttccac-t---a--a---aaa-
             WhiteTailedDeer  aaatatgcacacat--tattccac-t---a--a---aaa-
                    MuleDeer  aaatatgcacacat--tattccac-t---a--a---aaa-
                    Reindeer  aaatatgcacacat--tattccac-t---a--a---aaa-
              EasternRoeDeer  aaatatgcacacat--gattccac-ta--a--a---aaa-
              WesternRoeDeer  aaatatgcacacat--gattccac-ta--a--a---aaa-
                 EurasianElk  aaatatgcacacat--tattccac-t---a--a---aaa-
            ChineseWaterDeer  aaatatgcacacat--tattccac-t---a--a---aaa-
                       Okapi  aaatatgcacacat--tattccaa-t---a--a---aaa-
                     Giraffe  aaatatgcacacat--tattccaa-t---a--a---aaa-
                   Pronghorn  aaatatgcacacat--tattccaattt---------aaa-
               JavaMouseDeer  aaatatgcacatat--tattccaa-cc---------aaa-
             LesserMouseDeer  aaatatgcacatat--tattccaa-cc---------aaa-
                  ZebuCattle  aaatatgcacacat--tattccaa-tt-----t---aaa-
                        Gaur  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                    Steenbok  aaatatgcacacat--tattccaa-tt--t--a---aaa-
          PrzewalskisGazelle  aaatatgcacacat--tattccaa-tt--a--a---aaa-
               RoyalAntelope  aaatatgcacacat--tattccaa-tt--t--a---aaa-
                 KirksDikDik  aaatatgcacacat--tattccaa--t--t--a---taa-
                      Herola  aaatatgcacacat--tattccaa-tt--t--a---aaa-
              MaxwellsDuiker  aaatatgcacacgt--tattccaa-tt--a--a---aaa-
               HarveysDuiker  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                       Oribi  aaatatgcacacat--tattccaa-tt--a--a---aaa-
             ThomsonsGazelle  aaacatgcacacat--tattccaa-tt--a--a---aaa-
               GrantsGazelle  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                     Gerenuk  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                       Saiga  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                   Springbok  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                CommonDuiker  aaatatgcacacat--tattccaa-tt--a--a---aaa-
               BohorReedbuck  aaatatgcacacat--tgttccaa-tt-aa--a---aaa-
            DefassaWaterbuck  aaatatgcacacat--tgttccag-tt-aa--a---aaa-
                      Lechwe  aaatatgcacacac--tgttccag-ttaaa--a---aaa-
                     Gemsbok  aaatatgcacacat--tattccaa-tt--a--a---aaa-
          ScimitarHornedOryx  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                RoanAntelope  aaatatgcacacat--tattccaa--t--t--a---aaa-
               SableAntelope  aaatatgcacacat--tattccaa-tt--t--a---aaa-
              BlueWildebeest  aaatatgcacacat--tattccaa-tt--a--a---aaa-
                        Topi  aaatatgcacacat--tattccaa-tt--t--a---aaa-
         GreaterHorseshoeBat  agatatgcaatcat--tcatccca-ta--g--a---aaa-
     WesternEuropeanHedgehog  aaatgtgcattcgt--tagtccaa-ta--g--a---aaa-
                  HouseMouse  acatacgtacacac--tacccca-----------------
            ChineseTreeShrew  aaaaatgtacatataatatcccag-tg--t--g---tat-
                      Alpaca  -aatatgtatttat--ta-ttcaa-ta--g--a---aaa-
           WildBactrianCamel  -aataagtatttat--ta-ttcaa-ta--g--a---aaa-
                ArabianCamel  -aataagtatttat--ta-ttcaa-ta--g--a---aaa-
                         Dog  -aatatgcattcac--tagtccaa-tg--g--ggacaaa-
                  MinkeWhale  aaatatgcacacat--tattccaa-t------a---aac-
                 KillerWhale  aaatgtgcacacat--tattccaa-c------a---aac-
                  SpermWhale  aaatgtgcacacat--tattccaa-t------a---aac-
              ChacoanPeccary  aaatatgcatactt--tattccaa-ca--gaaa---aaa-

Alignment block 46 of 179 in window, 6281117 - 6281136, 20 bps 
B D             ARS_UCD_addY  atgttcatagattgatatgg
                      Rabbit  atacccaactattagtaagg
                       Horse  atgttcaccaactaatatgg
             ChinesePangolin  atgctcaccaattaatataa
                       Human  atgctcaactattaatatgg
                    Aardvark  aagcccaccaattaatacga
                   BlueWhale  atgctcattgattaatatgg
     CommonBottlenoseDolphin  atgctcattgattaatatgg
                 BelugaWhale  atgctcattgattaatatgg
                         Pig  aagctcactgattaatatga
              FloridaManatee  atgtccaccaattaa-----
                       Gayal  atgttcatagattgatatgg
               AmericanBison  atgttcatagattgatatgg
                  LesserKudu  atgttcatagattgatatgg
                 CommonEland  atgttcatagattgatatgg
                     WildYak  atgttcatagattgatacgg
                 DomesticYak  atgttcatagattgatacgg
                 GreaterKudu  atgttcatagattgatatgg
                    Bushbuck  atgttcatagattgatatgg
                       Bongo  atgttcatagattgatatgg
                      Impala  atgttcatagattgacgtgg
                        Suni  atgttcatagattgatatgg
                Klipspringer  atgttcatagattgacatgg
                WaterBuffalo  atgttcatagattgatatgg
              AfricanBuffalo  atgttcatagattgatatgg
                   Sitatunga  atgttcatagattgatatgg
               MountainNyala  atgttcatagattgatatgg
                 NilgiriTahr  atgttcatagattgacatgg
B D                     ARS1  atgttcatagattgacatgg
                    WildGoat  atgttcatagattgacatgg
                SiberianIbex  atgttcatagatggacatgg
              AlpineMuskDeer  atgctcatagattgacatga
       ChineseForestMuskDeer  atgctcatagattgacatga
            SiberianMuskDeer  atgctcatagattgacatga
                BlackMuntjac  atgctcatagattgacatgg
                MountainGoat  atgttcatagattgacgtgg
                       Sheep  atgttcatagattgacatgg
             EuropeanMouflon  atgttcatagattgacatgg
              AsiaticMouflon  atgttcatagattgacatgg
                   SnowSheep  atgttcatagattgacatgg
                BighornSheep  atgttcatagattgacatgg
                BarbarySheep  atgttcatagattgacacgg
                      Bharal  atgttcatagattgacatgg
               IndianMuntjac  atgctcatagattgacatgg
               ReevesMuntjac  atgctcatagattgacatgg
              PereDavidsDeer  atgctcatagattgacatgg
             WhiteLippedDeer  atgctcatagattgacatgg
                 YarkandDeer  atgctcatagattgacatgg
                     RedDeer  atgctcatagattgacatgg
                     HogDeer  atgctcatagattgacatgg
             WhiteTailedDeer  atgctcatagattgacatgg
                    MuleDeer  atgctcatagattgacatgg
                    Reindeer  atgctcatagattgacatgg
              EasternRoeDeer  atgctcatagattgacatgg
              WesternRoeDeer  atgctcatagattgacatgg
                 EurasianElk  atgctcatagattgtcatgg
            ChineseWaterDeer  atgctcatagattgacatgg
                       Okapi  atgctcacagattgacatgg
                     Giraffe  atgctcacagattgacatgg
                   Pronghorn  atgctcatagactgacatgg
               JavaMouseDeer  atgctcactgattaacatgg
             LesserMouseDeer  atgctcactgattaacatgg
                  ZebuCattle  atgttcatagattgatatgg
                        Gaur  atgttcatagattgatatgg
                    Steenbok  atgttcatagattgacatgg
          PrzewalskisGazelle  atgttcaaagactgacatgg
               RoyalAntelope  atgttcatagattgacatgg
                 KirksDikDik  atgttcatagattgacatgg
                      Herola  atgttcatagattgacatgg
              MaxwellsDuiker  atgttcatagattgacatgg
               HarveysDuiker  atgttcatagattgacatgg
                       Oribi  atgttcatagattgacatgg
             ThomsonsGazelle  atgttcatagattgacatgg
               GrantsGazelle  atgttcatagattgacatgg
                     Gerenuk  atgttcatagattgacatgg
                       Saiga  atgttcatagactgacatgg
                   Springbok  atgttcatagattgacatgg
                CommonDuiker  atgttcatagattgacatgg
               BohorReedbuck  atgttcatagattgacatgg
            DefassaWaterbuck  atgttcatagattgacatgg
                      Lechwe  atgttcatagattgacatgg
                     Gemsbok  atgttcctagattgacatgg
          ScimitarHornedOryx  atgttcctagattgacatgg
                RoanAntelope  atgttcatagattgacatgg
               SableAntelope  atgttcatagattgacatgg
              BlueWildebeest  atgttcatagattgacatgg
                        Topi  atgttcatagattgacatgg
         GreaterHorseshoeBat  atgctcaccaattagttatg
                  HouseMouse  ----acagctgatgttaagg
            ChineseTreeShrew  atgcacagctattaatatgg
                      Alpaca  atgctcactgattaatatgg
           WildBactrianCamel  atgctcactgattaatatgg
                ArabianCamel  atgctcactgattaatatgg
                         Dog  aggctcaccaattaacataa
                  MinkeWhale  atgctcattgattaatatgg
                 KillerWhale  atgctcattgattaatatgg
                  SpermWhale  atgctcattgattaatatgg
              ChacoanPeccary  atgctcactgattaatatac

Alignment block 47 of 179 in window, 6281137 - 6281174, 38 bps 
B D             ARS_UCD_addY  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                      Rabbit  a-gggattttgttaa--cttatt--aatgaaaaataatttcagg--aa
                       Horse  a-aggg-tttactaa--ttt-tt--tatgataaataatttcaat--aa
             ChinesePangolin  a-ggag-tttgttca--ttt-ct--tatgagaaaaaacttcaat--aa
                       Human  a-ggggttttg----------tt--aatgggaaataatttcagc--aa
                    Aardvark  a-ggtgttttgttta--ctc-tt--aatggggaataatttcagt--aa
                   BlueWhale  a-ggag-tttattca--tct-gt--catgaaaaatgatttcagt--aa
     CommonBottlenoseDolphin  a-ggac-ttcatgca--tct-gt--catgaaaaatgatttcagt--aa
                 BelugaWhale  a-ggag-tttatgca--tct-gt--catgaaaaatgatttcagt--aa
                         Pig  a-ggag-tttgttca--ttt-tt--catgaaaca--atttcaat--aa
              FloridaManatee  g-gggt-tttgttta--ctt-tt--tatggggaataatttcagt--aa
                       Gayal  a-ggtg-ttcgttcg--ttt-tt--cat-aaaaatgatcttagt--aa
               AmericanBison  a-ggtg-ttcgttcg--ttt-tt--cat-aaaaatgatcttagt--aa
                  LesserKudu  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
                 CommonEland  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
                     WildYak  a-ggtg-ttcgttcg--ttt-tt--cat-aaaaatgatcttagt--aa
                 DomesticYak  a-ggtg-ttcgttcg--ttt-tt--cat-aaaaatgatcttagt--aa
