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SNPs (single nucleotide polymorphisms)

Please enter a variant rsid, or a gene symbol, or a chromosome location for one of the genome versions, such as GRCg6a (GCF_000002315.6) and GRCg7b (GCF_016699485.2), to obtain a SNP information and allele frequency distribution pattern in 52 geographically distributed chicken populations.

Basic search

Variant rsid:   e.g., , ,

OrGene symbol:   e.g., , , ,

Or Chromosome location:   For GRCg6a, e.g., ,

Or Chromosome location:   For GRCg7b, e.g., ,

Advanced search

Minor allele frequency    (range: 0-1)

Consequence type:

Transcript variant
  • Coding variant
    • Missense_variant
    • Initiator_codon_variant
    • Start_lost
    • Stop_lost
    • Stop_gained
    • Stop_retained_variant
    • Synonymous_variant
  • Non-coding variant
    • 5_prime_UTR_variant
    • 5_prime_UTR_premature_start_codon_gain_variant
    • 3_prime_UTR_variant
    • Intron_variant
    • Non_coding_transcript_exon_variant
  • Splice variant
    • Splice_acceptor_variant
    • Splice_donor_variant
    • Splice_region_variant
Intergenic variant
  • Upstream_gene_variant
  • Downstream_gene_variant
  • Intergenic_variant