                 GreaterKudu  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
                    Bushbuck  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
                       Bongo  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
                      Impala  a-ggcg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                        Suni  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                Klipspringer  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                WaterBuffalo  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
              AfricanBuffalo  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                   Sitatunga  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
               MountainNyala  a-ggtg-ttcgttca--ttt-tt--cat-gaaaatgatcttagt--aa
                 NilgiriTahr  a-ggcg-tccgttca--ttt-tt--cgt-aaaaatgatcttagt--aa
B D                     ARS1  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                    WildGoat  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                SiberianIbex  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
              AlpineMuskDeer  a-ggcg-ttcgttca--ttt-tt--cat-aaaaattatcttagt--aa
       ChineseForestMuskDeer  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
            SiberianMuskDeer  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                BlackMuntjac  a-ggtg-tttgttca--ttt-tt--cat-aaaaattatctttgt--aa
                MountainGoat  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                       Sheep  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
             EuropeanMouflon  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
              AsiaticMouflon  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                   SnowSheep  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                BighornSheep  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                BarbarySheep  a-ggcg-tgcgttca--ttt-tt--cgt-aaaaatgatcttagt--aa
                      Bharal  a-ggcg-ttcgttcc--ttt-tt--cgt-aaaaatgatcttagt--aa
               IndianMuntjac  a-ggtg-tttgttca--ttt-tt--cat-aaaaattatctttgt--aa
               ReevesMuntjac  a-ggtg-tttgttca--ttt-tt--cat-aaaaattatctttgt--aa
              PereDavidsDeer  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttcct--aa
             WhiteLippedDeer  a-ggtg-tttgttca--ttt-tc--cat-aaaaatgatcttcct--aa
                 YarkandDeer  a-ggtg-tttgttca--ttt-tc--cat-aaaaatgatcttcct--aa
                     RedDeer  a-ggtg-tttgttca--ttt-tc--cat-aaaaatgatcttcct--aa
                     HogDeer  a-ggtg-tttgttca--ttt-tc--cat-aaaaatgatcttcct--aa
             WhiteTailedDeer  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttcgt--aa
                    MuleDeer  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttcgt--aa
                    Reindeer  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttcgt--aa
              EasternRoeDeer  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttcgt--aa
              WesternRoeDeer  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttcat--aa
                 EurasianElk  a-ggcg-tttgttca--ttt-tt--cat-aaaaatgatcttcgt--aa
            ChineseWaterDeer  a-ggca-tttgttcattttt-tt--cat-aaaaatgatcttcgt--aa
                       Okapi  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                     Giraffe  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                   Pronghorn  a-ggcg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
               JavaMouseDeer  a-gggg-tttgctca--ttt-tt--catgaaaaatgatcttagt--aa
             LesserMouseDeer  a-gggg-tttgctca--ttt-tt--catgaaaaatgatcttagt--aa
                  ZebuCattle  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                        Gaur  a-ggtg-ttcgttcg--ttt-tt--cat-aaaaatgatcttagt--aa
                    Steenbok  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--ag
          PrzewalskisGazelle  a-ggcg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
               RoyalAntelope  a-ggtg-tttgttca--ttt-tt--cat-taaaatgatcttagt--aa
                 KirksDikDik  a-ggca-tttgttca--ttt-tt--cat-aaaaatgatcttagttaac
                      Herola  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
              MaxwellsDuiker  a-ggag-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
               HarveysDuiker  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                       Oribi  a-ggca-ttcgttca--ttt-ct--cat-aaaaatgatcttagt--aa
             ThomsonsGazelle  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
               GrantsGazelle  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                     Gerenuk  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                       Saiga  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                   Springbok  a-ggtg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
               BohorReedbuck  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
            DefassaWaterbuck  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                      Lechwe  a-ggtg-tttgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                     Gemsbok  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
          ScimitarHornedOryx  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                RoanAntelope  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
               SableAntelope  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
              BlueWildebeest  a-ggca-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
                        Topi  a-ggcg-ttcgttca--ttt-tt--cat-aaaaatgatcttagt--aa
         GreaterHorseshoeBat  atgggg-gttgttca--ttg-tt--tatgagaaataatttcagt--aa
                  HouseMouse  agtgag-tttatttg--tgt-tt-tgatggggcctgatgtcagt--ca
            ChineseTreeShrew  aaaggt-tttgttca--ttt-ttaaaatgagaaatacttttagt--aa
                      Alpaca  a-gggg-tttgttca---tt-tt--catgaaaaataatctcaat--aa
           WildBactrianCamel  a-gggg-tttgttca---tt-tt--catgaaaaataaactcaat--aa
                ArabianCamel  a-gggg-tttgttca---tt-tt--catgaaaaataatctcaat--aa
                         Dog  a-ggga-cttgttgattttt-tt--tatgagaaataatttcaat--ga
                  MinkeWhale  a-ggag-tttattca--cct-gt--catgaaaaatgatttcagt--aa
                 KillerWhale  a-ggag-tttatgca--tct-gt--catgaaaaatgatttcagt--aa
                  SpermWhale  a-ggag-tttattca--tct-gt--catgaaaaatgatttcagt--aa
              ChacoanPeccary  a-ggag-tttgttca--ttt-tt--catgaaagataatttcaat--aa

Alignment block 48 of 179 in window, 6281175 - 6281176, 2 bps 
B D             ARS_UCD_addY  c-t
                      Rabbit  --c
              GreenSeaTurtle  c-t
                       Horse  c-t
             ChinesePangolin  c-t
                       Human  t-t
                    Aardvark  t-t
                   BlueWhale  t-t
     CommonBottlenoseDolphin  t-t
                 BelugaWhale  t-t
                         Pig  t-t
              FloridaManatee  t-t
                     Tuatara  c-t
                       Gayal  ctt
               AmericanBison  cct
                  LesserKudu  ctt
                 CommonEland  ctt
                     WildYak  ctt
                 DomesticYak  ctt
                 GreaterKudu  ctt
                    Bushbuck  ctt
                       Bongo  c-t
                      Impala  ctt
                        Suni  c-t
                Klipspringer  c-t
                WaterBuffalo  ctt
              AfricanBuffalo  c-t
                   Sitatunga  ctt
               MountainNyala  ctt
                 NilgiriTahr  c-t
B D                     ARS1  c-t
                    WildGoat  c-t
                SiberianIbex  c-t
              AlpineMuskDeer  ctt
       ChineseForestMuskDeer  ctt
            SiberianMuskDeer  ctt
                BlackMuntjac  c-t
                MountainGoat  c-t
                       Sheep  c-t
             EuropeanMouflon  c-t
              AsiaticMouflon  c-t
                   SnowSheep  c-t
                BighornSheep  c-t
                BarbarySheep  c-t
                      Bharal  c-t
               IndianMuntjac  c-t
               ReevesMuntjac  c-t
              PereDavidsDeer  c-t
             WhiteLippedDeer  c-t
                 YarkandDeer  c-t
                     RedDeer  c-t
                     HogDeer  c-t
             WhiteTailedDeer  c-t
                    MuleDeer  c-t
                    Reindeer  c-t
              EasternRoeDeer  c-t
              WesternRoeDeer  c-t
                 EurasianElk  c-t
            ChineseWaterDeer  c-t
                       Okapi  c-t
                     Giraffe  c-t
                   Pronghorn  c-t
               JavaMouseDeer  ctt
             LesserMouseDeer  ctt
                  ZebuCattle  c-t
                        Gaur  ctt
                    Steenbok  c--
          PrzewalskisGazelle  c--
               RoyalAntelope  c-t
                 KirksDikDik  t-t
                      Herola  c-t
              MaxwellsDuiker  c-t
               HarveysDuiker  c-t
                       Oribi  c-t
             ThomsonsGazelle  c--
               GrantsGazelle  c--
                     Gerenuk  c--
                       Saiga  c-t
                   Springbok  c-t
               BohorReedbuck  c-t
            DefassaWaterbuck  c-t
                      Lechwe  c-t
                     Gemsbok  c-t
          ScimitarHornedOryx  c-t
                RoanAntelope  c-t
               SableAntelope  c-t
              BlueWildebeest  c-t
                        Topi  c--
         GreaterHorseshoeBat  c--
     WesternEuropeanHedgehog  c--
                MonkParakeet  c--
                  RockPigeon  c--
                      Alpaca  c-t
           WildBactrianCamel  c-t
                ArabianCamel  c-t
                         Dog  c-t
                  MinkeWhale  c-c
                 KillerWhale  c-t
                  SpermWhale  c-t
              ChacoanPeccary  c-t

Alignment block 49 of 179 in window, 6281177 - 6281177, 1 bps 
B D             ARS_UCD_addY  t
                      Rabbit  t
              GreenSeaTurtle  a
                       Horse  t
             ChinesePangolin  t
                       Human  t
                    Aardvark  t
                   BlueWhale  t
     CommonBottlenoseDolphin  t
                 BelugaWhale  t
                         Pig  t
              FloridaManatee  t
                     Tuatara  a
                       Gayal  t
               AmericanBison  t
                  LesserKudu  t
                 CommonEland  t
                     WildYak  t
                 DomesticYak  t
                 GreaterKudu  t
                    Bushbuck  t
                       Bongo  t
                      Impala  t
                        Suni  t
                Klipspringer  t
                WaterBuffalo  t
              AfricanBuffalo  t
                   Sitatunga  t
               MountainNyala  t
                 NilgiriTahr  t
B D                     ARS1  t
                    WildGoat  t
                SiberianIbex  t
              AlpineMuskDeer  t
       ChineseForestMuskDeer  t
            SiberianMuskDeer  t
                BlackMuntjac  t
                MountainGoat  t
                       Sheep  t
             EuropeanMouflon  t
              AsiaticMouflon  t
                   SnowSheep  t
                BighornSheep  t
                BarbarySheep  t
                      Bharal  t
               IndianMuntjac  t
               ReevesMuntjac  t
              PereDavidsDeer  t
             WhiteLippedDeer  t
                 YarkandDeer  t
                     RedDeer  t
                     HogDeer  t
             WhiteTailedDeer  t
                    MuleDeer  t
                    Reindeer  t
              EasternRoeDeer  t
              WesternRoeDeer  t
                 EurasianElk  t
            ChineseWaterDeer  t
                       Okapi  t
                     Giraffe  t
                   Pronghorn  t
               JavaMouseDeer  t
             LesserMouseDeer  t
                  ZebuCattle  t
                        Gaur  t
                    Steenbok  t
          PrzewalskisGazelle  t
               RoyalAntelope  t
                 KirksDikDik  t
                      Herola  t
              MaxwellsDuiker  t
               HarveysDuiker  t
                       Oribi  t
             ThomsonsGazelle  t
               GrantsGazelle  t
                     Gerenuk  t
                       Saiga  t
                   Springbok  t
               BohorReedbuck  t
            DefassaWaterbuck  t
                      Lechwe  t
                     Gemsbok  t
          ScimitarHornedOryx  t
                RoanAntelope  t
               SableAntelope  t
              BlueWildebeest  t
                        Topi  t
         GreaterHorseshoeBat  t
     WesternEuropeanHedgehog  t
                MonkParakeet  t
                  HouseMouse  t
            ChineseTreeShrew  c
                  RockPigeon  g
                      Alpaca  t
           WildBactrianCamel  t
                ArabianCamel  t
                         Dog  t
                  MinkeWhale  t
                 KillerWhale  t
                  SpermWhale  t
              ChacoanPeccary  t

Alignment block 50 of 179 in window, 6281178 - 6281191, 14 bps 
B D             ARS_UCD_addY  tt----t-ttcttattca-t
                      Rabbit  ct----t-gtcttattcg-t
              GreenSeaTurtle  tt----c-tttccattca-t
                       Horse  tttct-t-ttcttattca-t
             ChinesePangolin  tttctgt-tttttactct-t
                       Human  ct----t-ttcttattca-t
                    Aardvark  tt----t-ttcttattca-t
                   BlueWhale  tt----t-ttcttattca-t
     CommonBottlenoseDolphin  tt----t-ttcttattca-t
                 BelugaWhale  tt----t-ttcttattca-t
                         Pig  ct----t-tttttactca-t
              FloridaManatee  tt----t-ttcttattca-t
                     Tuatara  ct----c-tttccattta-t
                       Gayal  tt----t-ttcttattca-t
               AmericanBison  tt----t-ttcttattca-t
                  LesserKudu  tt----t-ttcttactca-t
                 CommonEland  tt----t-ttcttattca-t
                     WildYak  tt----t-ttcttattca-t
                 DomesticYak  tt----t-ttcttattca-t
                 GreaterKudu  tt----t-ttcttattca-t
                    Bushbuck  tt----t-ttcttattca-t
                       Bongo  tt----t-ttcttattca-t
                      Impala  tt----t-ttcttatcca-t
                        Suni  tt----t-ttcttatcca-t
                Klipspringer  tt----t-ttcttattca-t
                WaterBuffalo  tt----t-ttcttattca-t
              AfricanBuffalo  tt----t-ttcttattca-t
                   Sitatunga  tt----t-ttcttattca-t
               MountainNyala  tt----t-ttcttattca-t
                 NilgiriTahr  tt----t-ctcttattca-t
B D                     ARS1  tt----t--tcttattca-t
                    WildGoat  tt----t-ttcttattca-t
                SiberianIbex  tt----t-ttcttattca-t
              AlpineMuskDeer  tt----t-ttcttattca-t
       ChineseForestMuskDeer  tt----t-ttcttattca-t
            SiberianMuskDeer  tt----t-ttcttattca-t
                BlackMuntjac  tt----t-ttcttattca-t
                MountainGoat  tt----t-tccttattca-t
                       Sheep  tt----t-ttcttattca-t
             EuropeanMouflon  tt----t-ttcttattca-t
              AsiaticMouflon  tt----t-ttcttattca-t
                   SnowSheep  tt----t-ttcttattca-t
                BighornSheep  tt----t-ttcttattca-t
                BarbarySheep  tt----t-ttcttattca-t
                      Bharal  tt----t-ttcttattca-t
               IndianMuntjac  tt----t-tccttattca-t
               ReevesMuntjac  tt----t-ttcttattca-t
              PereDavidsDeer  tt----t-ttcttattca-t
             WhiteLippedDeer  tt----t-ttcttattca-t
                 YarkandDeer  tt----t-ttcttattca-t
                     RedDeer  tt----t-ttctttttca-t
                     HogDeer  tt----t-ttcttattca-t
             WhiteTailedDeer  tt----t-ttcttattca-t
                    MuleDeer  tt----t-ttcttattca-t
                    Reindeer  tt----t-ttcttattca-t
              EasternRoeDeer  tt----t-ttcttattca-t
              WesternRoeDeer  tt----t-ttcttattca-t
                 EurasianElk  tt----t-ttcttattca-t
            ChineseWaterDeer  tt----t-ttcttattca-t
                       Okapi  tt----tcttcttattca-t
                     Giraffe  tt----ttttcttattca-t
                   Pronghorn  tt----t-cccttcttca-t
               JavaMouseDeer  tt----t-ttcttatttg-t
             LesserMouseDeer  tt----t-ttcttattcg-t
                  ZebuCattle  tt----t-ttcttattca-t
                        Gaur  tt----t-ttcttattca-t
                    Steenbok  tt----t-ttcttattca-t
          PrzewalskisGazelle  tt----t-ttcttattca-t
               RoyalAntelope  tt----t-ttcttattca-t
                 KirksDikDik  tt----t-ttcttattca-t
                      Herola  tt----t-ttcttattca-t
              MaxwellsDuiker  tt----t-ttcttattca-t
               HarveysDuiker  tt----t-ttcttattca-t
                       Oribi  tt----t-ttcttattca-t
             ThomsonsGazelle  tt----t-ttcttattca-t
               GrantsGazelle  tt----t-ttcttattca-t
                     Gerenuk  tt----t-ttcttattca-t
                       Saiga  tt----t-ttcttattaa-t
                   Springbok  tt----t-ttcttattca-t
               BohorReedbuck  tt----t-ttcttattca-t
            DefassaWaterbuck  tt----t-ttcttattca-t
                      Lechwe  tt----t-ttcttattca-t
                     Gemsbok  tt----t-ttcttattca-t
          ScimitarHornedOryx  tt----t-ttcttattca-t
                RoanAntelope  tt----t-ttcttattca-t
               SableAntelope  tt----t-ttcttattca-t
              BlueWildebeest  tt----t-ttcttattca-t
                        Topi  tt----t-ttcttattca-t
         GreaterHorseshoeBat  tt----t-tcttaa-tca-t
     WesternEuropeanHedgehog  tt----t-tcttaactca-t
B                    chicken  tt----c-tttccattca-t
                MonkParakeet  tt----c-tttccattca-t
                  HouseMouse  tt----c-ttcttattcc-t
            ChineseTreeShrew  aa----t-ttcttattca-t
                  RockPigeon  tt----c-tttccattca-t
          TropicalClawedFrog  tt----t-ttttttttcatt
                      Alpaca  ct----t-ttcttattca-t
           WildBactrianCamel  ct----t-ttcttattca-t
                ArabianCamel  ct----t-ttcttattca-t
                         Dog  ct----t-ttctttttcg-t
                  MinkeWhale  tt----t-ttcttattca-t
                 KillerWhale  tt----t-ttcttattca-t
                  SpermWhale  tt----t-ttcttattca-t
              ChacoanPeccary  ct----t-tttttattca-t

Alignment block 51 of 179 in window, 6281192 - 6281195, 4 bps 
B D             ARS_UCD_addY  t--tat
                      Rabbit  t--tat
                    Platypus  t--tgc
              GreenSeaTurtle  t--tat
                       Horse  t--tat
             ChinesePangolin  t--tat
                       Human  t--tat
                    Aardvark  t--tat
                   BlueWhale  t--tat
     CommonBottlenoseDolphin  t--tat
                 BelugaWhale  t--tat
                         Pig  t--ttt
              FloridaManatee  t--tat
                     Tuatara  t--tat
                       Gayal  t--tat
               AmericanBison  t--tat
                  LesserKudu  t--tat
                 CommonEland  t--tat
                     WildYak  t--tat
                 DomesticYak  t--tat
                 GreaterKudu  t--tat
                    Bushbuck  ttatat
                       Bongo  t--tat
                      Impala  t--tat
                        Suni  t--tat
                Klipspringer  t--tat
                WaterBuffalo  t--tat
              AfricanBuffalo  t--tat
                   Sitatunga  t--tat
               MountainNyala  t--tat
                 NilgiriTahr  t--tat
B D                     ARS1  t--tat
                    WildGoat  t--tat
                SiberianIbex  t--tat
              AlpineMuskDeer  t--tat
       ChineseForestMuskDeer  t--tat
            SiberianMuskDeer  t--tat
                BlackMuntjac  t--tgt
                MountainGoat  t--tat
                       Sheep  t--tat
             EuropeanMouflon  t--tat
              AsiaticMouflon  t--tat
                   SnowSheep  t--tat
                BighornSheep  t--tat
                BarbarySheep  t--tat
                      Bharal  t--tat
               IndianMuntjac  t--tgt
               ReevesMuntjac  t--tgt
              PereDavidsDeer  t--tat
             WhiteLippedDeer  t--tat
                 YarkandDeer  t--tat
                     RedDeer  t--tat
                     HogDeer  t--tat
             WhiteTailedDeer  t--tgt
                    MuleDeer  t--tgt
                    Reindeer  t--tgt
              EasternRoeDeer  t--tgt
              WesternRoeDeer  t--tgt
                 EurasianElk  t--tgt
            ChineseWaterDeer  t--tgt
                       Okapi  t--tat
                     Giraffe  t--tat
                   Pronghorn  t--tat
               JavaMouseDeer  t--tat
             LesserMouseDeer  t--tat
                  ZebuCattle  t--tat
                        Gaur  t--tat
                    Steenbok  t--tat
          PrzewalskisGazelle  t--tat
               RoyalAntelope  t--tat
                 KirksDikDik  t--tat
                      Herola  t--tat
              MaxwellsDuiker  t--tat
               HarveysDuiker  t--tat
                       Oribi  t--tat
             ThomsonsGazelle  t--tat
               GrantsGazelle  t--tat
                     Gerenuk  t--tat
                       Saiga  t--tat
                   Springbok  t--tat
               BohorReedbuck  t--tat
            DefassaWaterbuck  t--tat
                      Lechwe  t--tat
                     Gemsbok  t--tat
          ScimitarHornedOryx  t--tat
                RoanAntelope  t--tat
               SableAntelope  t--tat
              BlueWildebeest  t--tat
                        Topi  t--tat
         GreaterHorseshoeBat  t--tat
     WesternEuropeanHedgehog  t--tac
B                    chicken  t--tat
                MonkParakeet  t--tat
                  HouseMouse  t--tgt
            ChineseTreeShrew  t--tat
                  RockPigeon  t--tat
          TropicalClawedFrog  t--tac
                      Alpaca  t--tat
           WildBactrianCamel  t--tat
                ArabianCamel  t--tat
                         Dog  t--tat
                  MinkeWhale  t--tat
                 KillerWhale  t--tat
                  SpermWhale  t--tat
              ChacoanPeccary  t--ttt

Alignment block 52 of 179 in window, 6281196 - 6281196, 1 bps 
B D             ARS_UCD_addY  a
                      Rabbit  a
                    Platypus  a
              GreenSeaTurtle  a
                       Horse  a
             ChinesePangolin  a
                       Human  a
                    Aardvark  a
B                  zebrafish  a
                   BlueWhale  a
     CommonBottlenoseDolphin  a
                 BelugaWhale  a
                         Pig  a
              FloridaManatee  a
                     Tuatara  a
                       Gayal  a
               AmericanBison  a
                  LesserKudu  a
                 CommonEland  a
                     WildYak  a
                 DomesticYak  a
                 GreaterKudu  a
                    Bushbuck  a
                       Bongo  a
                      Impala  a
                        Suni  a
                Klipspringer  a
                WaterBuffalo  a
              AfricanBuffalo  a
                   Sitatunga  a
               MountainNyala  a
                 NilgiriTahr  a
B D                     ARS1  a
                    WildGoat  a
                SiberianIbex  a
              AlpineMuskDeer  a
       ChineseForestMuskDeer  a
            SiberianMuskDeer  a
                BlackMuntjac  a
                MountainGoat  a
                       Sheep  a
             EuropeanMouflon  a
              AsiaticMouflon  a
                   SnowSheep  a
                BighornSheep  a
                BarbarySheep  a
                      Bharal  a
               IndianMuntjac  a
               ReevesMuntjac  a
              PereDavidsDeer  a
             WhiteLippedDeer  a
                 YarkandDeer  a
                     RedDeer  a
                     HogDeer  a
             WhiteTailedDeer  a
                    MuleDeer  a
                    Reindeer  a
              EasternRoeDeer  a
              WesternRoeDeer  a
                 EurasianElk  a
            ChineseWaterDeer  a
                       Okapi  a
                     Giraffe  a
                   Pronghorn  a
               JavaMouseDeer  a
             LesserMouseDeer  a
                  ZebuCattle  a
                        Gaur  a
                    Steenbok  a
          PrzewalskisGazelle  a
               RoyalAntelope  a
                 KirksDikDik  a
                      Herola  a
              MaxwellsDuiker  a
               HarveysDuiker  a
                       Oribi  a
             ThomsonsGazelle  a
               GrantsGazelle  a
                     Gerenuk  a
                       Saiga  a
                   Springbok  a
               BohorReedbuck  a
            DefassaWaterbuck  a
                      Lechwe  a
                     Gemsbok  a
          ScimitarHornedOryx  a
                RoanAntelope  a
               SableAntelope  a
              BlueWildebeest  a
                        Topi  a
         GreaterHorseshoeBat  a
     WesternEuropeanHedgehog  a
B                    chicken  a
                MonkParakeet  a
                  HouseMouse  a
            ChineseTreeShrew  a
                  RockPigeon  a
          TropicalClawedFrog  a
                      Alpaca  a
           WildBactrianCamel  a
                ArabianCamel  a
                         Dog  a
                  MinkeWhale  a
                 KillerWhale  a
                  SpermWhale  a
              ChacoanPeccary  a

Alignment block 53 of 179 in window, 6281197 - 6281211, 15 bps 
B D             ARS_UCD_addY  gctgatcttctaacg
                      Rabbit  gctgattttctaatg
                    Platypus  gcggggctcctgtgg
              GreenSeaTurtle  gctgattttcttgtg
                       Horse  gctgatcttctaatg
             ChinesePangolin  gctgaccttctagtg
                       Human  gctgattttctaatg
                    Aardvark  gctgattttctaatg
B                  zebrafish  gctgaccccattgtt
                   BlueWhale  gctgatcttctaacg
     CommonBottlenoseDolphin  gctgatcttctaatg
                 BelugaWhale  gctgatcttctaatg
                         Pig  gctgatcttctaatg
              FloridaManatee  gctgattttctcatg
                     Tuatara  gctgattttcctgtg
                       Gayal  gctgatcttctaacg
               AmericanBison  gctgatcttctaacg
                  LesserKudu  gctgatcttctaacg
                 CommonEland  gctgatcttctaacg
                     WildYak  gctgatcttctaacg
                 DomesticYak  gctgatcttctaacg
                 GreaterKudu  gctgatcttctaacg
                    Bushbuck  gctgatcttctaacg
                       Bongo  gctgatcttctaacg
                      Impala  gctgatcttctagcg
                        Suni  gctgatcttctagcg
                Klipspringer  gctgattttctagcg
                WaterBuffalo  gctgatcttctaacg
              AfricanBuffalo  gctgatcttctaacg
                   Sitatunga  gctgatcttctaacg
               MountainNyala  gctgatcttctaacg
                 NilgiriTahr  gctgatcttctagca
B D                     ARS1  gctgatcttctagca
                    WildGoat  gctgatcttctagca
                SiberianIbex  gctgatcttctagca
              AlpineMuskDeer  gctgatcttctaatg
       ChineseForestMuskDeer  gctgatcttctaatg
            SiberianMuskDeer  gctgatcttctaatg
                BlackMuntjac  gctgatcttctaagg
                MountainGoat  gctgatcttctagca
                       Sheep  gctgatcttctagca
             EuropeanMouflon  gctgatcttctagca
              AsiaticMouflon  gctgatcttctagca
                   SnowSheep  gctgatcttctagca
                BighornSheep  gctgatcttctagca
                BarbarySheep  gctgatcttctagca
                      Bharal  gctgatcttctagca
               IndianMuntjac  gctgatcttctaagg
               ReevesMuntjac  gctgatcttctaagg
              PereDavidsDeer  gctgatcttctaacg
             WhiteLippedDeer  gctgatcttctaacg
                 YarkandDeer  gctgatcttctaacg
                     RedDeer  gctgatcttctaacg
                     HogDeer  gctgatcttctaacg
             WhiteTailedDeer  gctgatcttctaacg
                    MuleDeer  gctgatcttctaacg
                    Reindeer  gctgatcttctaacg
              EasternRoeDeer  gctgatcttctaacg
              WesternRoeDeer  gctgatcttctaacg
                 EurasianElk  gctgatcttctaacg
            ChineseWaterDeer  gctgatcttctaacg
                       Okapi  gctgatcttctaacg
                     Giraffe  gctgatcttctaacg
                   Pronghorn  gctgatcttctaact
               JavaMouseDeer  gctgatcttctaatg
             LesserMouseDeer  gctgatcttctaatg
                  ZebuCattle  gctgatcttctaacg
                        Gaur  gctgatcttctaacg
                    Steenbok  gctgatcttctagca
          PrzewalskisGazelle  gctgatcttctagcg
               RoyalAntelope  gctgatcttctagcg
                 KirksDikDik  gctgatcttctagca
                      Herola  gctga---tctagcg
              MaxwellsDuiker  gctgattttctagca
               HarveysDuiker  gctgattttctagca
                       Oribi  gctgatcttctagca
             ThomsonsGazelle  gctgatcttctagca
               GrantsGazelle  gctgatcttctagca
                     Gerenuk  gctgatcttctagca
                       Saiga  gctga---tctagca
                   Springbok  gctgatcttctagca
                CommonDuiker  gcttattttctagca
               BohorReedbuck  gctgatcttctagcg
            DefassaWaterbuck  gctgatcttctagcg
                      Lechwe  gctgatcttctagcg
                     Gemsbok  gctgatcttctagca
          ScimitarHornedOryx  gctgatcttctagcg
                RoanAntelope  gctgatcttctagcg
               SableAntelope  gctgatcttctagcg
              BlueWildebeest  gctga---tctagcg
                        Topi  gctga---tctagcg
         GreaterHorseshoeBat  gctgatcttctaatg
     WesternEuropeanHedgehog  gccgatcttctcatg
B                    chicken  gctgattttcttgta
                MonkParakeet  gctgattttcttgtc
                  HouseMouse  gctgactttctaatg
            ChineseTreeShrew  gctgattctctaatg
                  RockPigeon  gctgattttcttgta
          TropicalClawedFrog  gttggaatttccatt
                      Alpaca  gctgatcttctaatg
           WildBactrianCamel  gctgatcttctaatg
                ArabianCamel  gctgatcttctaatg
                         Dog  gctgatcttctcatg
                  MinkeWhale  gctgatcttctaacg
                 KillerWhale  gctgatcttctaatg
                  SpermWhale  gctgatcttctaatg
              ChacoanPeccary  gctgatcttctaatg

Alignment block 54 of 179 in window, 6281212 - 6281250, 39 bps 
B D             ARS_UCD_addY  caagtggaaggaaaacccaaatgttgtttctttaaattt
                      Rabbit  caagtggaaggaaaacccaaatgttgcttctttaaattt
                    Platypus  caggcggaagggaggcccaagtgctgcttcttcaggttg
              GreenSeaTurtle  caaatggaggggaaaccaaaatgttgcttctttaagttt
                       Horse  caagtggaaggaaaacccaaatgttgcttctttaaattt
             ChinesePangolin  caagtggaaggaaaacccaaatgttgcttctttaaattt
                       Human  caagtggatggaaaacccaaatgttgcttctttaaattt
                    Aardvark  caagtggaaggaaaacccaagtgttgcttctttaaattt
B                  zebrafish  caagtagatcggaaaccgaagtgttgctttttctccttc
                   BlueWhale  caagtggaaggaaaacccaaatgttgcttctttaaattt
     CommonBottlenoseDolphin  caagtggaaggaaaacccaaatgttgcttctttaaattt
                 BelugaWhale  caagtggaaggaaaacccaaatgttgcttctttaaattt
                         Pig  caagtggaaggaaaacccaaatgctgcttctttaaattt
              FloridaManatee  caagtggaaggaaaacccaagtgttgcttctttaaattt
                     Tuatara  ccaatggaaggaaaaccaaaatgttgcttctttaagttt
                       Gayal  caagtggaaggaaaacccaaatgttgcttctttaaattt
               AmericanBison  caagtggaaggaaaacccaaatgttgcttctttaaattt
                  LesserKudu  caagtggaaggaaaacccaaatgttgcttctttaaattt
                 CommonEland  caagtggaaggaaaacccaaatgttgcttctttaaattt
                     WildYak  caagtggaaggaaaacccaaatgttgcttctttaaattt
                 DomesticYak  caagtggaaggaaaacccaaatgttgcttctttaaattt
                 GreaterKudu  caagtggaaggaaaacccaaatgttgcttctttaaattt
                    Bushbuck  caagtggaaggaaaacccaaatgttgcttctttaaattt
                       Bongo  caagtggaaggaaaacccaaatgttgcttctttaaattt
                      Impala  gaagtggaagaaaaacccaaatgttgcttctttaaattt
                        Suni  gaagtggaagaaaaacccaaatgttgcttctttaaattt
                Klipspringer  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                WaterBuffalo  caagtggaaggaaaacccaaatgttgcttctttcaattt
              AfricanBuffalo  caagtggaaggaaaacccaaatgttgcttctttcaattt
                   Sitatunga  caagtggaaggaaaacccaagtgttgcttctttaaattt
               MountainNyala  caagtggaaggaaaacccaagtgttgcttctttaaattt
                 NilgiriTahr  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
B D                     ARS1  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                    WildGoat  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                SiberianIbex  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
              AlpineMuskDeer  caagtggaaggaaaacccaaatgttgcttctttcaattt
       ChineseForestMuskDeer  caagtggaaggaaaacccaaatgttgcttctttcaattt
            SiberianMuskDeer  caagtggaaggaaaacccaaatgttgcttctttcaattt
                BlackMuntjac  caagtggaaggaaaacccaaatgttgcttctttcaattt
                MountainGoat  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                       Sheep  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
             EuropeanMouflon  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
              AsiaticMouflon  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                   SnowSheep  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                BighornSheep  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                BarbarySheep  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                      Bharal  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
               IndianMuntjac  caagtggaaggaaaacccaaatgttgcttctttcaattt
               ReevesMuntjac  caagtggaaggaaaacccaaatgttgcttctttcaattt
              PereDavidsDeer  caagtggaaggaaaacccaaatgttgcttctttcaattt
             WhiteLippedDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
                 YarkandDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
                     RedDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
                     HogDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
             WhiteTailedDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
                    MuleDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
                    Reindeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
              EasternRoeDeer  caagtggaaggaaaacccaaatgttgcttctttcagttc
              WesternRoeDeer  caagtggaaggaaaacccaaatgttgcttctttcagttc
                 EurasianElk  caagtggaaggaaaacccaaatgttgcttctttcagttt
            ChineseWaterDeer  caagtggaaggaaaacccaaatgttgcttctttcagttt
                       Okapi  caagtggaaggaaaacccaaatgttgcttctttcaattt
                     Giraffe  caagtggaaggaaaacccaaatgttgcttcttccaattt
                   Pronghorn  caagtggaaggaaaacccaaatgttgcttctttcaattt
               JavaMouseDeer  caagtggaaggaaaacccaaatgttgcttctttaagttt
             LesserMouseDeer  caagtggaaggaaaacccaaatgttgcttctttaagttt
                  ZebuCattle  caagtggaaggaaaacccaaatgttgcttctttaaattt
                        Gaur  caagtggaaggaaaacccaaatgttgcttctttaaattt
                    Steenbok  gaagtgcaagaaacacccaaatgttgcttctttaaattt
          PrzewalskisGazelle  gaggtgcaagaaaaacccaaatgttgcttctttaaattt
               RoyalAntelope  gaagtacaagaaaaacccaaatgttgcttctttaaattt
                 KirksDikDik  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                      Herola  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
              MaxwellsDuiker  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
               HarveysDuiker  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                       Oribi  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
             ThomsonsGazelle  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
               GrantsGazelle  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                     Gerenuk  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                       Saiga  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                   Springbok  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                CommonDuiker  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
               BohorReedbuck  gaagtggaagaaaaacccaaatgttgcttctttcaattt
            DefassaWaterbuck  gaagtggaagaaaaacccaaatgttgcttctttcaattt
                      Lechwe  gaagtggaagaaaaacccaaatgttgcttctttcaattt
                     Gemsbok  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
          ScimitarHornedOryx  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                RoanAntelope  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
               SableAntelope  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
              BlueWildebeest  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
                        Topi  gaagtgcaagaaaaacccaaatgttgcttctttaaattt
         GreaterHorseshoeBat  caagtggaaggaaaacccaaatgttgcttctttaaattt
     WesternEuropeanHedgehog  caagcagaaggaaagcataaatgctgtttctttaaattc
B                    chicken  caaatggagggaaaaccaaaatgttgcttctttaagttt
                MonkParakeet  caaatggagggaaaaccaaaatgttgcttctttaagttt
                  HouseMouse  caagcggatggcaagcccaaatgttgcttttttaaattt
            ChineseTreeShrew  caagtggaaggaaaacccaaatgttgcttctttaaattt
                  RockPigeon  caaatggagggaaaaccaaaatgttgcttctttaagttt
          TropicalClawedFrog  gatatgaaagaaaaacctatttgttgcttttttaaattc
                      Alpaca  caagtggaaggaaaacccaaatgttgcttctttaagttt
           WildBactrianCamel  caagtagaaggaaaacccaaatgttgcttctttaagttt
                ArabianCamel  caagtagaaggaaaacccaaatgttgcttctttaagttt
                         Dog  caagtggaaggaaaacccaaatgttgtttctttaagttt
                  Coelacanth  catgtggaaggcaaaccggtgtgttgtttctttaagttc
                  MinkeWhale  caagtggaaggaaaacccaaatgttgcttctttaaattt
                 KillerWhale  caagtggaaggaaaacccaaatgttgcttctttaaattt
                  SpermWhale  caagtggaaggaaaacccaaatgttgcttctttaaattt
              ChacoanPeccary  caagtggaaggaaaacccaaatgttgcttctttaaattt

Alignment block 55 of 179 in window, 6281251 - 6281462, 212 bps 
B D             ARS_UCD_addY  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
                      Rabbit  agctctaaaatacaatacaataaagtagtaaaggcacaactatggatatatctgagacccgtga---aga
                    Platypus  agcccccggatccagcccaacaaggtgctcaaggcccggctctgggtccacctgcggcccgtcc---tca
              GreenSeaTurtle  agctctaaaatacaatataacaaagtagtaaaggcccagttgtggatttacttgaggcaagtcc---aga
                       Horse  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacccgtca---aga
             ChinesePangolin  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                       Human  agctctaaaatacaatacaataaagtagtaaaggcccaactatggatatatttgagacccgtcg---aga
                    Aardvark  agctctaaaatacaatataataaagtagtcaaggcccaactgtggatatatctgagacctgtga---aga
B                  zebrafish  agtccgaagatccaagcgaaccggatcgtaagagcgcagctctgggttcatctgagaccggcgg---agg
                   BlueWhale  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgaggccagtca---aga
     CommonBottlenoseDolphin  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgaggccagtca---aga
                 BelugaWhale  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgaggccagtca---aga
                         Pig  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacccgtca---aga
              FloridaManatee  agctctaaaatacaatacaataaggtagtaaaggcccaactgtggatatatctgagacccgtca---aga
                     Tuatara  agctctaaaatacagtacaataaagtagtgaaggcccaattgtggatacacttaagacaagttc---aga
                       Gayal  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
               AmericanBison  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
                  LesserKudu  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                 CommonEland  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                     WildYak  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
                 DomesticYak  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
                 GreaterKudu  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                    Bushbuck  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                       Bongo  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                      Impala  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                        Suni  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagatctgtca---aga
                Klipspringer  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                WaterBuffalo  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
              AfricanBuffalo  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                   Sitatunga  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
               MountainNyala  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgagacctgtca---aga
                 NilgiriTahr  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
B D                     ARS1  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                    WildGoat  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                SiberianIbex  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              AlpineMuskDeer  agctctaagatacaatacaataaagtagtgaaggcccaactgtggatatatctgagacctgtcc---aga
       ChineseForestMuskDeer  agctctaagatacaatacaataaagtagtgaaggcccaactgtggatatatctgagacctgtcc---aga
            SiberianMuskDeer  agctctaagatacaatacaataaagtagtgaaggcccaactgtggatatatctgagacctgtcc---aga
                BlackMuntjac  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                MountainGoat  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                       Sheep  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
             EuropeanMouflon  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              AsiaticMouflon  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                   SnowSheep  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                BighornSheep  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                BarbarySheep  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                      Bharal  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
               IndianMuntjac  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
               ReevesMuntjac  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              PereDavidsDeer  agctctaagatacaatacaataaagtcgtaaaggcccaactgtggatatatctgagacctgtca---aga
             WhiteLippedDeer  agctctaagatacaatacaataaagtcgtaaaggcccaactgtggatatatctgagacctgtca---aga
                 YarkandDeer  agctctaagatacaatacaataaagtcgtaaaggcccaactgtggatatatctgagacctgtca---aga
                     RedDeer  agctctaagatacaatacaataaagtcgtaaaggcccaactgtggatatatctgagacctgtca---aga
                     HogDeer  agctctaagatacaatacaataaagtcgtaaaggcccaactgtggatatatctgagacctgtca---aga
             WhiteTailedDeer  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                    MuleDeer  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                    Reindeer  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              EasternRoeDeer  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              WesternRoeDeer  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                 EurasianElk  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
            ChineseWaterDeer  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                     Giraffe  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                   Pronghorn  agctctaagatacaatacaataaagtagtaaaggcccagctgtggatatatctgagacctgtca---aga
               JavaMouseDeer  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatttgagacccgtga---aga
             LesserMouseDeer  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatttgagacccgtga---aga
                  ZebuCattle  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
                        Gaur  agctctaagatacaatacaataaactagtaaaggcccaactgtggatatatctgaggcctgtca---aga
                    Steenbok  aactctaagatacaacacaataaagtagtaaaggcccaattgtggatctatctgagacctgtca---aga
          PrzewalskisGazelle  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
               RoyalAntelope  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagatctgtca---aga
                 KirksDikDik  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
                      Herola  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              MaxwellsDuiker  agctctaagatacaacacaataaagtggtaaaggcccaactgtggatatatctgagacctgtca---aga
               HarveysDuiker  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                       Oribi  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
             ThomsonsGazelle  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
               GrantsGazelle  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
                     Gerenuk  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
                       Saiga  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
                   Springbok  aactctaagatacaacacaataaagtagtaaaggcccaactgtggatctatctgagacctgtca---aga
                CommonDuiker  agctctaagatacaacacaataaagtaataaaggcccaactgtggatatatctgagacctgtca---aga
               BohorReedbuck  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
            DefassaWaterbuck  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                      Lechwe  agctctaagatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                     Gemsbok  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
          ScimitarHornedOryx  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                RoanAntelope  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
               SableAntelope  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
              BlueWildebeest  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
                        Topi  agctctaagatacaacacaataaagtagtaaaggcccaactgtggatatatctgagacctgtca---aga
         GreaterHorseshoeBat  agctctaaaatacaatacaataaagtagtgaaggcccaactgtggatatatctgagacccgtca---aga
     WesternEuropeanHedgehog  agctctaaaatacaatacaataaagtagtcaaggcccagctgtggatctacctgagccctgtca---aga
B                    chicken  agctctaaaatacaatataacaaagtagtaaaggcacaattatggatatacttgaggcaagtcc---aaa
                MonkParakeet  agctctaaaatacaatataacaaagtagtaaaggcacaattgtggatatacttgaggcaagtcc---aaa
                  HouseMouse  agctctaaaatacagtacaacaaagtagtaaaagcccaactgtggatatatctcagacccgtca---aga
            ChineseTreeShrew  agctctaaaatacagtacaataaagtagtaaaggcccaactgtggatatatctgagacccgtca---aga
                  RockPigeon  agctctaaaatccaatataacaaagtagtaaaggcacaattgtggatatacttgaggcaagtcc---aaa
          TropicalClawedFrog  agttctaaagttcagttgacaaaaatatcgaaagcacagctctggatacatttaaaacctgttc---aaa
                      Alpaca  agctctaaaatacaatataataaagtagtaaaggcccaattgtggatctatctgagacccgtcc---aga
           WildBactrianCamel  agctctaaaatacaatacaataaagtagtaaaggcccaattgtggatctatctgagacccgtcc---aga
                ArabianCamel  agctctaaaatacaatacaataaagtagtaaaggcccaattgtggatctatctgagacccgtac---aga
                         Dog  agctctaaaatacaatataataaagtagtaaaggcccaactgtggatatatctgagacccgtca---aga
                  Coelacanth  agcccccaagtacagtacagcagggtggtaaaagctcagctctggatacatcttaaacccatcgatcaga
                  MinkeWhale  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgaggccagtca---aga
                 KillerWhale  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgaggccagtca---aga
                  SpermWhale  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgaggccagtca---aga
              ChacoanPeccary  agctctaaaatacaatacaataaagtagtaaaggcccaactgtggatatatctgagacccgtca---aga

                ARS_UCD_addY  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                      Rabbit  ctcctacaacagtgtttgtgcaaatcctgaggctcatcaaacctatgaaagacggtacaaggtatactgg
                    Platypus  agcccaccaccgtcttcgtgcagatcctcaggctcgtccagcccggaaaacacagctccaggcaccccgg
              GreenSeaTurtle  aacctacaacagtattcgtgcagatcctgagactcatcagacccatgaaagacggtacaagatatactgg
                       Horse  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
             ChinesePangolin  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtacactgg
                       Human  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacctatgaaagacggtacaaggtatactgg
                    Aardvark  ctcctacaacggtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                   zebrafish  aggcgaccaccgtcttcttacagatatctcggctgat---gcccgttaaggacggaggaagacacc---g
                   BlueWhale  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
     CommonBottlenoseDolphin  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 BelugaWhale  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                         Pig  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              FloridaManatee  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                     Tuatara  aacctacaacagtaattgtgcatatcttgagactcatcaaacccatgaaagatgg---------tactgg
                       Gayal  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               AmericanBison  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                  LesserKudu  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 CommonEland  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                     WildYak  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 DomesticYak  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 GreaterKudu  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                    Bushbuck  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                       Bongo  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                      Impala  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                        Suni  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                Klipspringer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                WaterBuffalo  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              AfricanBuffalo  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                   Sitatunga  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               MountainNyala  ctcctacgaccgtgtttgcgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 NilgiriTahr  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                        ARS1  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                    WildGoat  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                SiberianIbex  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              AlpineMuskDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
       ChineseForestMuskDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
            SiberianMuskDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                BlackMuntjac  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                MountainGoat  ctcctacaacagtgtttgtgcaaatcctgagacttataaaacccatgaaagacggtacaaggtatactgg
                       Sheep  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
             EuropeanMouflon  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              AsiaticMouflon  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                   SnowSheep  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                BighornSheep  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                BarbarySheep  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                      Bharal  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               IndianMuntjac  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               ReevesMuntjac  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              PereDavidsDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
             WhiteLippedDeer  ctcctacgacggtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 YarkandDeer  ctcctacgacggtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                     RedDeer  ctcctacgacggtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                     HogDeer  ctcctacgacggtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
             WhiteTailedDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                    MuleDeer  ctcctacsacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                    Reindeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              EasternRoeDeer  ctcctacgacagtgtttgtgcaaatcctgaggctcatcaaacccatgaaagacggtacaaggtatactgg
              WesternRoeDeer  ctcctacgacagtgtttgtgcaaatcctgaggctcatcaaacccatgaaagacggtacaaggtatactgg
                 EurasianElk  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
            ChineseWaterDeer  ctcctacgacagtgtttgtgcaaatcctgaggctcatcaaacccatgaaagacggtacaaggtatactgg
                     Giraffe  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                   Pronghorn  ctcctacgacagtgtttgtacaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               JavaMouseDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
             LesserMouseDeer  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                  ZebuCattle  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                        Gaur  ctcctgcgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                    Steenbok  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatggaagacggtacaaggtatactgg
          PrzewalskisGazelle  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               RoyalAntelope  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 KirksDikDik  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                      Herola  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              MaxwellsDuiker  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               HarveysDuiker  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                       Oribi  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
             ThomsonsGazelle  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               GrantsGazelle  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                     Gerenuk  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                       Saiga  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                   Springbok  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                CommonDuiker  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               BohorReedbuck  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
            DefassaWaterbuck  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                      Lechwe  ctcctacgacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                     Gemsbok  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
          ScimitarHornedOryx  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                RoanAntelope  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
               SableAntelope  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              BlueWildebeest  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                        Topi  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
         GreaterHorseshoeBat  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
     WesternEuropeanHedgehog  gccctacaacagtgtttgtgcaaatcctgagactcatcaagcccatgaaagacggtacaaggtatactgg
                     chicken  aacctacaacggtgtttgtgcagatcctgagactcattaagcccatgaaagacggtacaagatatactgg
                MonkParakeet  aacctacaacagtgtttgtgcagatcctgagacttattaaacccatgaaagacggtacaagatatactgg
                  HouseMouse  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
            ChineseTreeShrew  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                  RockPigeon  aacctacaacggtgtttgtgcagatcctgagacttattaaacccatgaaagacggcacaagatatacggg
          TropicalClawedFrog  aacctacgacagttgttgtgcagatctcgagactcattaagcctttgaaagatggtacaagatacactgg
                      Alpaca  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
           WildBactrianCamel  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                ArabianCamel  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                         Dog  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaagatatactgg
                  Coelacanth  agcaaacaacagtaactctagaggcggtgaggctcctt---catttgaaagatggaatcaaacggatgaa
                  MinkeWhale  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                 KillerWhale  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
                  SpermWhale  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg
              ChacoanPeccary  ctcctacaacagtgtttgtgcaaatcctgagactcatcaaacccatgaaagacggtacaaggtatactgg

                ARS_UCD_addY  aatccgatctctgaaacttgacatgaa-------------------------------------------
                      Rabbit  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    Platypus  gatccgctccctgaaactccacgtgcagcccacccgcacggcaggggccggggccgggaccgggaccggg
              GreenSeaTurtle  aattcgatctttgaaacttgacatgaa-------------------------------------------
                       Horse  aatccgatctctgaaacttgacatgaa-------------------------------------------
             ChinesePangolin  aatacgatctctgaaacttgacatgaa-------------------------------------------
                       Human  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    Aardvark  aatccgatctctgaaacttgacatgaa-------------------------------------------
                   zebrafish  aatacgatccctgaaaatcgacgtgaa-------------------------------------------
                   BlueWhale  aatccgatctctgaaacttgacatgaa-------------------------------------------
     CommonBottlenoseDolphin  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 BelugaWhale  aatccgatctctgaaacttgacatgaa-------------------------------------------
                         Pig  aatccgatctctgaaacttgacatgaa-------------------------------------------
              FloridaManatee  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     Tuatara  aattcgatctttgaaacttgacatgaa-------------------------------------------
                       Gayal  aatccgatctctgaaacttgacatgaa-------------------------------------------
               AmericanBison  aatccgatctctgaaacttgacatgaa-------------------------------------------
                  LesserKudu  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 CommonEland  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     WildYak  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 DomesticYak  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 GreaterKudu  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    Bushbuck  aatccgatctctgaaacttgacatgaa-------------------------------------------
                       Bongo  aatccgatctctgaaacttgacatgaa-------------------------------------------
                      Impala  aatccgatctctgaaacttgacatgaa-------------------------------------------
                        Suni  aatccgatctctgaaacttgacatgaa-------------------------------------------
                Klipspringer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                WaterBuffalo  aatccgatctctgaaacttgacatgaa-------------------------------------------
              AfricanBuffalo  aatccgatctctgaaacttgacatgaa-------------------------------------------
                   Sitatunga  aatccgatctctgaaacttgacatgaa-------------------------------------------
               MountainNyala  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 NilgiriTahr  aatccgatctctgaaacttgacatgaa-------------------------------------------
                        ARS1  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    WildGoat  aatccgatctctgaaacttgacatgaa-------------------------------------------
                SiberianIbex  aatccgatctctgaaacttgacatgaa-------------------------------------------
              AlpineMuskDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
       ChineseForestMuskDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
            SiberianMuskDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                BlackMuntjac  aatccgatctctgaaacttgacatgaa-------------------------------------------
                MountainGoat  aatccgatctctgaaacttgacatgaa-------------------------------------------
                       Sheep  aatccgatctctgaaacttgacatgaa-------------------------------------------
             EuropeanMouflon  aatccgatctctgaaacttgacatgaa-------------------------------------------
              AsiaticMouflon  aatccgatctctgaaacttgacatgaa-------------------------------------------
                   SnowSheep  aatccgatctctgaaacttgacatgaa-------------------------------------------
                BighornSheep  aatccgatctctgaaacttgacatgaa-------------------------------------------
                BarbarySheep  aatccgatctctgaaacttgacatgag-------------------------------------------
                      Bharal  aatccgatctctgaaacttgacatgaa-------------------------------------------
               IndianMuntjac  aatccgatctctgaaacttgacatgaa-------------------------------------------
               ReevesMuntjac  aatccgatctctgaaacttgacatgaa-------------------------------------------
              PereDavidsDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
             WhiteLippedDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 YarkandDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     RedDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     HogDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
             WhiteTailedDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    MuleDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    Reindeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
              EasternRoeDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
              WesternRoeDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 EurasianElk  aatccgatctctgaaacttgacatgaa-------------------------------------------
            ChineseWaterDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     Giraffe  aatccgatctctgaaacttgacatgaa-------------------------------------------
                   Pronghorn  aatccgatctctgaagcttgacatgaa-------------------------------------------
               JavaMouseDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
             LesserMouseDeer  aatccgatctctgaaacttgacatgaa-------------------------------------------
                  ZebuCattle  aatccgatctctgaaacttgacatgaa-------------------------------------------
                        Gaur  aatccgatctctgaaacttgacatgaa-------------------------------------------
                    Steenbok  aatccgatctctgaaacttgacatgaa-------------------------------------------
          PrzewalskisGazelle  aatccgatctctgaaacttgacatgaa-------------------------------------------
               RoyalAntelope  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 KirksDikDik  aatccgatctctgaaacttgacatgaa-------------------------------------------
                      Herola  aatccgatctctgaaacttgacatgaa-------------------------------------------
              MaxwellsDuiker  aatccgatctctgaaacttgacatgaa-------------------------------------------
               HarveysDuiker  aatccgatctctgaaacttgacatgaa-------------------------------------------
                       Oribi  aatccgatctctgaaacttgacatgaa-------------------------------------------
             ThomsonsGazelle  aatccgatctctgaaacttgacatgaa-------------------------------------------
               GrantsGazelle  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     Gerenuk  aatccgatctctgaaacttgacatgaa-------------------------------------------
                       Saiga  aatccgatctctgaaacttgacatgaa-------------------------------------------
                   Springbok  aatccgatctctgaaacttgacatgaa-------------------------------------------
                CommonDuiker  aatccgatctctgaaacttgacatgaa-------------------------------------------
               BohorReedbuck  aatccgatctctgaaacttgacatgaa-------------------------------------------
            DefassaWaterbuck  aatccgatctctgaaacttgacatgaa-------------------------------------------
                      Lechwe  aatccgatctctgaaacttgacatgaa-------------------------------------------
                     Gemsbok  aatccgatctctgaaacttgacatgaa-------------------------------------------
          ScimitarHornedOryx  aatccgatctctgaaacttgacatgaa-------------------------------------------
                RoanAntelope  aatccgatctctgaaacttgacatgaa-------------------------------------------
               SableAntelope  aatccgatctctgaaacttgacatgaa-------------------------------------------
              BlueWildebeest  aatccgatctctgaaacttgacatgaa-------------------------------------------
                        Topi  aatccgatctctgaaacttgacatgaa-------------------------------------------
         GreaterHorseshoeBat  aatccgatctctgaaacttgacatgaa-------------------------------------------
     WesternEuropeanHedgehog  gatccggtctctgaaacttgacatgag-------------------------------------------
                     chicken  aattcgatctttgaaacttgacatgaa-------------------------------------------
                MonkParakeet  aattcgatctttgaaacttgacatgaa-------------------------------------------
                  HouseMouse  aatccgatctctgaaacttgacatgag-------------------------------------------
            ChineseTreeShrew  aatccgatctctgaaacttgacatgaa-------------------------------------------
                  RockPigeon  aattcgatctttgaaacttgacatgaa-------------------------------------------
          TropicalClawedFrog  aatccgctcactaaaacttgaaatgaa-------------------------------------------
                      Alpaca  aatccgatctctgaaacttgacatgaa-------------------------------------------
           WildBactrianCamel  aatccgatctctgaaacttgacatgaa-------------------------------------------
                ArabianCamel  aatccgatctctgaaacttgacatgaa-------------------------------------------
                         Dog  aatccgatctctgaaacttgacatgaa-------------------------------------------
                  Coelacanth  aagtcggactttgaaagttgaaatgaa-------------------------------------------
                  MinkeWhale  aatccgatctctgaaacttgacatgaa-------------------------------------------
                 KillerWhale  aatccgatctctgaaacttgacatgaa-------------------------------------------
                  SpermWhale  aatccgatctctgaaacttgacatgaa-------------------------------------------
              ChacoanPeccary  aatccgatctctgaaacttgacatgaa-------------------------------------------

                ARS_UCD_addY  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                      Rabbit  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                    Platypus  ggcgggggcggggccgggcccgggcccgggggcatctggcacagcatcgacgtgaagacggtgctgca
              GreenSeaTurtle  ------------------cccaggcac--tggtatttggcagagtattgatgtgaagacagtgttaca
                       Horse  ------------------cccaggcgc--tggtatttggcagagcattgatgtgaagacagtgttgca
             ChinesePangolin  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                       Human  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                    Aardvark  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                   zebrafish  ------------------cgcaggagt--cacgtcttggcagagtatagacgtaaagcaggtgctcac
                   BlueWhale  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
     CommonBottlenoseDolphin  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                 BelugaWhale  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                         Pig  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
              FloridaManatee  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                     Tuatara  ------------------cccaggcac--tggtatttggaagagttttgatgtgaagacggtgttgca
                       Gayal  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
               AmericanBison  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                  LesserKudu  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                 CommonEland  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                     WildYak  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                 DomesticYak  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                 GreaterKudu  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca
                    Bushbuck  ------------------cccaggcac--tggtatttggcagagcattgatgtgaagacagtgttgca